Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for mir219-3

Gene Name Gene ID Reads Annotation
mir219-3 46 microRNA 219-3










Genes with expression patterns similar to mir219-3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. mir219-3 46 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 microRNA 219-3
2. GADD45G GADD45G 382 1.86 0.905 - - - - 0.955 - - -
3. TRIM46 TRIM46 73 1.826 - - - - 0.877 0.949 - - -
4. DLGAP2 DLGAP2 36 1.789 0.889 - - - - 0.900 - - -
5. cbln2b ENSDARG00000077151 38 1.771 0.948 - - - - 0.823 - - - cerebellin 2b precursor [Source:ZFIN;Acc:ZDB-GENE-070615-12]
6. zfpm2a ENSDARG00000040123 46 1.753 - - - - - 0.838 0.915 - - zinc finger protein, FOG family member 2a [Source:ZFIN;Acc:ZDB-GENE-060130-4]
7. TUSC5_1 TUSC5_1 320 1.742 0.762 - - - - - 0.980 - -
8. BX465203.2 BX465203.2 23 1.739 - - - - 0.824 - 0.915 - -
9. ntng2a ENSDARG00000077367 43 1.727 0.889 - - - - 0.838 - - - netrin g2a [Source:ZFIN;Acc:ZDB-GENE-081105-186]
10. cdk5r2a ENSDARG00000071011 167 1.713 0.933 - - - - 0.780 - - - cyclin-dependent kinase 5, regulatory subunit 2a (p39) [Source:ZFIN;Acc:ZDB-GENE-050417-22]
11. penka ENSDARG00000004869 161 1.701 0.938 - - - - 0.763 - - - proenkephalin a [Source:ZFIN;Acc:ZDB-GENE-030729-31]
12. cib2 ENSDARG00000102820 296 1.689 0.795 - - - - 0.894 - - - calcium and integrin binding family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1663]
13. ncam1a ENSDARG00000056181 193 1.679 0.834 - - - - 0.845 - - - neural cell adhesion molecule 1a [Source:ZFIN;Acc:ZDB-GENE-990415-31]
14. si:dkey-152b24.7 ENSDARG00000099715 26 1.666 - - - - - - 0.889 - 0.777 si:dkey-152b24.7 [Source:ZFIN;Acc:ZDB-GENE-100921-77]
15. cdk5r1b ENSDARG00000045087 2075 1.663 0.911 - - - - 0.752 - - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
16. elavl4 ENSDARG00000045639 998 1.656 0.940 - - - - 0.716 - - - ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
17. lbx1b ENSDARG00000018611 399 1.639 0.804 - - - - - 0.835 - - ladybird homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050309-27]
18. AL928852.1 AL928852.1 23 1.629 0.714 - - - - - 0.915 - -
19. SYT2 ENSDARG00000014169 265 1.628 0.774 - - - - 0.854 - - - synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
20. PPP1R3E PPP1R3E 340 1.621 0.771 - - - - 0.850 - - -
21. UBE2QL1 ENSDARG00000079276 3474 1.617 0.774 - - - - 0.843 - - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
22. INA INA 950 1.617 0.875 - - - - 0.742 - - -
23. ptprz1b ENSDARG00000020871 435 1.611 - - - - - 0.718 0.893 - - protein tyrosine phosphatase, receptor-type, Z polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-050506-100]
24. BSCL2 ENSDARG00000037008 689 1.611 0.860 - - - - - 0.751 - - Berardinelli-Seip congenital lipodystrophy 2 (seipin) [Source:ZFIN;Acc:ZDB-GENE-051113-140]
25. ANKRD13D ENSDARG00000098140 88 1.607 0.777 - - - - 0.830 - - - ankyrin repeat domain 13 family, member D [Source:ZFIN;Acc:ZDB-GENE-101007-3]
26. tmem35 ENSDARG00000052567 5685 1.604 0.767 - - - - 0.837 - - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
27. slc30a2 ENSDARG00000021305 4 1.589 0.735 - - - 0.854 - - - - solute carrier family 30 (zinc transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-041014-347]
28. tmem136a ENSDARG00000024920 535 1.589 0.798 - - - - 0.791 - - - transmembrane protein 136a [Source:ZFIN;Acc:ZDB-GENE-000607-58]
29. anxa5a ENSDARG00000026406 19 1.583 - - - - - 0.838 0.745 - - annexin A5a [Source:ZFIN;Acc:ZDB-GENE-080220-29]
30. nefmb ENSDARG00000043697 2052 1.582 0.825 - - - - 0.757 - - - neurofilament, medium polypeptide b [Source:ZFIN;Acc:ZDB-GENE-070103-4]
31. C9H3orf17 C9H3orf17 69 1.58 0.854 - - - - - 0.726 - -
32. prrt1 ENSDARG00000062208 368 1.58 0.878 - - - - 0.702 - - - proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
33. mapk11 ENSDARG00000045836 846 1.577 0.853 - - - - 0.724 - - - mitogen-activated protein kinase 11 [Source:ZFIN;Acc:ZDB-GENE-040625-75]
34. si:rp71-36n21.1 93 1.575 0.735 - - - - - 0.840 - - si:rp71-36n21.1
35. C8H1orf106 C8H1orf106 2690 1.574 0.805 - - - - 0.769 - - -
36. CR388416.1 CR388416.1 3 1.566 - - - - 0.821 - 0.745 - -
37. lrrtm1 ENSDARG00000052713 1041 1.563 0.771 - - - - 0.792 - - - leucine rich repeat transmembrane neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-050506-80]
38. inab ENSDARG00000053248 3239 1.563 0.815 - - - - 0.748 - - - internexin neuronal intermediate filament protein, alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-83]
39. gas7a ENSDARG00000074443, ENSDARG00000111294 250 1.562 0.714 - - - - 0.848 - - - growth arrest-specific 7a [Source:ZFIN;Acc:ZDB-GENE-130128-1]
40. draxin ENSDARG00000058256, ENSDARG00000111676 266 1.549 0.758 - - - - 0.791 - - - dorsal inhibitory axon guidance protein [Source:ZFIN;Acc:ZDB-GENE-050913-20]
41. LMTK3 LMTK3 222 1.547 0.759 - - - - 0.788 - - -
42. tmem59l ENSDARG00000003655 1536 1.547 0.730 - - - - 0.817 - - - transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
43. NSUN6 ENSDARG00000103478 29 1.545 0.777 - - - - - - - 0.768 NOL1/NOP2/Sun domain family, member 6 [Source:ZFIN;Acc:ZDB-GENE-080808-8]
44. ncam2 ENSDARG00000017466 175 1.543 0.777 - - - - 0.766 - - - neural cell adhesion molecule 2 [Source:ZFIN;Acc:ZDB-GENE-010822-1]
45. AGO1 ENSDARG00000092644 4521 1.537 0.750 - - - - 0.787 - - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
46. si:dkey-122c11.10 si:dkey-122c11.10 63 1.536 - - - - - - 0.832 - 0.704
47. jag1a ENSDARG00000030289 1275 1.535 0.750 - - - - 0.785 - - - jagged 1a [Source:ZFIN;Acc:ZDB-GENE-011128-2]
48. cacna1da ENSDARG00000102773 114 1.535 0.707 - - - - 0.828 - - - calcium channel, voltage-dependent, L type, alpha 1D subunit, a [Source:ZFIN;Acc:ZDB-GENE-030616-135]
49. lgi2b ENSDARG00000069701, ENSDARG00000116343 66 1.534 0.705 - - - - 0.829 - - - leucine-rich repeat LGI family, member 2b [Source:ZFIN;Acc:ZDB-GENE-060217-3]
50. jak3 ENSDARG00000010252 11 1.528 - - - - 0.824 - - - 0.704 Janus kinase 3 (a protein tyrosine kinase, leukocyte) [Source:ZFIN;Acc:ZDB-GENE-070725-4]
51. dnajc5aa ENSDARG00000042948 2885 1.523 0.791 - - - - 0.732 - - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
52. nefma ENSDARG00000021351 790 1.523 0.816 - - - - 0.707 - - - neurofilament, medium polypeptide a [Source:ZFIN;Acc:ZDB-GENE-050522-205]
53. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 1.522 0.790 - - - - 0.732 - - - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
54. kcnd1 ENSDARG00000074746 153 1.521 0.810 - - - - 0.711 - - - potassium voltage-gated channel, Shal-related subfamily, member 1 [Source:ZFIN;Acc:ZDB-GENE-081105-40]
55. cspg5a ENSDARG00000069981 1699 1.509 0.807 - - - - 0.702 - - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
56. dbx2 2971 1.47 0.754 - - - - 0.716 - - - developing brain homeobox 2
57. kirrel3a ENSDARG00000075806 36 1.417 - - - - 0.705 0.712 - - - kirre like nephrin family adhesion molecule 3a [Source:ZFIN;Acc:ZDB-GENE-091117-44]
58. CABZ01030094.1 CABZ01030094.1 98 1 1.000 - - - - - - - -
59. cdkl5 ENSDARG00000015240 68 1 - - - - - 1.000 - - - cyclin-dependent kinase-like 5 [Source:ZFIN;Acc:ZDB-GENE-081022-110]
60. zgc:171626 zgc:171626 42 1 - - - - - - 1.000 - -
61. tmem178 ENSDARG00000020758 77 1 1.000 - - - - - - - - transmembrane protein 178 [Source:ZFIN;Acc:ZDB-GENE-060929-756]
62. myo18ab ENSDARG00000061862 124 1 - - - - - - 1.000 - - myosin XVIIIAb [Source:ZFIN;Acc:ZDB-GENE-080423-1]
63. CU179656.1 ENSDARG00000107086 270 0.996 0.996 - - - - - - - -
64. tlx3b ENSDARG00000017615, ENSDARG00000114069 84 0.989 - - - - - 0.989 - - - T cell leukemia homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-021021-1]
65. tlx2 ENSDARG00000011273 870 0.984 0.984 - - - - - - - - T cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020208-1]
66. dusp3a ENSDARG00000061255, ENSDARG00000113934 328 0.981 0.981 - - - - - - - - dual specificity phosphatase 3a [Source:ZFIN;Acc:ZDB-GENE-111207-3]
67. syt9a ENSDARG00000003994 298 0.98 0.980 - - - - - - - - synaptotagmin IXa [Source:ZFIN;Acc:ZDB-GENE-031002-18]
68. nmnat2 ENSDARG00000004580 370 0.977 0.977 - - - - - - - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
69. rab6ba ENSDARG00000034522 495 0.976 0.976 - - - - - - - - RAB6B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-050809-136]
70. GPR158 GPR158 64 0.974 0.974 - - - - - - - -
71. fam43b ENSDARG00000070222 92 0.968 - - - - - 0.968 - - - family with sequence similarity 43, member B [Source:ZFIN;Acc:ZDB-GENE-040912-11]
72. fam49a ENSDARG00000006672 939 0.967 - - - - - 0.967 - - - family with sequence similarity 49, member A [Source:ZFIN;Acc:ZDB-GENE-031002-50]
73. zgc:112001 ENSDARG00000078034 93 0.967 - - - - - 0.967 - - - zgc:112001 [Source:ZFIN;Acc:ZDB-GENE-050417-178]
74. wnt11r ENSDARG00000014796 2860 0.967 0.967 - - - - - - - - wingless-type MMTV integration site family, member 11, related [Source:ZFIN;Acc:ZDB-GENE-980526-249]
75. lhfpl3 ENSDARG00000021595 107 0.967 - - - - - 0.967 - - - LHFPL tetraspan subfamily member 3 [Source:ZFIN;Acc:ZDB-GENE-040801-180]
76. cdh7 582 0.966 - - - - - 0.966 - - - cadherin 7, type 2, transcript variant X1
77. pou4f1 ENSDARG00000005559 821 0.963 0.963 - - - - - - - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
78. atp2b3b ENSDARG00000023445 1424 0.957 0.957 - - - - - - - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
79. robo4 ENSDARG00000009387 98 0.954 - - - - - - 0.954 - - roundabout, axon guidance receptor, homolog 4 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-020809-1]
80. PDZD4 ENSDARG00000090564 131 0.954 0.954 - - - - - - - - PDZ domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21167]
81. STEAP2 ENSDARG00000062887 59 0.954 - - - - - - 0.954 - - STEAP family member 2, metalloreductase [Source:ZFIN;Acc:ZDB-GENE-131121-79]
82. mapk10 ENSDARG00000102730 108 0.954 - - - - - - 0.954 - - mitogen-activated protein kinase 10 [Source:ZFIN;Acc:ZDB-GENE-051120-117]
83. asic4a ENSDARG00000025162 25 0.954 0.954 - - - - - - - - acid-sensing (proton-gated) ion channel family member 4a [Source:ZFIN;Acc:ZDB-GENE-040513-5]
84. lhx5 ENSDARG00000057936 785 0.954 0.954 - - - - - - - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
85. npb ENSDARG00000078828 230 0.954 0.954 - - - - - - - - neuropeptide B [Source:ZFIN;Acc:ZDB-GENE-040107-40]
86. si:ch211-247j9.1 ENSDARG00000079283 217 0.953 - - - - - 0.953 - - - si:ch211-247j9.1 [Source:ZFIN;Acc:ZDB-GENE-091204-212]
87. KCNAB2 KCNAB2 129 0.948 0.948 - - - - - - - -
88. rab36 ENSDARG00000014058 70 0.948 - - - - - 0.948 - - - RAB36, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040910-5]
89. tac3a ENSDARG00000093089, ENSDARG00000110723 75 0.945 - - - - - 0.945 - - - tachykinin 3a [Source:ZFIN;Acc:ZDB-GENE-090313-253]
90. hpca ENSDARG00000018397, ENSDARG00000110115 3866 0.943 0.943 - - - - - - - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
91. zic5 ENSDARG00000016022 1034 0.942 0.942 - - - - - - - - zic family member 5 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040622-1]
92. htr1ab ENSDARG00000057098, ENSDARG00000113207 92 0.94 0.940 - - - - - - - - 5-hydroxytryptamine (serotonin) receptor 1A b [Source:ZFIN;Acc:ZDB-GENE-090409-2]
93. si:dkey-24g18.3 si:dkey-24g18.3 60 0.939 - - - - - 0.939 - - -
94. adam23a ENSDARG00000062323 580 0.938 0.938 - - - - - - - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
95. VGLL3 ENSDARG00000038305 242 0.938 - - - - - - 0.938 - - vestigial-like family member 3 [Source:ZFIN;Acc:ZDB-GENE-130530-600]
96. otpb ENSDARG00000058379 1143 0.937 - - - - - 0.937 - - - orthopedia homeobox b [Source:ZFIN;Acc:ZDB-GENE-990708-7]
97. CR974475.2 CR974475.2 38 0.937 - - - - - 0.937 - - -
98. SLC35F4 ENSDARG00000103124 55 0.937 - - - - - 0.937 - - - solute carrier family 35, member F4 [Source:ZFIN;Acc:ZDB-GENE-131121-49]
99. htr3a ENSDARG00000089212 51 0.937 0.937 - - - - - - - - 5-hydroxytryptamine (serotonin) receptor 3A [Source:ZFIN;Acc:ZDB-GENE-071012-5]
100. adcyap1b ENSDARG00000027740 1539 0.937 0.937 - - - - - - - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]

There are 1038 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA