Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for mmp9

Gene Name Gene ID Reads Annotation
mmp9 ENSDARG00000042816 298 matrix metallopeptidase 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2132]










Genes with expression patterns similar to mmp9

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. mmp9 ENSDARG00000042816 298 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 matrix metallopeptidase 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2132]
2. cyp26c1 ENSDARG00000056029 1426 2.397 - 0.709 - - - - 0.885 - 0.803 cytochrome P450, family 26, subfamily C, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-050714-2]
3. tmem205 ENSDARG00000100677 101 2.317 - 0.711 - - - 0.868 0.738 - - transmembrane protein 205 [Source:ZFIN;Acc:ZDB-GENE-070112-1692]
4. msxa msxa 263 1.896 - - - - - 0.910 - - 0.986
5. si:ch211-135f11.1 166 1.869 - - - - - - 0.882 - 0.987 si:ch211-135f11.1, transcript variant X3
6. ssh2b ENSDARG00000098955 614 1.838 - - - - - - 0.861 - 0.977 slingshot protein phosphatase 2b [Source:ZFIN;Acc:ZDB-GENE-081205-4]
7. gna12a ENSDARG00000025826 1769 1.832 - - - - - 0.878 - - 0.954 guanine nucleotide binding protein (G protein) alpha 12a [Source:ZFIN;Acc:ZDB-GENE-050221-1]
8. fgf8a ENSDARG00000003399 580 1.82 - - - - - - 0.836 - 0.984 fibroblast growth factor 8a [Source:ZFIN;Acc:ZDB-GENE-990415-72]
9. sar1b ENSDARG00000103403 1699 1.807 - - - - - - 0.835 - 0.972 secretion associated, Ras related GTPase 1B [Source:ZFIN;Acc:ZDB-GENE-040426-1958]
10. si:ch211-219f7.3 si:ch211-219f7.3 48 1.801 - - - - - 0.898 0.903 - -
11. zgc:136439 ENSDARG00000009267 720 1.8 - - - - - - 0.818 - 0.982 zgc:136439 [Source:ZFIN;Acc:ZDB-GENE-060421-2858]
12. MON1B_1 MON1B_1 697 1.789 - - - - - - 0.810 - 0.979
13. pex7 ENSDARG00000042553 409 1.775 - - - - - - 0.785 - 0.990 peroxisomal biogenesis factor 7 [Source:ZFIN;Acc:ZDB-GENE-050320-105]
14. ccdc90b ENSDARG00000044626, ENSDARG00000110887 501 1.77 - - - - - - 0.788 - 0.982 coiled-coil domain containing 90B [Source:ZFIN;Acc:ZDB-GENE-040724-162]
15. vcana ENSDARG00000103515 611 1.77 - - - - - - 0.802 - 0.968 versican a [Source:ZFIN;Acc:ZDB-GENE-011023-1]
16. lamtor5 ENSDARG00000090194, ENSDARG00000115255 2539 1.742 - - - - - - 0.812 - 0.930 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:ZFIN;Acc:ZDB-GENE-110411-193]
17. ube3b ENSDARG00000061960 978 1.735 - 0.781 - - - - - - 0.954 ubiquitin protein ligase E3B [Source:ZFIN;Acc:ZDB-GENE-060526-231]
18. kcnk1a ENSDARG00000045067 743 1.734 - - - - - 0.930 0.804 - - potassium channel, subfamily K, member 1a [Source:ZFIN;Acc:ZDB-GENE-070620-26]
19. mpv17 ENSDARG00000032431 1225 1.724 - - - - - 0.747 - - 0.977 MpV17 mitochondrial inner membrane protein [Source:ZFIN;Acc:ZDB-GENE-040426-1168]
20. PVRL4 1691 1.723 - - - - - 0.762 - - 0.961 poliovirus receptor-related 4
21. megf6a ENSDARG00000079199 103 1.711 - - - - - 0.828 0.883 - - multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
22. HIP1R HIP1R 490 1.709 - - - - - - 0.728 - 0.981
23. CARD11 ENSDARG00000052741 249 1.709 - - - - - - 0.732 - 0.977 caspase recruitment domain family, member 11 [Source:ZFIN;Acc:ZDB-GENE-100219-1]
24. arhgap5 ENSDARG00000061294 2228 1.708 - - - - - - 0.773 - 0.935 Rho GTPase activating protein 5 [Source:ZFIN;Acc:ZDB-GENE-081014-1]
25. zgc:174651 zgc:174651 90 1.704 - - - - - 0.891 0.813 - -
26. usp11 ENSDARG00000076303 183 1.7 - - - - - 0.813 0.887 - - ubiquitin specific peptidase 11 [Source:ZFIN;Acc:ZDB-GENE-081104-421]
27. cd2ap ENSDARG00000015224 2830 1.689 - - - - - 0.759 - - 0.930 CD2-associated protein [Source:ZFIN;Acc:ZDB-GENE-030131-8078]
28. pparaa ENSDARG00000031777 216 1.686 - - - - - 0.764 0.922 - - peroxisome proliferator-activated receptor alpha a [Source:ZFIN;Acc:ZDB-GENE-041210-169]
29. trim25l ENSDARG00000020863 292 1.682 - - - - - 0.827 0.855 - - tripartite motif containing 25, like [Source:ZFIN;Acc:ZDB-GENE-040914-87]
30. TSC22D1 ENSDARG00000038306 517 1.681 - - - - - - - 0.707 0.974 TSC22 domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7785]
31. si:dkey-161j23.7 ENSDARG00000092882 180 1.676 - 0.816 - - - - 0.860 - - si:dkey-161j23.7 [Source:ZFIN;Acc:ZDB-GENE-091204-391]
32. atg4b ENSDARG00000052104 758 1.675 - - - - - - 0.703 - 0.972 autophagy related 4B, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-040917-3]
33. fastkd1 ENSDARG00000056128 141 1.668 - - - - - 0.781 0.887 - - FAST kinase domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1833]
34. daam1a ENSDARG00000015059 1460 1.667 - - - - - 0.718 - - 0.949 dishevelled associated activator of morphogenesis 1a [Source:ZFIN;Acc:ZDB-GENE-030911-6]
35. zbtb2b ENSDARG00000028086, ENSDARG00000110834 1609 1.667 - 0.849 - - - - - - 0.818 zinc finger and BTB domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2753]
36. tbc1d22a ENSDARG00000045510 363 1.666 0.767 - - - - - 0.899 - - TBC1 domain family, member 22a [Source:ZFIN;Acc:ZDB-GENE-041114-144]
37. cxcr4a ENSDARG00000057633 1829 1.662 - - - - - 0.790 - - 0.872 chemokine (C-X-C motif) receptor 4a [Source:ZFIN;Acc:ZDB-GENE-020102-1]
38. lims1 ENSDARG00000026985 2072 1.658 - - - - - 0.841 - - 0.817 LIM and senescent cell antigen-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-050522-236]
39. gkap1 ENSDARG00000068123 2645 1.649 - 0.773 - - - - - - 0.876 G kinase anchoring protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2485]
40. si:dkey-56e3.2 ENSDARG00000092551 835 1.644 - - - - - - 0.867 - 0.777 si:dkey-56e3.2 [Source:ZFIN;Acc:ZDB-GENE-090313-316]
41. si:ch211-284o19.8 ENSDARG00000053836 43 1.64 - - - - - 0.754 0.886 - - si:ch211-284o19.8 [Source:ZFIN;Acc:ZDB-GENE-070912-289]
42. hsdl1 ENSDARG00000041736 171 1.629 - - - - - 0.831 0.798 - - hydroxysteroid dehydrogenase like 1 [Source:ZFIN;Acc:ZDB-GENE-041212-31]
43. tlr7 ENSDARG00000068812, ENSDARG00000075685 30 1.627 - - - - - 0.724 0.903 - - toll-like receptor 7 [Source:ZFIN;Acc:ZDB-GENE-040219-11]
44. spsb3a ENSDARG00000077737 527 1.627 - - - - - - 0.897 0.730 - splA/ryanodine receptor domain and SOCS box containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-4182]
45. SLC44A2 ENSDARG00000037059 88 1.624 - 0.753 - - - - 0.871 - - solute carrier family 44 (choline transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3065]
46. tefb ENSDARG00000098103 370 1.619 - 0.740 - - - - 0.879 - - thyrotrophic embryonic factor b [Source:ZFIN;Acc:ZDB-GENE-050522-224]
47. zgc:113452 ENSDARG00000074146 759 1.605 - - - - - 0.815 0.790 - - zgc:113452 [Source:ZFIN;Acc:ZDB-GENE-050913-16]
48. zgc:112083 ENSDARG00000037405 306 1.604 - 0.794 - - - - 0.810 - - zgc:112083 [Source:ZFIN;Acc:ZDB-GENE-050417-284]
49. tmem258 ENSDARG00000078785 9578 1.603 - - - - - - 0.771 - 0.832 transmembrane protein 258 [Source:ZFIN;Acc:ZDB-GENE-040426-1739]
50. arl6ip5b ENSDARG00000016238 1622 1.6 - - - - - 0.702 - - 0.898 ADP-ribosylation factor-like 6 interacting protein 5b [Source:ZFIN;Acc:ZDB-GENE-040718-223]
51. esrp2 ENSDARG00000018814, ENSDARG00000115061 1198 1.598 - - - - - - 0.779 - 0.819 epithelial splicing regulatory protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9824]
52. rad18 ENSDARG00000027938 574 1.594 - - - - - 0.856 0.738 - - RAD18 E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-745]
53. pdcd6ip ENSDARG00000025269 2522 1.593 - - - - - - 0.734 - 0.859 programmed cell death 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2678]
54. spint1b ENSDARG00000012467 97 1.591 - - - - - 0.708 0.883 - - serine peptidase inhibitor, Kunitz type 1 b [Source:ZFIN;Acc:ZDB-GENE-071218-1]
55. pacs1a ENSDARG00000044556, ENSDARG00000117043 914 1.588 - 0.807 - - - - 0.781 - - phosphofurin acidic cluster sorting protein 1a [Source:ZFIN;Acc:ZDB-GENE-050208-244]
56. CU928070.1 CU928070.1 1152 1.586 - - - - - 0.751 0.835 - -
57. NEDD4 NEDD4 2040 1.58 - 0.792 - - - - 0.788 - -
58. GANAB_2 GANAB_2 3210 1.579 0.703 - - - - - 0.876 - -
59. VPS72 11 1.578 - - - 0.710 - 0.868 - - - vacuolar protein sorting 72 homolog (S. cerevisiae)
60. fam134c fam134c 1550 1.569 - 0.764 - - - - 0.805 - -
61. aatka ENSDARG00000078222 218 1.563 - 0.707 - - - - 0.856 - - apoptosis-associated tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-100812-4]
62. rin1a ENSDARG00000079095 99 1.561 - 0.747 - - - 0.814 - - - Ras and Rab interactor 1a [Source:ZFIN;Acc:ZDB-GENE-091204-129]
63. ripk4 ENSDARG00000043211 775 1.561 - 0.719 - - - - - - 0.842 receptor-interacting serine-threonine kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2042]
64. mlec ENSDARG00000059630 2057 1.556 - - - - - 0.821 0.735 - - malectin [Source:ZFIN;Acc:ZDB-GENE-081105-187]
65. psmf1 ENSDARG00000022652 527 1.554 - 0.820 - - - 0.734 - - - proteasome inhibitor subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040718-282]
66. arhgap27 ENSDARG00000104255 439 1.549 - 0.703 - - - - 0.846 - - Rho GTPase activating protein 27 [Source:ZFIN;Acc:ZDB-GENE-030131-3922]
67. olfml3b ENSDARG00000062171 264 1.524 - - - - - 0.753 0.771 - - olfactomedin-like 3b [Source:ZFIN;Acc:ZDB-GENE-050302-161]
68. FAM3D ENSDARG00000091625 1392 1.52 - - - - - 0.817 0.703 - - family with sequence similarity 3 member D [Source:HGNC Symbol;Acc:HGNC:18665]
69. alkbh6 ENSDARG00000077253 117 1.514 - 0.723 - - - - 0.791 - - alkB homolog 6 [Source:ZFIN;Acc:ZDB-GENE-060407-1]
70. MED8 ENSDARG00000114425 459 1.505 - 0.771 - - - 0.734 - - - mediator complex subunit 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2091]
71. wsb1 ENSDARG00000021343 3828 1.5 - 0.727 - - - - - - 0.773 WD repeat and SOCS box containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1946]
72. tgm5l ENSDARG00000098837 174 1.499 - - - - - 0.750 0.749 - - transglutaminase 5, like [Source:ZFIN;Acc:ZDB-GENE-110411-176]
73. ppp1r14aa ENSDARG00000011239 980 1.498 0.765 - - - - - 0.733 - - protein phosphatase 1, regulatory (inhibitor) subunit 14Aa [Source:ZFIN;Acc:ZDB-GENE-050417-413]
74. skia ENSDARG00000042151 1850 1.498 - - - - - 0.728 0.770 - - v-ski avian sarcoma viral oncogene homolog a [Source:ZFIN;Acc:ZDB-GENE-990715-9]
75. il6r ENSDARG00000104474 150 1.487 - - - - - 0.787 - 0.700 - interleukin 6 receptor [Source:ZFIN;Acc:ZDB-GENE-080107-7]
76. kctd15a ENSDARG00000045893 1272 1.483 - - - - - 0.714 0.769 - - potassium channel tetramerization domain containing 15a [Source:ZFIN;Acc:ZDB-GENE-041010-105]
77. IER2 IER2 604 1.469 - - - - - 0.750 0.719 - -
78. pgpep1 ENSDARG00000054666 489 1.444 0.730 - - - - 0.714 - - - pyroglutamyl-peptidase I [Source:ZFIN;Acc:ZDB-GENE-050522-88]
79. ralgps2 ENSDARG00000026519 1610 1.423 - 0.708 - - - - 0.715 - - Ral GEF with PH domain and SH3 binding motif 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1212]
80. slc12a9 ENSDARG00000060366 293 0.991 - - - - - - - - 0.991 solute carrier family 12, member 9 [Source:ZFIN;Acc:ZDB-GENE-050208-222]
81. slc6a19b ENSDARG00000056719 140 0.989 - - - - - - - - 0.989 solute carrier family 6 (neutral amino acid transporter), member 19b [Source:ZFIN;Acc:ZDB-GENE-030131-4755]
82. def6b ENSDARG00000044524 99 0.987 - - - - - - - - 0.987 differentially expressed in FDCP 6b homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-110408-59]
83. pfkfb2a ENSDARG00000023840 184 0.987 - - - - - - - - 0.987 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2a [Source:ZFIN;Acc:ZDB-GENE-040426-966]
84. sox8 sox8 109 0.987 - - - - - - - - 0.987
85. mylkb ENSDARG00000004753 95 0.987 - - - - - - - - 0.987 myosin light chain kinase b [Source:ZFIN;Acc:ZDB-GENE-041111-150]
86. zgc:154006 ENSDARG00000061797 152 0.987 - - - - - - - - 0.987 zgc:154006 [Source:ZFIN;Acc:ZDB-GENE-061013-134]
87. PCDH20 ENSDARG00000036424, ENSDARG00000101910 90 0.987 - - - - - - - - 0.987 protocadherin 20 [Source:NCBI gene;Acc:100007362]
88. slc25a23a ENSDARG00000005690 824 0.987 - - - - - - - - 0.987 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
89. SLC35A2 ENSDARG00000058990 289 0.986 - - - - - - - - 0.986 solute carrier family 35 (UDP-galactose transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-030616-62]
90. nudt3b ENSDARG00000042123 311 0.986 - - - - - - - - 0.986 nudix (nucleoside diphosphate linked moiety X)-type motif 3b [Source:ZFIN;Acc:ZDB-GENE-041010-128]
91. zgc:113333 ENSDARG00000038242 797 0.986 - - - - - - - - 0.986 zgc:113333 [Source:ZFIN;Acc:ZDB-GENE-050320-57]
92. prkra ENSDARG00000076718 606 0.986 - - - - - - - - 0.986 protein kinase, interferon-inducible double stranded RNA dependent activator [Source:ZFIN;Acc:ZDB-GENE-050309-206]
93. HTR1E 103 0.986 - - - - - - - - 0.986 5-hydroxytryptamine receptor 1E
94. panx1a ENSDARG00000025285 352 0.985 - - - - - - - - 0.985 pannexin 1a [Source:ZFIN;Acc:ZDB-GENE-040426-766]
95. THEM4 ENSDARG00000061621 364 0.985 - - - - - - - - 0.985 thioesterase superfamily member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-982]
96. smim8 ENSDARG00000071040 622 0.985 - - - - - - - - 0.985 small integral membrane protein 8 [Source:ZFIN;Acc:ZDB-GENE-050522-423]
97. coil ENSDARG00000040070 863 0.984 - - - - - - - - 0.984 coilin p80 [Source:ZFIN;Acc:ZDB-GENE-000330-8]
98. LARS2 ENSDARG00000075337 181 0.984 - - - - - - - - 0.984 leucyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-070928-3]
99. ppp6r2b ENSDARG00000069654 323 0.984 - - - - - - - - 0.984 protein phosphatase 6, regulatory subunit 2b [Source:ZFIN;Acc:ZDB-GENE-070705-441]
100. tacc1 ENSDARG00000073753 1127 0.984 - - - - - - - - 0.984 transforming, acidic coiled-coil containing protein 1 [Source:ZFIN;Acc:ZDB-GENE-090521-5]

There are 1526 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA