Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lsm6

Gene Name Gene ID Reads Annotation
lsm6 ENSDARG00000036995 4377 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040625-50]










Genes with expression patterns similar to lsm6

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lsm6 ENSDARG00000036995 4377 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040625-50]
2. pcnp ENSDARG00000037713 2754 2.599 - 0.814 0.926 - - - - - 0.859 PEST proteolytic signal containing nuclear protein [Source:ZFIN;Acc:ZDB-GENE-041010-130]
3. psmb7 ENSDARG00000037962 11542 2.481 - 0.752 0.892 - - - 0.837 - - proteasome subunit beta 7 [Source:ZFIN;Acc:ZDB-GENE-001208-4]
4. rab5if ENSDARG00000074790 8807 2.481 - - 0.813 - - - 0.854 - 0.814 RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]
5. wu:fb17g07 wu:fb17g07 10567 2.447 0.758 - 0.928 - - - 0.761 - -
6. synpo2lb ENSDARG00000078696 2361 2.431 0.810 0.782 - - - - 0.839 - - synaptopodin 2-like b [Source:ZFIN;Acc:ZDB-GENE-090828-5]
7. sox6 ENSDARG00000015536 7728 2.419 0.706 - 0.795 - - - 0.918 - - SRY (sex determining region Y)-box 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6]
8. hspa4a ENSDARG00000004754 3439 2.407 0.734 - - - - - 0.829 - 0.844 heat shock protein 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2832]
9. gstm gstm 4064 2.396 0.779 - 0.785 - - - 0.832 - -
10. tufm ENSDARG00000104173 9292 2.386 - - 0.795 - - - 0.877 - 0.714 Tu translation elongation factor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050320-73]
11. smtnl1 ENSDARG00000041257 7410 2.352 0.788 - 0.773 - - - 0.791 - - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
12. dpysl5b ENSDARG00000059311 600 2.309 0.773 - - - - - 0.761 - 0.775 dihydropyrimidinase-like 5b [Source:ZFIN;Acc:ZDB-GENE-050720-4]
13. eif4e2 ENSDARG00000038585 2116 2.303 0.761 0.783 - - - - 0.759 - - eukaryotic translation initiation factor 4E family member 2 [Source:ZFIN;Acc:ZDB-GENE-050327-59]
14. ywhae2 ENSDARG00000017014 5105 2.282 - 0.731 0.832 - - - 0.719 - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-050306-44]
15. jam3b ENSDARG00000061794 5655 2.274 0.811 - - - - 0.761 0.702 - - junctional adhesion molecule 3b [Source:ZFIN;Acc:ZDB-GENE-030131-441]
16. eif3m ENSDARG00000013931 8117 2.264 0.730 - - - - - 0.759 - 0.775 eukaryotic translation initiation factor 3, subunit M [Source:ZFIN;Acc:ZDB-GENE-040426-2643]
17. cox7c ENSDARG00000104537 12169 2.256 0.729 - - - - - 0.764 - 0.763 cytochrome c oxidase subunit 7C [Source:ZFIN;Acc:ZDB-GENE-030131-8062]
18. hnrnpub ENSDARG00000004735 16496 2.228 - - - - - 0.728 0.768 0.732 - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
19. tpx2 ENSDARG00000078654 8120 2.145 - - 0.703 - - - 0.710 - 0.732 TPX2, microtubule-associated, homolog (Xenopus laevis) [Source:ZFIN;Acc:ZDB-GENE-030131-9652]
20. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.769 0.858 - - - - - 0.911 - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
21. pank1b ENSDARG00000010098 3202 1.759 - - 0.888 - - - - - 0.871 pantothenate kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070209-259]
22. cd99l2 ENSDARG00000056722 5036 1.757 - - 0.901 - - - 0.856 - - CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
23. ywhag2 ENSDARG00000071658, ENSDARG00000116741 3326 1.756 0.832 - - - - - 0.924 - - 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061023-2]
24. cap2 ENSDARG00000104478 3266 1.754 0.913 - - - - - 0.841 - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
25. smg5 ENSDARG00000041481 1286 1.747 - - 0.877 - - - 0.870 - - SMG5 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-050913-144]
26. eif3ja ENSDARG00000012603 6324 1.735 - - 0.850 - - - - - 0.885 eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
27. cdc20 ENSDARG00000100741 3264 1.72 - - - - - - - 0.842 0.878 cell division cycle 20 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2044]
28. mrpl22 ENSDARG00000109961 1374 1.717 0.836 - 0.881 - - - - - - mitochondrial ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-080303-28]
29. eno1a ENSDARG00000022456, ENSDARG00000116458 14401 1.715 0.881 - - - - - 0.834 - - enolase 1a, (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-6048]
30. ss18 ENSDARG00000002970 2618 1.713 - - 0.879 - - - - - 0.834 synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]
31. cct3 ENSDARG00000016173 15869 1.71 0.838 - - - - - 0.872 - - chaperonin containing TCP1, subunit 3 (gamma) [Source:ZFIN;Acc:ZDB-GENE-020419-5]
32. taf10 ENSDARG00000068641 3333 1.707 - - - - - - 0.830 - 0.877 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-060526-334]
33. PTPLA PTPLA 4044 1.707 0.863 - - - - - 0.844 - -
34. pebp1 ENSDARG00000042069 6651 1.706 0.849 - - - - - 0.857 - - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
35. camk2d2 ENSDARG00000014273 2840 1.701 0.858 - - - - - 0.843 - - calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 2 [Source:ZFIN;Acc:ZDB-GENE-040718-277]
36. cdkn1c cdkn1c 17427 1.701 0.845 - - - - - 0.856 - -
37. psma8 ENSDARG00000010965 8321 1.7 - 0.855 - - - - - - 0.845 proteasome subunit alpha 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2194]
38. gspt1l ENSDARG00000098627 8381 1.697 - 0.834 0.863 - - - - - - G1 to S phase transition 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-4009]
39. ddx19 ENSDARG00000005699 4602 1.696 - - - - - - 0.927 0.769 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
40. tmem47 ENSDARG00000057322 4691 1.692 0.777 - - - - - 0.915 - - transmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
41. minos1 ENSDARG00000101619 5273 1.691 - - 0.942 - - - 0.749 - - mitochondrial inner membrane organizing system 1 [Source:ZFIN;Acc:ZDB-GENE-060825-325]
42. enpp1 ENSDARG00000005789 3267 1.69 0.878 - - - - - 0.812 - - ectonucleotide pyrophosphatase/phosphodiesterase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-172]
43. setdb1a ENSDARG00000041243 1952 1.687 - 0.805 0.882 - - - - - - SET domain, bifurcated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2421]
44. anapc13 ENSDARG00000078435 996 1.686 - - 0.884 - - - 0.802 - - anaphase promoting complex subunit 13 [Source:ZFIN;Acc:ZDB-GENE-091204-298]
45. stac3 ENSDARG00000098883 1765 1.685 0.863 - - - - - 0.822 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
46. rgmd ENSDARG00000034013, ENSDARG00000111872 4752 1.679 0.806 - - - - - 0.873 - - RGM domain family, member D [Source:ZFIN;Acc:ZDB-GENE-030131-561]
47. sar1ab ENSDARG00000033320 3984 1.678 0.850 - - - - - 0.828 - - secretion associated, Ras related GTPase 1Ab [Source:ZFIN;Acc:ZDB-GENE-050417-437]
48. sprb ENSDARG00000058553 1694 1.675 - - 0.900 - - - 0.775 - - sepiapterin reductase b [Source:ZFIN;Acc:ZDB-GENE-070719-1]
49. trim55a ENSDARG00000029596 2858 1.675 0.845 - - - - - 0.830 - - tripartite motif containing 55a [Source:ZFIN;Acc:ZDB-GENE-040718-50]
50. txlnbb ENSDARG00000076241 6396 1.673 0.835 - - - - - 0.838 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
51. si:ch211-151o1.2 si:ch211-151o1.2 3580 1.673 0.838 - - - - - 0.835 - -
52. apex1 ENSDARG00000045843 6345 1.672 - - - - - - 0.867 0.805 - APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
53. tomm70a ENSDARG00000029639, ENSDARG00000112054 7715 1.672 - - 0.827 - - - - - 0.845 translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-8173]
54. tmsb ENSDARG00000054911 6411 1.669 0.814 - - - - - 0.855 - - thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
55. FHOD3_1 FHOD3_1 983 1.669 0.785 - - - - - 0.884 - -
56. GPRC5B GPRC5B 897 1.669 0.792 - - - - - 0.877 - -
57. si:ch211-156j16.1 ENSDARG00000092035 7441 1.669 0.839 - - - - - 0.830 - - si:ch211-156j16.1 [Source:ZFIN;Acc:ZDB-GENE-030131-4106]
58. myod1 ENSDARG00000030110 6019 1.668 0.787 - - - - - 0.881 - - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
59. prx ENSDARG00000017246 6183 1.667 0.823 - - - - - 0.844 - - periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
60. nexn ENSDARG00000057317 10972 1.662 0.831 - - - - - 0.831 - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
61. adss ENSDARG00000002071 5497 1.656 0.801 - - - - - 0.855 - - adenylosuccinate synthase [Source:ZFIN;Acc:ZDB-GENE-050417-337]
62. hmgcrb ENSDARG00000105206 2080 1.655 - - 0.889 - - - - - 0.766 3-hydroxy-3-methylglutaryl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-051108-1]
63. map3k7 ENSDARG00000020469 2845 1.655 - 0.792 - - - - - - 0.863 mitogen-activated protein kinase kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-041001-135]
64. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 1.654 0.730 - - - - - 0.924 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
65. rtn2a ENSDARG00000016088 12184 1.654 0.825 - - - - - 0.829 - - reticulon 2a [Source:ZFIN;Acc:ZDB-GENE-060420-1]
66. abcf1 ENSDARG00000031795 8635 1.654 0.751 - - - - - 0.903 - - ATP-binding cassette, sub-family F (GCN20), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-31]
67. tmem41ab ENSDARG00000026771, ENSDARG00000114061, ENSDARG00000116237 641 1.653 0.889 - - - - - 0.764 - - transmembrane protein 41ab [Source:ZFIN;Acc:ZDB-GENE-040426-2050]
68. nploc4 ENSDARG00000100487 1262 1.653 - - 0.883 - - - 0.770 - - NPL4 homolog, ubiquitin recognition factor [Source:ZFIN;Acc:ZDB-GENE-030131-5658]
69. murcb murcb 13655 1.652 0.787 - - - - - 0.865 - -
70. flncb ENSDARG00000018820 5595 1.646 0.762 - - - - - 0.884 - - filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
71. slc20a2 ENSDARG00000060796, ENSDARG00000113613 5420 1.646 - - 0.825 - - - 0.821 - - solute carrier family 20 (phosphate transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-060929-828]
72. chrna1 ENSDARG00000009021 2931 1.643 0.791 - - - - - 0.852 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
73. BX324201.1 BX324201.1 3302 1.641 0.822 - - - - - 0.819 - -
74. cbfa2t2 ENSDARG00000074337 4323 1.64 - - 0.883 - - - - - 0.757 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 [Source:ZFIN;Acc:ZDB-GENE-070209-1]
75. immt ENSDARG00000102874 3435 1.639 - 0.786 - - - - 0.853 - - inner membrane protein, mitochondrial (mitofilin) [Source:ZFIN;Acc:ZDB-GENE-030131-5417]
76. ALDH1L2 ENSDARG00000070230 2550 1.636 0.785 - - - - - 0.851 - - aldehyde dehydrogenase 1 family, member L2 [Source:ZFIN;Acc:ZDB-GENE-100426-6]
77. znf106a ENSDARG00000016651 6049 1.636 0.792 - - - - - 0.844 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
78. BX294434.1 ENSDARG00000061272 6493 1.635 0.835 - - - - - 0.800 - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
79. TMPO TMPO 3264 1.63 0.774 - - - - - 0.856 - -
80. aurkaip1 ENSDARG00000074985 2214 1.63 - 0.876 - - - - 0.754 - - aurora kinase A interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-070928-24]
81. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 1.629 0.782 - - - - - 0.847 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
82. zgc:92518 ENSDARG00000016343 3837 1.627 0.766 - - - - - 0.861 - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
83. NRAP ENSDARG00000009341 3565 1.624 0.760 - - - - - 0.864 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
84. klhl41b ENSDARG00000006757 10762 1.623 0.797 - - - - - 0.826 - - kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
85. faua ENSDARG00000099022 82901 1.622 0.798 - - - - - 0.824 - - Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
86. siah1 ENSDARG00000030871 1590 1.62 - - - - - - 0.752 - 0.868 siah E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-010319-31]
87. arvcfb ENSDARG00000061688 2388 1.619 0.730 - - - - - 0.889 - - ARVCF, delta catenin family member b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
88. cacna2d1a ENSDARG00000014804 1924 1.614 0.781 - - - - - 0.833 - - calcium channel, voltage-dependent, alpha 2/delta subunit 1a [Source:ZFIN;Acc:ZDB-GENE-041210-215]
89. hn1b hn1b 7325 1.613 0.720 - - - - 0.893 - - -
90. mcts1 ENSDARG00000025972 4662 1.613 - - 0.859 - - - 0.754 - - malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
91. eaf2 ENSDARG00000010432 3768 1.613 - - - - - - 0.794 0.819 - ELL associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-040625-179]
92. rnf2 ENSDARG00000010381 3427 1.611 - - 0.868 - - - 0.743 - - ring finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5243]
93. ZBTB16 ZBTB16 3385 1.61 - 0.759 0.851 - - - - - -
94. tm2d3 ENSDARG00000076618 2310 1.609 - - 0.891 - - - 0.718 - - TM2 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070620-20]
95. ITGB1BP2 ENSDARG00000030176 2472 1.607 0.784 - - - - - 0.823 - - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
96. rpl7 ENSDARG00000007320 81359 1.606 0.789 - - - - - 0.817 - - ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
97. ank2b ENSDARG00000043313 3065 1.606 0.719 - - - - - 0.887 - - ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
98. tgm2a ENSDARG00000070157 4516 1.605 0.822 - - - - - 0.783 - - transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
99. uck2b ENSDARG00000022213 1542 1.605 - 0.788 - - - - - - 0.817 uridine-cytidine kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5265]
100. tma7 ENSDARG00000071670 13372 1.604 0.795 - - - - - - 0.809 - translation machinery associated 7 homolog [Source:ZFIN;Acc:ZDB-GENE-061027-176]

There are 1826 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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