Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for mid2

Gene Name Gene ID Reads Annotation
mid2 ENSDARG00000034871 1001 midline 2 [Source:ZFIN;Acc:ZDB-GENE-090220-1]










Genes with expression patterns similar to mid2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. mid2 ENSDARG00000034871 1001 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 midline 2 [Source:ZFIN;Acc:ZDB-GENE-090220-1]
2. map3k1 ENSDARG00000098405 3043 1.745 - 0.745 - - - - 1.000 - - mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-090313-412]
3. tnnt2a ENSDARG00000020610 313 1.63 0.815 0.815 - - - - - - - troponin T type 2a (cardiac) [Source:ZFIN;Acc:ZDB-GENE-000626-1]
4. camkmt ENSDARG00000095224 1204 1.609 - 0.862 - - - 0.747 - - - calmodulin-lysine N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-090313-49]
5. rsph3 ENSDARG00000043470 74 1.598 0.884 - 0.714 - - - - - - radial spoke head 3 homolog [Source:ZFIN;Acc:ZDB-GENE-040724-173]
6. SLC26A6 ENSDARG00000055835, ENSDARG00000097292 62 1.592 - 0.791 - - 0.801 - - - - solute carrier family 26, member 6 [Source:ZFIN;Acc:ZDB-GENE-081105-83]
7. si:ch211-102c2.8 ENSDARG00000093823 168 1.59 0.801 0.789 - - - - - - - si:ch211-102c2.8 [Source:ZFIN;Acc:ZDB-GENE-081104-98]
8. si:dkey-4c15.14 ENSDARG00000094410 107 1.582 0.739 0.843 - - - - - - - si:dkey-4c15.14 [Source:ZFIN;Acc:ZDB-GENE-050420-79]
9. MTFMT ENSDARG00000005448 189 1.574 0.791 - - - - 0.783 - - - mitochondrial methionyl-tRNA formyltransferase [Source:ZFIN;Acc:ZDB-GENE-060929-120]
10. spon1a ENSDARG00000010029 355 1.565 - 0.810 - - 0.755 - - - - spondin 1a [Source:ZFIN;Acc:ZDB-GENE-000427-9]
11. si:dkey-225f23.4 ENSDARG00000102520 86 1.562 - - 0.807 - 0.755 - - - - si:dkey-225f23.4 [Source:NCBI gene;Acc:100005326]
12. si:ch211-188c16.1 ENSDARG00000077288 16 1.532 - 0.815 0.717 - - - - - - si:ch211-188c16.1 [Source:ZFIN;Acc:ZDB-GENE-070912-162]
13. tdrd9 ENSDARG00000013453 22 1.527 0.739 0.788 - - - - - - - tudor domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-090313-193]
14. efhc1 ENSDARG00000009743 113 1.527 - - 0.704 - 0.823 - - - - EF-hand domain (C-terminal) containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1300]
15. si:ch211-202h22.7 ENSDARG00000073912 18 1.51 - 0.746 - 0.764 - - - - - si:ch211-202h22.7 [Source:ZFIN;Acc:ZDB-GENE-090313-77]
16. zgc:174651 zgc:174651 90 1.484 - 0.702 - - 0.782 - - - -
17. si:dkey-148f10.4 ENSDARG00000094627, ENSDARG00000109786 236 1.455 0.704 - 0.751 - - - - - - si:dkey-148f10.4 [Source:ZFIN;Acc:ZDB-GENE-060503-292]
18. FOXN2 FOXN2 118 1.443 0.739 0.704 - - - - - - -
19. eif2d ENSDARG00000012929 2624 1 - - - - - - 1.000 - - eukaryotic translation initiation factor 2D [Source:ZFIN;Acc:ZDB-GENE-040426-1226]
20. sipa1l2 ENSDARG00000061640 4545 1 - - - - - - 1.000 - - signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
21. mrpl13 ENSDARG00000056903 2768 1 - - - - - - 1.000 - - mitochondrial ribosomal protein L13 [Source:ZFIN;Acc:ZDB-GENE-050522-167]
22. MAST1_1 MAST1_1 1595 1 - - - - - - 1.000 - -
23. rbfox2 ENSDARG00000052182 6621 1 - - - - - - 1.000 - - RNA binding fox-1 homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2464]
24. TMEM45A ENSDARG00000070743 1669 1 - - - - - - 1.000 - - transmembrane protein 45a [Source:ZFIN;Acc:ZDB-GENE-050522-34]
25. CRELD1 794 1 - - - - - - 1.000 - - cysteine rich with EGF like domains 1
26. myo10 ENSDARG00000017004 2191 1 - - - - - - 1.000 - - myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
27. spen ENSDARG00000074245, ENSDARG00000116696 3054 1 - - - - - - 1.000 - - spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]
28. shoc2 ENSDARG00000040853, ENSDARG00000112058, ENSDARG00000116564 2264 1 - - - - - - 1.000 - - SHOC2 leucine-rich repeat scaffold protein [Source:ZFIN;Acc:ZDB-GENE-050208-523]
29. dcun1d1 ENSDARG00000099642 2043 1 - - - - - - 1.000 - - DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5443]
30. cd2bp2 ENSDARG00000027357, ENSDARG00000115040, ENSDARG00000115297 1808 1 - - - - - - 1.000 - - CD2 (cytoplasmic tail) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-925]
31. oxr1b ENSDARG00000063310 929 1 - - - - - - 1.000 - - oxidation resistance 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2438]
32. zgc:73340 823 1 - - - - - - 1.000 - - zgc:73340
33. m6pr ENSDARG00000018432 1411 1 - - - - - - 1.000 - - mannose-6-phosphate receptor (cation dependent) [Source:ZFIN;Acc:ZDB-GENE-040426-2285]
34. TUB ENSDARG00000062165, ENSDARG00000111083 871 1 - - - - - - 1.000 - - tubby bipartite transcription factor [Source:ZFIN;Acc:ZDB-GENE-121009-1]
35. lamb2 ENSDARG00000002084 3265 0.999 - - - - - - 0.999 - - laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
36. aldh9a1b ENSDARG00000037061 2638 0.999 - - - - - - 0.999 - - aldehyde dehydrogenase 9 family, member A1b [Source:ZFIN;Acc:ZDB-GENE-040120-5]
37. eif5 ENSDARG00000003681 7986 0.999 - - - - - - 0.999 - - eukaryotic translation initiation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-975]
38. wu:fb12e11 wu:fb12e11 2332 0.999 - - - - - - 0.999 - -
39. tp63 ENSDARG00000044356, ENSDARG00000113627 5686 0.998 - - - - - - 0.998 - - tumor protein p63 [Source:ZFIN;Acc:ZDB-GENE-030819-1]
40. calb2b ENSDARG00000036344 2417 0.998 - - - - - - 0.998 - - calbindin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1668]
41. psmd14 ENSDARG00000063100 15711 0.998 - - - - - - 0.998 - - proteasome 26S subunit, non-ATPase 14 [Source:ZFIN;Acc:ZDB-GENE-070410-56]
42. mtp_1 3298 0.998 - - - - - - 0.998 - - microsomal triglyceride transfer protein
43. pak2a ENSDARG00000068177 8931 0.998 - - - - - - 0.998 - - p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
44. mcm5 ENSDARG00000019507 6407 0.997 - - - - - - 0.997 - - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
45. gpt2l ENSDARG00000019541 3397 0.997 - - - - - - 0.997 - - glutamic pyruvate transaminase (alanine aminotransferase) 2, like [Source:ZFIN;Acc:ZDB-GENE-050302-11]
46. tia1l ENSDARG00000026476, ENSDARG00000109827 9378 0.997 - - - - - - 0.997 - - cytotoxic granule-associated RNA binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2167]
47. thrap3b ENSDARG00000098228 4396 0.997 - - - - - - 0.997 - - thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
48. psmb3 ENSDARG00000013938 10744 0.997 - - - - - - 0.997 - - proteasome subunit beta 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2682]
49. hoxc6a ENSDARG00000070343 2839 0.997 - - - - - - 0.997 - - homeobox C6a [Source:ZFIN;Acc:ZDB-GENE-990415-113]
50. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 0.996 - - - - - - 0.996 - - high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
51. ddost ENSDARG00000037318 10904 0.996 - - - - - - 0.996 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-040426-2147]
52. elavl1 11672 0.996 - - - - - - 0.996 - - ELAV like RNA binding protein 1, transcript variant X3
53. zgc:92066 ENSDARG00000031776, ENSDARG00000116586 12826 0.996 - - - - - - 0.996 - - zgc:92066 [Source:ZFIN;Acc:ZDB-GENE-040718-72]
54. hnrnph1l ENSDARG00000005551 8727 0.994 - - - - - - 0.994 - - heterogeneous nuclear ribonucleoprotein H1, like [Source:ZFIN;Acc:ZDB-GENE-030131-275]
55. ap3m1 ENSDARG00000029928 3772 0.993 - - - - - - 0.993 - - adaptor related protein complex 3 subunit mu 1 [Source:ZFIN;Acc:ZDB-GENE-021015-2]
56. PLCXD1_4 PLCXD1_4 3673 0.993 - - - - - - 0.993 - -
57. cox7a2a ENSDARG00000053217 12564 0.993 - - - - - - 0.993 - - cytochrome c oxidase subunit 7A2a [Source:ZFIN;Acc:ZDB-GENE-050522-153]
58. IGFN1 IGFN1 5030 0.993 - - - - - - 0.993 - -
59. s100v2 ENSDARG00000070702 8645 0.993 - - - - - - 0.993 - - S100 calcium binding protein V2 [Source:ZFIN;Acc:ZDB-GENE-030131-8909]
60. MYOM2_1 MYOM2_1 4054 0.993 - - - - - - 0.993 - -
61. marcksl1b ENSDARG00000035715 37390 0.992 - - - - - - 0.992 - - MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
62. AL929007.1 AL929007.1 3649 0.991 - - - - - - 0.991 - -
63. ank1 ank1 5209 0.99 - - - - - - 0.990 - -
64. mdh1a mdh1a 11035 0.99 - - - - - - 0.990 - -
65. vtna ENSDARG00000055388 2635 0.99 - - - - - - 0.990 - - vitronectin a [Source:ZFIN;Acc:ZDB-GENE-050522-440]
66. rps11 ENSDARG00000053058 16233 0.989 - - - - - - 0.989 - - ribosomal protein S11 [Source:ZFIN;Acc:ZDB-GENE-040426-2701]
67. khdrbs1b ENSDARG00000070475 18157 0.988 - - - - - - 0.988 - - KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344]
68. nucks1a ENSDARG00000078473 28285 0.987 - - - - - - 0.987 - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
69. gart ENSDARG00000101089 6062 0.985 - - - - - - 0.985 - - phosphoribosylglycinamide formyltransferase [Source:ZFIN;Acc:ZDB-GENE-000616-14]
70. serf2 ENSDARG00000074340, ENSDARG00000117120 21385 0.983 - - - - - - 0.983 - - small EDRK-rich factor 2 [Source:ZFIN;Acc:ZDB-GENE-041108-1]
71. zgc:113232 ENSDARG00000040118, ENSDARG00000116977 5865 0.981 - - - - - - 0.981 - - zgc:113232 [Source:ZFIN;Acc:ZDB-GENE-050327-86]
72. eif1b ENSDARG00000012688 34711 0.972 - - - - - - 0.972 - - eukaryotic translation initiation factor 1B [Source:ZFIN;Acc:ZDB-GENE-030131-956]
73. pmp22a ENSDARG00000105223, ENSDARG00000115339 9849 0.96 - - - - - - 0.960 - - peripheral myelin protein 22a [Source:ZFIN;Acc:ZDB-GENE-030131-6757]
74. eef1g ENSDARG00000056119 52958 0.953 - - - - - - 0.953 - - eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
75. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 46072 0.943 - - - - - - 0.943 - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
76. gro1 gro1 81 0.933 - 0.933 - - - - - - -
77. CABZ01085657.1 CABZ01085657.1 23 0.932 - 0.932 - - - - - - -
78. SBK1 SBK1 154 0.926 - 0.926 - - - - - - -
79. plxna4 ENSDARG00000019328 782 0.919 - 0.919 - - - - - - - plexin A4 [Source:ZFIN;Acc:ZDB-GENE-030131-4663]
80. si:dkey-54g2.6 si:dkey-54g2.6 252 0.914 - 0.914 - - - - - - -
81. C5H3orf30 C5H3orf30 63 0.913 - 0.913 - - - - - - -
82. pm20d1.2 ENSDARG00000062096 97 0.912 0.912 - - - - - - - - peptidase M20 domain containing 1, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-061013-637]
83. rpl17 ENSDARG00000057556 60281 0.904 - - - - - - 0.904 - - ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
84. Metazoa_SRP_8 Metazoa_SRP_8 153 0.904 - 0.904 - - - - - - -
85. CPNE4 CPNE4 268 0.903 - 0.903 - - - - - - -
86. hist2h3c ENSDARG00000094154 124 0.9 - 0.900 - - - - - - - histone cluster 2, H3c [Source:ZFIN;Acc:ZDB-GENE-070424-8]
87. sv2 ENSDARG00000091833 22 0.899 - 0.899 - - - - - - - synaptic vesicle glycoprotein 2 [Source:ZFIN;Acc:ZDB-GENE-000607-80]
88. spon1b ENSDARG00000023694, ENSDARG00000110889 586 0.896 - 0.896 - - - - - - - spondin 1b [Source:ZFIN;Acc:ZDB-GENE-000427-10]
89. si:ch211-245n8.4 ENSDARG00000096222 230 0.895 - 0.895 - - - - - - - si:ch211-245n8.4 [Source:ZFIN;Acc:ZDB-GENE-110914-56]
90. nexmifb ENSDARG00000029296 416 0.893 - 0.893 - - - - - - - neurite extension and migration factor b [Source:ZFIN;Acc:ZDB-GENE-140106-18]
91. ildr2 ENSDARG00000014180 791 0.892 - 0.892 - - - - - - - immunoglobulin-like domain containing receptor 2 [Source:ZFIN;Acc:ZDB-GENE-050706-83]
92. CR339053.3 CR339053.3 244 0.89 - 0.890 - - - - - - -
93. ZNF800 ZNF800 72 0.889 - 0.889 - - - - - - -
94. abhd5a 130 0.888 - 0.888 - - - - - - - abhydrolase domain containing 5a, transcript variant X1
95. cox5b2 ENSDARG00000068738 182 0.888 - 0.888 - - - - - - - cytochrome c oxidase subunit 5B2 [Source:ZFIN;Acc:ZDB-GENE-060825-71]
96. si:dkey-15h8.14 si:dkey-15h8.14 139 0.887 - - - - 0.887 - - - -
97. gtdc2 gtdc2 523 0.887 - 0.887 - - - - - - -
98. pex11a ENSDARG00000060707, ENSDARG00000111994 101 0.886 - 0.886 - - - - - - - peroxisomal biogenesis factor 11 alpha [Source:ZFIN;Acc:ZDB-GENE-050419-121]
99. nalcn ENSDARG00000001835 294 0.885 - 0.885 - - - - - - - sodium leak channel, non-selective [Source:ZFIN;Acc:ZDB-GENE-050410-12]
100. fzd5 ENSDARG00000025420 1082 0.884 - 0.884 - - - - - - - frizzled class receptor 5 [Source:ZFIN;Acc:ZDB-GENE-990415-218]

There are 675 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA