Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for mdkb

Gene Name Gene ID Reads Annotation
mdkb ENSDARG00000020708 5393 midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]










Genes with expression patterns similar to mdkb

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. mdkb ENSDARG00000020708 5393 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
2. cspg5a ENSDARG00000069981 1699 4.819 0.819 - 0.754 0.823 - - 0.854 0.744 0.825 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
3. plp1a ENSDARG00000103732 3544 4.284 0.839 - - 0.883 - 0.933 0.839 - 0.790 proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
4. gsx1 ENSDARG00000035735 1243 4.189 0.822 - 0.919 - - 0.753 0.815 0.880 - GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
5. zic3 ENSDARG00000071497 1448 4.026 0.797 - - - - 0.919 0.739 0.773 0.798 zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030708-2]
6. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 3.783 0.711 - 0.778 0.863 - 0.702 - - 0.729 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
7. stmn1b ENSDARG00000033655 9491 3.555 0.890 - - - - 0.987 0.831 - 0.847 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
8. pou4f1 ENSDARG00000005559 821 3.508 0.967 - - - 0.909 0.778 0.854 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
9. lhx5 ENSDARG00000057936 785 3.49 0.947 - - - - 0.970 0.852 - 0.721 LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
10. nrn1a ENSDARG00000071860 1311 3.484 0.919 - - - - 0.969 0.783 - 0.813 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
11. appb ENSDARG00000055543, ENSDARG00000109552 4461 3.479 - - - 0.826 0.916 0.922 0.815 - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
12. si:ch73-21g5.7 ENSDARG00000093156 9412 3.455 - - 0.900 0.782 - 0.943 0.830 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
13. mapk12b ENSDARG00000006409 2246 3.4 0.810 - - 0.814 - 0.953 0.823 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
14. necap1 ENSDARG00000020798 612 3.398 0.823 0.807 - - - 0.928 0.840 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
15. adam23a ENSDARG00000062323 580 3.374 0.901 - - 0.797 - 0.875 0.801 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
16. her4.1 ENSDARG00000056732 1264 3.363 - - 0.785 - - 0.891 0.848 - 0.839 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
17. hmgb3a ENSDARG00000056725 15668 3.344 0.813 - - - - 0.814 0.899 - 0.818 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
18. tuba1c ENSDARG00000055216 8384 3.311 0.835 - - - - 0.912 0.845 - 0.719 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
19. ZFHX3 ENSDARG00000103057 7759 3.308 0.814 - - 0.811 - 0.852 0.831 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
20. CLIP3 ENSDARG00000054456 734 3.29 0.772 - - 0.817 - 0.920 0.781 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
21. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 3.283 0.706 - - - - 0.927 0.804 - 0.846 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
22. her15.2 her15.2 1701 3.28 - - 0.763 - - 0.936 0.785 - 0.796
23. spock2 ENSDARG00000075393 791 3.277 0.760 0.723 - - - 0.977 0.817 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-090312-170]
24. ADAM22 ENSDARG00000060532 2259 3.277 - 0.711 - - - 0.960 0.811 - 0.795 ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
25. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 3.266 - - - 0.859 - 0.807 0.763 - 0.837 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
26. ndrg4 ENSDARG00000103937 1234 3.261 0.743 - - 0.822 - 0.916 0.780 - - NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
27. irx5a ENSDARG00000034043 1694 3.255 - - - - 0.941 0.846 0.713 - 0.755 iroquois homeobox 5a [Source:ZFIN;Acc:ZDB-GENE-010716-2]
28. pcdh1gc5 ENSDARG00000104826 10052 3.253 0.759 - - - - 0.952 0.834 0.708 - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
29. LANCL2 ENSDARG00000045465 1221 3.242 0.776 - - 0.864 - 0.798 0.804 - - LanC lantibiotic synthetase component C-like 2 (bacterial) [Source:ZFIN;Acc:ZDB-GENE-070209-191]
30. mex3b ENSDARG00000058369 1867 3.239 - - 0.714 - - 0.912 0.849 - 0.764 mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
31. nova2 ENSDARG00000017673 7685 3.232 0.734 - - - - 0.772 0.808 - 0.918 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
32. C8H1orf106 C8H1orf106 2690 3.227 0.837 0.793 - 0.874 - - 0.723 - -
33. pou4f2 ENSDARG00000069737 451 3.224 0.816 - - - - 0.876 0.707 - 0.825 POU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
34. hnrnpub ENSDARG00000004735 16496 3.152 0.738 - - 0.756 - 0.806 0.852 - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
35. syt3 ENSDARG00000075830 430 3.142 0.845 - - 0.797 - 0.750 0.750 - - synaptotagmin III [Source:ZFIN;Acc:ZDB-GENE-090601-1]
36. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 3.141 - - - 0.705 - 0.859 0.785 - 0.792 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
37. msi1 ENSDARG00000010710 2634 3.108 - - 0.760 - - 0.752 0.805 - 0.791 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
38. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 3.087 0.704 - 0.719 - - 0.944 - - 0.720 protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
39. nkain1 ENSDARG00000006859 1961 3.082 - - - - 0.922 0.713 0.708 0.739 - sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
40. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 3.079 - - - 0.724 - 0.826 0.713 - 0.816 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
41. irx1b ENSDARG00000056594 2224 3.015 0.702 - - - - 0.707 0.798 - 0.808 iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
42. ptprna ENSDARG00000058646 1327 3.014 - - 0.784 - - 0.754 0.763 0.713 - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
43. zic1 ENSDARG00000015567 2520 2.812 0.922 - 0.927 - - 0.963 - - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
44. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.803 0.959 - - - - 0.984 0.860 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
45. stmn2a ENSDARG00000033234 2272 2.782 0.955 - - - - 0.989 0.838 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
46. snap25a ENSDARG00000020609 4537 2.736 0.923 - - - - 0.915 0.898 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
47. ppp3ca ENSDARG00000004988 615 2.722 0.851 - - - - 0.954 0.917 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
48. gap43 ENSDARG00000099744 4114 2.715 0.964 - - - - 0.939 0.812 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
49. atp2b3b ENSDARG00000023445 1424 2.713 0.921 - - - - 0.976 0.816 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
50. TUSC5 TUSC5 1436 2.686 0.947 - - - - 0.977 0.762 - -
51. TUBB8P7_1 TUBB8P7_1 2722 2.684 0.909 - - - - 0.907 0.868 - -
52. pnoca ENSDARG00000025024 467 2.67 0.946 - - - - 0.965 0.759 - - prepronociceptin a [Source:ZFIN;Acc:ZDB-GENE-101229-1]
53. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 2.663 0.897 - - - - 0.942 0.824 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
54. rab3ab ENSDARG00000043835 1267 2.661 0.904 - - - - 0.915 0.842 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
55. SV2B SV2B 208 2.655 0.892 - - - - 0.931 0.832 - -
56. cadm3 ENSDARG00000057013 1545 2.651 0.939 - - - - 0.923 0.789 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
57. olig4 ENSDARG00000052610, ENSDARG00000116678 1704 2.649 0.849 - 0.898 - - 0.902 - - - oligodendrocyte transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3580]
58. syt11a ENSDARG00000057913 1145 2.627 0.828 - - - - 0.969 0.830 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
59. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 2.618 - - 0.856 - - 0.955 0.807 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
60. olfm1b ENSDARG00000014053 1392 2.617 0.837 - - - - 0.940 0.840 - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
61. MAP1A MAP1A 847 2.614 0.878 - - - - 0.937 0.799 - -
62. mllt11 ENSDARG00000071026 2518 2.607 0.860 - - - - 0.930 0.817 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
63. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.603 0.902 - - - - 0.884 0.817 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
64. amph ENSDARG00000007663 599 2.6 0.926 - - - - 0.886 0.788 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
65. cers6 ENSDARG00000053583 247 2.595 0.819 - - - - 0.924 0.852 - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
66. atl1 ENSDARG00000060481 251 2.594 0.792 - - - - 0.967 0.835 - - atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]
67. igsf9a ENSDARG00000075864 1870 2.591 0.866 - 0.794 - - 0.931 - - - immunoglobulin superfamily, member 9a [Source:ZFIN;Acc:ZDB-GENE-060503-288]
68. st18 663 2.588 - - - 0.806 - 0.967 0.815 - - suppression of tumorigenicity 18, zinc finger
69. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.587 0.882 - - - - 0.910 0.795 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
70. TPPP2 ENSDARG00000035338, ENSDARG00000113727 298 2.586 0.816 - - - - 0.972 0.798 - - tubulin polymerization-promoting protein family member 2 [Source:ZFIN;Acc:ZDB-GENE-140106-24]
71. tuba2 ENSDARG00000045014 1490 2.583 0.854 - - - - 0.962 0.767 - - tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
72. MAP6 MAP6 643 2.581 0.841 - - - - 0.885 0.855 - -
73. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 2.579 - - 0.924 - - 0.936 0.719 - - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
74. nrxn1a ENSDARG00000061647, ENSDARG00000111866 1069 2.578 0.801 - - - - 0.951 0.826 - - neurexin 1a [Source:ZFIN;Acc:ZDB-GENE-070206-1]
75. slc1a3a ENSDARG00000104431 9888 2.573 0.883 - - - - 0.935 0.755 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
76. slc1a2b ENSDARG00000102453 3136 2.572 0.904 - - - - 0.895 0.773 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
77. eno2 ENSDARG00000014287 2162 2.572 0.826 - - - - 0.939 0.807 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
78. si:ch211-11c15.3 si:ch211-11c15.3 1279 2.569 0.841 - - - - 0.970 0.758 - -
79. CT030046.1 CT030046.1 190 2.567 0.888 - - - - 0.916 0.763 - -
80. dpysl5a ENSDARG00000011141 1827 2.564 - - 0.788 - - 0.956 0.820 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
81. MAPK8IP1_1 MAPK8IP1_1 186 2.564 0.939 - - - - 0.859 0.766 - -
82. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.558 0.779 - - - - 0.957 0.822 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
83. prrt1 ENSDARG00000062208 368 2.556 0.940 - - - - 0.788 0.828 - - proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
84. slc32a1 ENSDARG00000059775 1092 2.554 0.793 - - - - 0.904 0.857 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
85. cd99l2 ENSDARG00000056722 5036 2.553 0.789 - - - - 0.912 - - 0.852 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
86. dpysl3 ENSDARG00000002587 4381 2.553 0.917 - - - - 0.786 0.850 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
87. C7H4orf48 C7H4orf48 1455 2.55 0.768 - - - - 0.973 0.809 - -
88. pcsk1nl ENSDARG00000076170 1232 2.55 0.723 - - - - 0.967 0.860 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
89. rtn1b ENSDARG00000021143 1682 2.545 0.802 - - - - 0.949 0.794 - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
90. sez6l2 ENSDARG00000076052 360 2.543 0.730 - - - - 0.984 0.829 - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
91. upf3a ENSDARG00000069297, ENSDARG00000111067 196 2.542 0.780 - - - - 0.907 0.855 - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
92. atpv0e2 ENSDARG00000059057 585 2.541 0.861 - - - - 0.894 0.786 - - ATPase H+ transporting V0 subunit e2 [Source:ZFIN;Acc:ZDB-GENE-050522-135]
93. scrt2 ENSDARG00000056175 4331 2.539 0.854 - - - - 0.930 0.755 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
94. gabra5 ENSDARG00000070730 156 2.539 0.814 - - - - 0.896 0.829 - - gamma-aminobutyric acid (GABA) A receptor, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-081104-30]
95. btg2 ENSDARG00000020298 6616 2.534 - - - - 0.917 0.880 0.737 - - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
96. ubtf ENSDARG00000035066 4070 2.534 - - - 0.772 0.933 0.829 - - - upstream binding transcription factor [Source:ZFIN;Acc:ZDB-GENE-030616-252]
97. LDLRAD4 LDLRAD4 1237 2.533 - - - 0.837 - 0.867 0.829 - -
98. sh3gl2 sh3gl2 1305 2.531 0.805 - - - - 0.903 0.823 - -
99. sncgb ENSDARG00000109715 1014 2.531 0.752 - - - - 0.955 0.824 - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
100. TUBB2A TUBB2A 142 2.531 0.861 - - - - 0.926 0.744 - -

There are 2714 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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