Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lsm8

Gene Name Gene ID Reads Annotation
lsm8 ENSDARG00000091656, ENSDARG00000111914 2751 LSM8 homolog, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-070629-3]










Genes with expression patterns similar to lsm8

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lsm8 ENSDARG00000091656, ENSDARG00000111914 2751 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LSM8 homolog, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-070629-3]
2. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 2.63 0.948 - 0.913 - - - - - 0.769 RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
3. ptges3a ENSDARG00000037284, ENSDARG00000113517 3999 2.574 0.974 - 0.895 - - - 0.705 - - prostaglandin E synthase 3a (cytosolic) [Source:ZFIN;Acc:ZDB-GENE-040426-2200]
4. smg5 ENSDARG00000041481 1286 2.5 - - 0.955 - 0.820 - - - 0.725 SMG5 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-050913-144]
5. eif3ja ENSDARG00000012603 6324 2.499 - - 0.942 - 0.847 - 0.710 - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
6. ppp2r2a ppp2r2a 5785 2.491 0.968 - - - - - 0.809 0.714 -
7. carm1 ENSDARG00000018698 5599 2.475 0.970 - - 0.790 - - 0.715 - - coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
8. lpl ENSDARG00000087697 2578 2.469 - - 0.931 - 0.800 0.738 - - - lipoprotein lipase [Source:ZFIN;Acc:ZDB-GENE-990415-139]
9. kpna2 ENSDARG00000038066 7954 2.428 0.930 - - 0.723 - - - - 0.775 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:ZFIN;Acc:ZDB-GENE-040718-22]
10. vdac1 ENSDARG00000045132 8051 2.403 - - 0.848 - - 0.713 0.842 - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
11. snrpd1 ENSDARG00000011648 8615 2.358 - - - 0.741 0.784 - - 0.833 - small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]
12. ldb1a ENSDARG00000010137 3035 2.358 - - 0.952 - - 0.703 - - 0.703 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
13. rbb4 rbb4 15541 2.337 0.872 - - - - - 0.715 - 0.750
14. hnrnpub ENSDARG00000004735 16496 2.311 - - - - 0.747 - 0.815 - 0.749 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
15. wasf3 wasf3 3287 2.287 - - 0.701 - 0.872 - 0.714 - -
16. cul4b ENSDARG00000060510 6053 2.282 - - 0.704 - 0.800 - 0.778 - - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
17. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 2.267 - - - 0.740 - - 0.722 - 0.805 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
18. smc2 ENSDARG00000017744, ENSDARG00000114076 2271 2.234 - 0.708 - - 0.805 - 0.721 - - structural maintenance of chromosomes 2 [Source:ZFIN;Acc:ZDB-GENE-030131-105]
19. nxf1 ENSDARG00000055076 3251 2.169 - - - - - 0.735 0.720 - 0.714 nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
20. phf12a ENSDARG00000074303 1025 1.946 0.988 - 0.958 - - - - - - PHD finger protein 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3876]
21. selt1b 1396 1.942 0.991 - 0.951 - - - - - - selenoprotein T, 1b
22. hoxb3a ENSDARG00000029263 5493 1.898 0.978 - 0.920 - - - - - - homeobox B3a [Source:ZFIN;Acc:ZDB-GENE-990415-104]
23. ube2v1 ENSDARG00000041875 5739 1.883 0.940 - 0.943 - - - - - - ubiquitin-conjugating enzyme E2 variant 1 [Source:ZFIN;Acc:ZDB-GENE-051030-102]
24. wbscr16 wbscr16 791 1.811 0.985 - - - 0.826 - - - -
25. tm2d3 ENSDARG00000076618 2310 1.797 - - 0.947 - 0.850 - - - - TM2 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070620-20]
26. ELMSAN1_1 ELMSAN1_1 1337 1.796 0.988 0.808 - - - - - - -
27. nr2f1b ENSDARG00000017168 1487 1.788 0.987 - - - 0.801 - - - - nuclear receptor subfamily 2, group F, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1438]
28. dhcr7 ENSDARG00000103226 673 1.781 0.990 - - - 0.791 - - - - 7-dehydrocholesterol reductase [Source:ZFIN;Acc:ZDB-GENE-030912-9]
29. ctnnbip1 ENSDARG00000038954 2519 1.77 - - 0.970 - - 0.800 - - - catenin, beta interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-3]
30. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 1.769 0.983 - - - 0.786 - - - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
31. lrp12 ENSDARG00000098845 999 1.769 - - 0.954 - 0.815 - - - - low density lipoprotein receptor-related protein 12 [Source:ZFIN;Acc:ZDB-GENE-060503-399]
32. nova1 ENSDARG00000020178 4129 1.768 0.977 - 0.791 - - - - - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
33. cltcb ENSDARG00000090716 5544 1.768 0.952 - - - - - 0.816 - - clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
34. get4 ENSDARG00000024398 1818 1.766 0.986 - - - 0.780 - - - - golgi to ER traffic protein 4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5399]
35. tbx2a ENSDARG00000018025, ENSDARG00000109541 1183 1.763 - - 0.943 - 0.820 - - - - T-box 2a [Source:ZFIN;Acc:ZDB-GENE-990917-4]
36. wdr3 ENSDARG00000011079 1403 1.756 0.990 - - - 0.766 - - - - WD repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9830]
37. taf7 ENSDARG00000019572 1305 1.755 0.982 - - - - 0.773 - - - TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-020419-18]
38. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 1.752 0.970 - - - - - 0.782 - - chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
39. zc4h2 ENSDARG00000015314, ENSDARG00000112180 5141 1.75 0.984 - - - - - - 0.766 - zinc finger, C4H2 domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-2207]
40. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 1.743 0.978 - - - - - - - 0.765 structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
41. eva1ba ENSDARG00000102701 1480 1.73 - - 0.941 - 0.789 - - - - eva-1 homolog Ba (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-030131-8941]
42. sash1a ENSDARG00000007179 2497 1.725 - - 0.946 - - - 0.779 - - SAM and SH3 domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9960]
43. LPHN2 LPHN2 1971 1.724 - - 0.964 - 0.760 - - - -
44. wdr82 ENSDARG00000014083 3159 1.721 - - 0.964 - - 0.757 - - - WD repeat domain 82 [Source:ZFIN;Acc:ZDB-GENE-030131-333]
45. ghitm 1443 1.719 0.990 - - - - - 0.729 - - growth hormone inducible transmembrane protein
46. numb ENSDARG00000027279 2905 1.718 0.931 - - - 0.787 - - - - numb homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-060422-1]
47. hnrnph1l ENSDARG00000005551 8727 1.712 0.965 - - 0.747 - - - - - heterogeneous nuclear ribonucleoprotein H1, like [Source:ZFIN;Acc:ZDB-GENE-030131-275]
48. fbxl14a ENSDARG00000034497, ENSDARG00000110327 3132 1.712 - - 0.943 - - - - 0.769 - F-box and leucine-rich repeat protein 14a [Source:ZFIN;Acc:ZDB-GENE-030131-5920]
49. sprb ENSDARG00000058553 1694 1.706 - - 0.938 - - 0.768 - - - sepiapterin reductase b [Source:ZFIN;Acc:ZDB-GENE-070719-1]
50. ppp4cb ENSDARG00000076439 1693 1.702 0.960 - - - 0.742 - - - - protein phosphatase 4, catalytic subunit b [Source:ZFIN;Acc:ZDB-GENE-080219-32]
51. hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 1.702 - - 0.880 - - - - - 0.822 high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
52. lmbr1 ENSDARG00000024092, ENSDARG00000116241 1418 1.7 - - 0.954 - - 0.746 - - - limb development membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-090128-4]
53. strn3 ENSDARG00000001729 4608 1.699 - - 0.934 - 0.765 - - - - striatin, calmodulin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-405]
54. kifc1 ENSDARG00000001558 6658 1.697 - - 0.883 - - - 0.814 - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
55. max ENSDARG00000024844 6035 1.696 - - 0.894 - 0.802 - - - - myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
56. usp8 ENSDARG00000063719 643 1.694 - - 0.958 - - - 0.736 - - ubiquitin specific peptidase 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1949]
57. adam10a ENSDARG00000053468 9308 1.692 - 0.755 0.937 - - - - - - ADAM metallopeptidase domain 10a [Source:ZFIN;Acc:ZDB-GENE-040917-2]
58. hmg20b ENSDARG00000042045, ENSDARG00000116536 2638 1.69 - - 0.954 - 0.736 - - - - high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]
59. TMEM185A TMEM185A 5505 1.69 - - 0.974 - - - 0.716 - -
60. dek ENSDARG00000070108 2262 1.688 - - 0.907 - 0.781 - - - - DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191]
61. CU633744.1 CU633744.1 2074 1.686 0.948 0.738 - - - - - - -
62. arid2 ENSDARG00000007413 4413 1.676 - - 0.914 - 0.762 - - - - AT rich interactive domain 2 (ARID, RFX-like) [Source:ZFIN;Acc:ZDB-GENE-030131-6311]
63. gdi1 ENSDARG00000056122 4106 1.674 - - 0.931 - 0.743 - - - - GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
64. mad2l1 ENSDARG00000004713 3398 1.674 - - 0.952 - - - - - 0.722 MAD2 mitotic arrest deficient-like 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-030515-3]
65. inip ENSDARG00000028523 1925 1.672 - - 0.966 - - - 0.706 - - ints3 and nabp interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-961]
66. kansl3 ENSDARG00000029556 2487 1.67 - - 0.962 - - - - - 0.708 KAT8 regulatory NSL complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050809-132]
67. pbrm1l ENSDARG00000077038, ENSDARG00000116839 1978 1.669 - - 0.966 - - - - 0.703 - polybromo 1, like [Source:ZFIN;Acc:ZDB-GENE-010501-3]
68. mcts1 ENSDARG00000025972 4662 1.667 - - 0.952 - - - 0.715 - - malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
69. trip12 ENSDARG00000061397, ENSDARG00000116161 7595 1.666 0.887 - - - - - 0.779 - - thyroid hormone receptor interactor 12 [Source:ZFIN;Acc:ZDB-GENE-041111-262]
70. lbr ENSDARG00000014013 4835 1.664 - - 0.913 - - - - - 0.751 lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
71. he2 945 1.664 0.953 0.711 - - - - - - - hatching enzyme 2
72. phgdh ENSDARG00000001873 8325 1.66 0.941 - - - - 0.719 - - - phosphoglycerate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030131-647]
73. ywhae2 ENSDARG00000017014 5105 1.655 - - 0.897 - - - 0.758 - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-050306-44]
74. ablim1b ENSDARG00000045064, ENSDARG00000111454, ENSDARG00000112629 2672 1.652 - - 0.947 - - - 0.705 - - actin binding LIM protein 1b [Source:ZFIN;Acc:ZDB-GENE-050327-91]
75. TMEM261 TMEM261 6529 1.649 - 0.703 0.946 - - - - - -
76. canx ENSDARG00000037488 4328 1.646 0.724 - 0.922 - - - - - - calnexin [Source:ZFIN;Acc:ZDB-GENE-040426-2797]
77. impdh1b ENSDARG00000029524 7472 1.636 - - 0.911 - - 0.725 - - - IMP (inosine 5'-monophosphate) dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030219-206]
78. psmb7 ENSDARG00000037962 11542 1.608 - - 0.885 - - - - - 0.723 proteasome subunit beta 7 [Source:ZFIN;Acc:ZDB-GENE-001208-4]
79. asb12a ENSDARG00000017086, ENSDARG00000110715 4230 1.602 - - 0.888 - - 0.714 - - - ankyrin repeat and SOCS box-containing 12a [Source:ZFIN;Acc:ZDB-GENE-030131-1647]
80. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.6 - - - - 0.859 - 0.741 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
81. eif3g ENSDARG00000016889 10367 1.596 - - 0.844 - - - 0.752 - - eukaryotic translation initiation factor 3, subunit G [Source:ZFIN;Acc:ZDB-GENE-040426-1076]
82. npm1b ENSDARG00000037675 5448 1.596 - - 0.857 - - - 0.739 - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
83. stt3b ENSDARG00000001890 1836 1.582 - 0.775 - - 0.807 - - - - STT3B, subunit of the oligosaccharyltransferase complex (catalytic) [Source:ZFIN;Acc:ZDB-GENE-030131-2638]
84. kdm5c ENSDARG00000006124 4389 1.58 - - - - 0.846 - 0.734 - - lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]
85. hspb9 ENSDARG00000078674 2755 1.58 0.732 - - - - 0.848 - - - heat shock protein, alpha-crystallin-related, 9 [Source:ZFIN;Acc:ZDB-GENE-080214-6]
86. sin3ab ENSDARG00000059812 2140 1.566 - - - - 0.839 - 0.727 - - SIN3 transcription regulator family member Ab [Source:ZFIN;Acc:ZDB-GENE-030131-2066]
87. casp3a ENSDARG00000017905, ENSDARG00000113754 2819 1.565 - - - - 0.754 - - 0.811 - caspase 3, apoptosis-related cysteine peptidase a [Source:ZFIN;Acc:ZDB-GENE-011210-1]
88. xrn2 ENSDARG00000101900 2875 1.56 - - - - - - 0.774 - 0.786 5'-3' exoribonuclease 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2874]
89. CABZ01084579.1 CABZ01084579.1 7181 1.557 - - 0.822 - - 0.735 - - -
90. sfxn1 ENSDARG00000019963 1689 1.557 - 0.758 - - 0.799 - - - - sideroflexin 1 [Source:ZFIN;Acc:ZDB-GENE-040801-45]
91. txndc9 ENSDARG00000069853, ENSDARG00000110688 1519 1.556 - - - - 0.829 - - - 0.727 thioredoxin domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-030131-8569]
92. marcksa ENSDARG00000004049 2518 1.555 - - - - - - 0.747 0.808 - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
93. camlg ENSDARG00000100409 2157 1.547 - - - - 0.840 - 0.707 - - calcium modulating ligand [Source:ZFIN;Acc:ZDB-GENE-040426-2407]
94. smarce1 ENSDARG00000016871 9628 1.546 - - 0.779 - - - 0.767 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
95. snrpd3l ENSDARG00000076283 7655 1.542 - - - 0.715 - - - - 0.827 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
96. wu:fq41a10 wu:fq41a10 7009 1.542 - - - - 0.835 - 0.707 - -
97. creb1a ENSDARG00000053586 5068 1.537 - - - - - - 0.764 - 0.773 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
98. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.534 - - 0.818 - - - - - 0.716 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
99. efhd2 ENSDARG00000055759 7777 1.532 - 0.731 - - 0.801 - - - - EF-hand domain family, member D2 [Source:ZFIN;Acc:ZDB-GENE-060531-152]
100. atf7b ENSDARG00000055481, ENSDARG00000114492, ENSDARG00000115171 2249 1.53 0.732 - - - 0.798 - - - - activating transcription factor 7b [Source:ZFIN;Acc:ZDB-GENE-030131-3028]

There are 1370 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA