Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for mrrf

Gene Name Gene ID Reads Annotation
mrrf ENSDARG00000034174, ENSDARG00000115754 791 mitochondrial ribosome recycling factor [Source:ZFIN;Acc:ZDB-GENE-040704-12]










Genes with expression patterns similar to mrrf

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. mrrf ENSDARG00000034174, ENSDARG00000115754 791 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 mitochondrial ribosome recycling factor [Source:ZFIN;Acc:ZDB-GENE-040704-12]
2. ppm1la ENSDARG00000063218 2142 2.33 - 0.825 - - - - 0.735 0.770 - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
3. SENP1 SENP1 1122 1.879 - - - - 0.978 - - 0.901 -
4. cuedc2 ENSDARG00000039365 484 1.875 - - - - 0.987 - - 0.888 - CUE domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6283]
5. zic5 ENSDARG00000016022 1034 1.87 - - - - 0.970 - - 0.900 - zic family member 5 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040622-1]
6. lrrc40 ENSDARG00000017708 1156 1.833 - - - - 0.915 - - 0.918 - leucine rich repeat containing 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6062]
7. axin2 ENSDARG00000100149 4223 1.791 - - - - 0.922 - - 0.869 - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
8. rpl7l1 ENSDARG00000042864 3256 1.781 - - - - 0.871 - - 0.910 - ribosomal protein L7-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-970]
9. ZNF337_7 ZNF337_7 198 1.776 - 0.823 - - - - - 0.953 -
10. C19H9orf91 C19H9orf91 249 1.769 - - - - - - 0.827 0.942 -
11. lrpprc ENSDARG00000043970 3847 1.759 - - - - 0.882 - - 0.877 - leucine-rich pentatricopeptide repeat containing [Source:ZFIN;Acc:ZDB-GENE-030131-7887]
12. lsm14ab ENSDARG00000100553 3837 1.741 - - - - 0.946 - - 0.795 - LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
13. ephb4a ENSDARG00000100725 1749 1.74 - - - - 0.962 - - 0.778 - eph receptor B4a [Source:ZFIN;Acc:ZDB-GENE-990415-62]
14. cand2 ENSDARG00000005749, ENSDARG00000109268, ENSDARG00000112192 356 1.713 - 0.848 - - - - 0.865 - - cullin-associated and neddylation-dissociated 2 (putative) [Source:ZFIN;Acc:ZDB-GENE-060503-645]
15. asap1a ENSDARG00000029463 1566 1.71 - 0.763 - - - - - 0.947 - ArfGAP with SH3 domain, ankyrin repeat and PH domain 1a [Source:ZFIN;Acc:ZDB-GENE-070912-129]
16. mrps15 ENSDARG00000109289 3258 1.708 - - - - 0.966 - - 0.742 - mitochondrial ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-040718-188]
17. gclc ENSDARG00000013095 2146 1.69 - - - - 0.971 - - 0.719 - glutamate-cysteine ligase, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-030131-5056]
18. lingo4b ENSDARG00000078527 235 1.687 - - - - - - 0.731 0.956 - leucine rich repeat and Ig domain containing 4b [Source:ZFIN;Acc:ZDB-GENE-091214-3]
19. tomm22 ENSDARG00000045146, ENSDARG00000109761 3545 1.684 - - - - 0.951 - 0.733 - - translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-9810]
20. zgc:163143 ENSDARG00000076437 166 1.683 - 0.796 - - - - - 0.887 - zgc:163143 [Source:ZFIN;Acc:ZDB-GENE-070410-143]
21. zgc:55461 ENSDARG00000116706, ENSDARG00000117112 2835 1.683 - 0.715 - - 0.968 - - - - zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879]
22. atp5g3a 9539 1.679 - - - - 0.940 - 0.739 - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9), genome duplicate a
23. nup50 ENSDARG00000017454 4425 1.671 - - - - 0.946 - - 0.725 - nucleoporin 50 [Source:ZFIN;Acc:ZDB-GENE-030131-1689]
24. ndufa8 ENSDARG00000058041, ENSDARG00000111900 5493 1.669 - - - - 0.884 - 0.785 - - NADH:ubiquinone oxidoreductase subunit A8 [Source:ZFIN;Acc:ZDB-GENE-040426-1688]
25. pnp4a ENSDARG00000057575 355 1.655 - 0.755 - - - - - 0.900 - purine nucleoside phosphorylase 4a [Source:ZFIN;Acc:ZDB-GENE-040625-83]
26. pip5k2 pip5k2 5743 1.653 - - - - 0.915 - - 0.738 -
27. pelo ENSDARG00000055477 1927 1.643 - - - - - - 0.711 0.932 - pelota mRNA surveillance and ribosome rescue factor [Source:ZFIN;Acc:ZDB-GENE-040426-1074]
28. CABZ01074309.1 CABZ01074309.1 121 1.64 - 0.804 - - - - 0.836 - -
29. timm17a ENSDARG00000029510, ENSDARG00000115486 4295 1.638 - - - - 0.930 - 0.708 - - translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:ZFIN;Acc:ZDB-GENE-031030-6]
30. kdm1a ENSDARG00000060679 6152 1.636 - - - - 0.831 - - 0.805 - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
31. CABZ01081490.1 ENSDARG00000111653 11892 1.61 - - - - 0.908 0.702 - - -
32. e2f4 ENSDARG00000101578, ENSDARG00000109320 1783 1.605 - 0.737 - - - - - 0.868 - E2F transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2773]
33. NRAP ENSDARG00000009341 3565 1.602 - 0.798 - - - - 0.804 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
34. mars ENSDARG00000034396 3618 1.599 - - - - 0.855 0.744 - - - methionyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030219-83]
35. BSCL2 ENSDARG00000037008 689 1.597 - 0.836 - - - - 0.761 - - Berardinelli-Seip congenital lipodystrophy 2 (seipin) [Source:ZFIN;Acc:ZDB-GENE-051113-140]
36. nat9 ENSDARG00000071425, ENSDARG00000111763 1462 1.586 - 0.718 - - - - - 0.868 - N-acetyltransferase 9 (GCN5-related, putative) [Source:ZFIN;Acc:ZDB-GENE-030131-5097]
37. itm2ba ENSDARG00000007098 5686 1.579 - - - - 0.867 - - 0.712 - integral membrane protein 2Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2352]
38. rai14 ENSDARG00000039974, ENSDARG00000111103 916 1.577 - 0.844 - - - - 0.733 - - retinoic acid induced 14 [Source:ZFIN;Acc:ZDB-GENE-040718-235]
39. meis2b ENSDARG00000077840 5166 1.577 - 0.755 - - 0.822 - - - - Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
40. kctd12.1 ENSDARG00000069843, ENSDARG00000113802 141 1.571 - 0.828 - - - - 0.743 - - potassium channel tetramerisation domain containing 12.1 [Source:ZFIN;Acc:ZDB-GENE-030902-5]
41. ndufa5 ENSDARG00000039346 2617 1.564 - 0.732 - - - - - 0.832 - NADH:ubiquinone oxidoreductase subunit A5 [Source:ZFIN;Acc:ZDB-GENE-050320-17]
42. nmrk2 ENSDARG00000067848 10293 1.559 - 0.777 - - - - 0.782 - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
43. sh3bgr ENSDARG00000021633 3498 1.555 - 0.746 - - - - 0.809 - - SH3 domain binding glutamate-rich protein [Source:ZFIN;Acc:ZDB-GENE-040801-27]
44. BX294434.1 ENSDARG00000061272 6493 1.555 - 0.801 - - - - 0.754 - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
45. abrab ENSDARG00000033854 380 1.553 - 0.751 - - - - 0.802 - - actin binding Rho activating protein b [Source:ZFIN;Acc:ZDB-GENE-040822-7]
46. stac3 ENSDARG00000098883 1765 1.547 - 0.756 - - - - 0.791 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
47. chrna1 ENSDARG00000009021 2931 1.542 - 0.792 - - - - 0.750 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
48. mrpl54 ENSDARG00000071468 2715 1.538 - - - - - - 0.745 0.793 - mitochondrial ribosomal protein L54 [Source:ZFIN;Acc:ZDB-GENE-050208-381]
49. ddx49 ENSDARG00000012899 1604 1.532 - 0.774 - - - - 0.758 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]
50. tlk1a ENSDARG00000042467 2339 1.526 - - - - - - 0.755 0.771 - tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
51. tnnc1b ENSDARG00000037539 13945 1.526 - 0.711 - - - - 0.815 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
52. ispd ENSDARG00000005034 173 1.524 - 0.742 - - - - 0.782 - - isoprenoid synthase domain containing [Source:ZFIN;Acc:ZDB-GENE-061110-16]
53. ect2 ENSDARG00000007278 1193 1.522 - 0.729 - - - - - 0.793 - epithelial cell transforming 2 [Source:ZFIN;Acc:ZDB-GENE-040831-2]
54. rp42-pen rp42-pen 3395 1.516 - 0.795 - - - - 0.721 - -
55. igsf11 ENSDARG00000109783 520 1.516 0.713 0.803 - - - - - - - immunoglobulin superfamily member 11 [Source:ZFIN;Acc:ZDB-GENE-080303-21]
56. eif2s1b ENSDARG00000052178 11961 1.513 - - - - 0.792 - 0.721 - - eukaryotic translation initiation factor 2, subunit 1 alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-283]
57. cbsa ENSDARG00000053500, ENSDARG00000112676 792 1.512 - 0.716 - - - - 0.796 - - cystathionine-beta-synthase a [Source:ZFIN;Acc:ZDB-GENE-050417-367]
58. gypc ENSDARG00000041546 1487 1.511 - 0.718 - - - - 0.793 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
59. gmpr ENSDARG00000016160 1537 1.51 - 0.765 - - - - 0.745 - - guanosine monophosphate reductase [Source:ZFIN;Acc:ZDB-GENE-050522-48]
60. hif1an ENSDARG00000031915 2098 1.51 - - - - - - 0.705 0.805 - hypoxia inducible factor 1 subunit alpha inhibitor [Source:ZFIN;Acc:ZDB-GENE-030826-19]
61. CU638714.1 ENSDARG00000100303 2132 1.509 - 0.756 - - - - 0.753 - -
62. zgc:158296 ENSDARG00000070923 3935 1.508 - 0.736 - - - - 0.772 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
63. txlnbb ENSDARG00000076241 6396 1.506 - 0.750 - - - - 0.756 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
64. zgc:66479 ENSDARG00000008732 3347 1.504 - 0.703 - - - - 0.801 - - zgc:66479 [Source:ZFIN;Acc:ZDB-GENE-031030-10]
65. PTPLA PTPLA 4044 1.496 - 0.773 - - - - 0.723 - -
66. hoxb4a ENSDARG00000013533 3857 1.495 - 0.717 - - - - 0.778 - - homeobox B4a [Source:ZFIN;Acc:ZDB-GENE-990415-105]
67. prx ENSDARG00000017246 6183 1.495 - 0.760 - - - - 0.735 - - periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
68. hhatla ENSDARG00000039051 6598 1.494 - 0.723 - - - - 0.771 - - hedgehog acyltransferase like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1865]
69. sptb ENSDARG00000030490 7128 1.491 - 0.727 - - - - 0.764 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
70. ntmt1 ENSDARG00000022399 5779 1.483 - 0.765 - - - - 0.718 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
71. tnw 16679 1.483 - 0.769 - - - - 0.714 - - tenascin W, transcript variant X2
72. ndufab1b ENSDARG00000014915 12796 1.482 - - - - 0.734 - 0.748 - - NADH:ubiquinone oxidoreductase subunit AB1b [Source:ZFIN;Acc:ZDB-GENE-030131-4437]
73. pygma ENSDARG00000055518 15972 1.481 - 0.760 - - - - 0.721 - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
74. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.48 0.727 0.753 - - - - - - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
75. srl ENSDARG00000104587 11126 1.476 - 0.709 - - - - 0.767 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
76. sfrp2 ENSDARG00000070050, ENSDARG00000114620 1681 1.475 - 0.770 - - - - 0.705 - - secreted frizzled-related protein 2 [Source:ZFIN;Acc:ZDB-GENE-061013-293]
77. DNAJA4 ENSDARG00000051762 5657 1.474 - 0.731 - - - - 0.743 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
78. MRPL53 ENSDARG00000008920 147 1.467 - 0.700 - - - - 0.767 - - mitochondrial ribosomal protein L53 [Source:ZFIN;Acc:ZDB-GENE-040912-93]
79. obsl1b ENSDARG00000077388 2511 1.462 - 0.724 - - - - 0.738 - - obscurin-like 1b [Source:ZFIN;Acc:ZDB-GENE-050809-29]
80. trdn ENSDARG00000041779 4283 1.456 - 0.733 - - - - 0.723 - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
81. mybphb ENSDARG00000003081 5208 1.454 - 0.740 - - - - 0.714 - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
82. cacng1 cacng1 3118 1.452 - 0.728 - - - - 0.724 - -
83. dnajc11 1939 1.445 - 0.730 - - - - - 0.715 - DnaJ heat shock protein family (Hsp40) member C11
84. C13H10orf71 3489 1.427 - 0.708 - - - - 0.719 - - chromosome 13 C10orf71 homolog
85. TUSC5_1 TUSC5_1 320 0.992 - - - - 0.992 - - - -
86. spag7 ENSDARG00000011555 3224 0.991 - - - - 0.991 - - - - sperm associated antigen 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1632]
87. nefma ENSDARG00000021351 790 0.991 - - - - 0.991 - - - - neurofilament, medium polypeptide a [Source:ZFIN;Acc:ZDB-GENE-050522-205]
88. lrch2 ENSDARG00000075580, ENSDARG00000116418 255 0.99 - - - - 0.990 - - - - leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-080114-1]
89. fam193b ENSDARG00000102831 442 0.99 - - - - 0.990 - - - - family with sequence similarity 193, member B [Source:ZFIN;Acc:ZDB-GENE-111102-1]
90. pfkpb ENSDARG00000012801 223 0.99 - - - - 0.990 - - - - phosphofructokinase, platelet b [Source:ZFIN;Acc:ZDB-GENE-070912-634]
91. dopey1 438 0.99 - - - - 0.990 - - - - dopey family member 1, transcript variant X4
92. lig4 ENSDARG00000060620 369 0.99 - - - - 0.990 - - - - ligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]
93. gorab ENSDARG00000042031 483 0.99 - - - - 0.990 - - - - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
94. myl2b ENSDARG00000053424 226 0.99 - - - - 0.990 - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
95. atxn7l3 ENSDARG00000029331 531 0.989 - - - - 0.989 - - - - ataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
96. ercc6 ENSDARG00000075612 1175 0.989 - - - - 0.989 - - - - excision repair cross-complementation group 6 [Source:ZFIN;Acc:ZDB-GENE-070228-1]
97. ago4 ENSDARG00000100854 496 0.989 - - - - 0.989 - - - - argonaute RISC catalytic component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5357]
98. ccr10 ENSDARG00000040643 255 0.989 - - - - 0.989 - - - - chemokine (C-C motif) receptor 10 [Source:ZFIN;Acc:ZDB-GENE-040718-424]
99. brd9 ENSDARG00000017143 936 0.989 - - - - 0.989 - - - - bromodomain containing 9 [Source:ZFIN;Acc:ZDB-GENE-060502-1]
100. ccdc28b ENSDARG00000011222 528 0.989 - - - - 0.989 - - - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]

There are 1492 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA