Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lsm4

Gene Name Gene ID Reads Annotation
lsm4 ENSDARG00000023852 6083 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040426-1652]










Genes with expression patterns similar to lsm4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lsm4 ENSDARG00000023852 6083 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040426-1652]
2. srsf11 ENSDARG00000098574 12801 2.564 0.941 0.875 0.748 - - - - - - serine/arginine-rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605]
3. mbd3a ENSDARG00000061774 4047 2.463 - - - - - 0.778 0.964 - 0.721 methyl-CpG binding domain protein 3a [Source:ZFIN;Acc:ZDB-GENE-030131-9077]
4. lmnb2 ENSDARG00000101624 11304 2.409 0.826 - - - - 0.819 - - 0.764 lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]
5. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 27740 2.404 - - - - 0.710 - 0.933 - 0.761 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
6. lsm7 ENSDARG00000058328 7191 2.373 - 0.860 - - - 0.716 - - 0.797 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-030131-8284]
7. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 2.266 - 0.842 - - - - - 0.715 0.709 serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
8. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.878 - - - - 0.927 - 0.951 - - RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
9. rbm4.2 ENSDARG00000055080 5241 1.867 0.898 - - - - - 0.969 - - RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3019]
10. tars ENSDARG00000013250, ENSDARG00000110996, ENSDARG00000113759 4599 1.865 0.924 0.941 - - - - - - - threonyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-041010-218]
11. zgmrpl4 zgmrpl4 1754 1.856 - 0.900 - - - - 0.956 - -
12. ttc27 ENSDARG00000007918 1228 1.842 0.923 - - - 0.919 - - - - tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
13. ppa1b ENSDARG00000030441 9027 1.842 - 0.946 - - 0.896 - - - - pyrophosphatase (inorganic) 1b [Source:ZFIN;Acc:ZDB-GENE-050417-375]
14. zgc:77086 ENSDARG00000014015 4908 1.841 - - 0.887 - - - 0.954 - - zgc:77086 [Source:ZFIN;Acc:ZDB-GENE-040426-2238]
15. tomm7 ENSDARG00000067717 4452 1.838 - - - - 0.892 - 0.946 - - translocase of outer mitochondrial membrane 7 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-060825-115]
16. csnk1db ENSDARG00000006125 2581 1.832 - 0.888 - - - - 0.944 - - casein kinase 1, delta b [Source:ZFIN;Acc:ZDB-GENE-040426-2385]
17. spata13 ENSDARG00000062837 5330 1.83 0.910 - - - 0.920 - - - - spermatogenesis associated 13 [Source:ZFIN;Acc:ZDB-GENE-091116-25]
18. mrpl19 ENSDARG00000011885 2208 1.828 0.945 0.883 - - - - - - - mitochondrial ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040801-55]
19. cplx4b ENSDARG00000059486 3192 1.827 0.873 - - - - - 0.954 - - complexin 4b [Source:ZFIN;Acc:ZDB-GENE-070705-157]
20. CDCA4 ENSDARG00000042319 7918 1.827 - 0.858 - - - - 0.969 - - cell division cycle associated 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1695]
21. vgll4b ENSDARG00000103730 5266 1.825 - 0.898 - - 0.927 - - - - vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
22. rhoaa ENSDARG00000026845 6900 1.822 - 0.879 - - - - 0.943 - - ras homolog gene family, member Aa [Source:ZFIN;Acc:ZDB-GENE-040426-2150]
23. nf2b ENSDARG00000025567 1441 1.819 - 0.876 - - - - 0.943 - - neurofibromin 2b (merlin) [Source:ZFIN;Acc:ZDB-GENE-040622-3]
24. gpx4b ENSDARG00000076836 8085 1.805 0.907 0.898 - - - - - - - glutathione peroxidase 4b [Source:ZFIN;Acc:ZDB-GENE-030410-3]
25. epn2 ENSDARG00000008377 5458 1.804 0.933 - 0.871 - - - - - - epsin 2 [Source:ZFIN;Acc:ZDB-GENE-071212-1]
26. cab39 ENSDARG00000043451 1326 1.804 0.933 0.871 - - - - - - - calcium binding protein 39 [Source:ZFIN;Acc:ZDB-GENE-040625-158]
27. RNF144B ENSDARG00000024940 1559 1.8 - 0.847 - - - - 0.953 - - ring finger protein 144B [Source:ZFIN;Acc:ZDB-GENE-040426-1292]
28. Sep-02 Sep-02 10074 1.794 - 0.907 - - 0.887 - - - -
29. nup62l ENSDARG00000020527, ENSDARG00000111836, ENSDARG00000112620 3763 1.793 - 0.861 - - 0.932 - - - - nucleoporin 62 like [Source:ZFIN;Acc:ZDB-GENE-030131-8491]
30. GIT1 ENSDARG00000039489 1157 1.79 0.918 - 0.872 - - - - - - G protein-coupled receptor kinase interacting ArfGAP 1 [Source:ZFIN;Acc:ZDB-GENE-100408-5]
31. itsn1 ENSDARG00000000086 684 1.789 0.919 - 0.870 - - - - - - intersectin 1 (SH3 domain protein) [Source:ZFIN;Acc:ZDB-GENE-030616-226]
32. kif11 ENSDARG00000010948 4973 1.785 - - - - - - 0.981 - 0.804 kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
33. arid4a ENSDARG00000043873 4176 1.782 - 0.905 0.877 - - - - - - AT rich interactive domain 4A (RBP1-like) [Source:ZFIN;Acc:ZDB-GENE-050809-105]
34. stk38a ENSDARG00000019973 1343 1.782 0.924 - 0.858 - - - - - - serine/threonine kinase 38a [Source:ZFIN;Acc:ZDB-GENE-040426-2811]
35. emd ENSDARG00000095774, ENSDARG00000114017 1640 1.781 - 0.876 - - 0.905 - - - - emerin (Emery-Dreifuss muscular dystrophy) [Source:ZFIN;Acc:ZDB-GENE-070501-2]
36. glud1a ENSDARG00000008816, ENSDARG00000114252 3468 1.778 0.886 - - - - - 0.892 - - glutamate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-030114-2]
37. si:ch211-214j24.14 ENSDARG00000096037 536 1.774 - 0.845 - - - - 0.929 - - si:ch211-214j24.14 [Source:ZFIN;Acc:ZDB-GENE-110914-226]
38. prickle1b ENSDARG00000045694 7536 1.773 - 0.871 - - - - 0.902 - - prickle homolog 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2152]
39. C3H16orf89 C3H16orf89 449 1.773 - 0.848 - - 0.925 - - - -
40. si:dkey-228b2.5 1760 1.764 0.857 - - - 0.907 - - - - si:dkey-228b2.5
41. clint1a ENSDARG00000025535 4965 1.764 0.873 - 0.891 - - - - - - clathrin interactor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2590]
42. srp54 ENSDARG00000098367 2301 1.759 - 0.884 0.875 - - - - - - signal recognition particle 54 [Source:ZFIN;Acc:ZDB-GENE-040426-818]
43. pfdn1 ENSDARG00000014536 6969 1.758 - - 0.855 - - - 0.903 - - prefoldin subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050306-50]
44. slc35c2 ENSDARG00000037517, ENSDARG00000114428 3644 1.757 - 0.861 - - 0.896 - - - - solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
45. prpf8 ENSDARG00000026180 7026 1.757 - - - - - 0.800 0.957 - - pre-mRNA processing factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-577]
46. smyd1b ENSDARG00000091253 4964 1.755 - - - - 0.847 - 0.908 - - SET and MYND domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-060522-1]
47. skia ENSDARG00000042151 1850 1.754 0.883 0.871 - - - - - - - v-ski avian sarcoma viral oncogene homolog a [Source:ZFIN;Acc:ZDB-GENE-990715-9]
48. anapc10 ENSDARG00000090152 1406 1.74 - 0.872 0.868 - - - - - - anaphase promoting complex subunit 10 [Source:ZFIN;Acc:ZDB-GENE-060224-2]
49. ck2a1 ck2a1 3749 1.734 0.943 - - - - - - - 0.791
50. ipo7 ENSDARG00000035751 7095 1.73 0.934 - - - 0.796 - - - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
51. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.728 0.927 - - - - - - - 0.801 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
52. denr ENSDARG00000037229 8370 1.727 - - 0.823 - 0.904 - - - - density-regulated protein [Source:ZFIN;Acc:ZDB-GENE-040718-450]
53. MAP4_1 MAP4_1 1153 1.725 - 0.866 0.859 - - - - - -
54. snrpd3 ENSDARG00000013800, ENSDARG00000112203 3334 1.721 - - - - - - 0.961 0.760 - small nuclear ribonucleoprotein D3 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040625-55]
55. eif1b ENSDARG00000012688 34711 1.72 0.898 0.822 - - - - - - - eukaryotic translation initiation factor 1B [Source:ZFIN;Acc:ZDB-GENE-030131-956]
56. cstf3 ENSDARG00000018904 6111 1.719 - - - - - 0.743 0.976 - - cleavage stimulation factor, 3' pre-RNA, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1997]
57. CABZ01059390.1 CABZ01059390.1 4340 1.717 - - - - 0.872 - 0.845 - -
58. hdgfrp2 7462 1.715 - - - - - 0.742 0.973 - - hepatoma-derived growth factor-related protein 2, transcript variant X1
59. psmb2 ENSDARG00000031511 4016 1.713 - - 0.784 - 0.929 - - - - proteasome subunit beta 2 [Source:ZFIN;Acc:ZDB-GENE-040718-353]
60. AP2A1 ENSDARG00000054320 5591 1.712 - - 0.803 - 0.909 - - - - adaptor related protein complex 2 subunit alpha 1 [Source:ZFIN;Acc:ZDB-GENE-090302-2]
61. arid1aa ENSDARG00000101710 3644 1.705 - - - - - - 0.977 - 0.728 AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
62. tmem258 ENSDARG00000078785 9578 1.702 0.818 - 0.884 - - - - - - transmembrane protein 258 [Source:ZFIN;Acc:ZDB-GENE-040426-1739]
63. snrpa ENSDARG00000018890 4593 1.701 - - - - 0.964 - - - 0.737 small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]
64. kansl2 ENSDARG00000056318, ENSDARG00000113311 4702 1.701 0.929 - - - - - - - 0.772 KAT8 regulatory NSL complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-041010-67]
65. cyb5r3 ENSDARG00000005891 4440 1.696 0.802 - - - - - 0.894 - - cytochrome b5 reductase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3281]
66. strap ENSDARG00000007405 6426 1.696 - - - - - - 0.969 - 0.727 serine/threonine kinase receptor associated protein [Source:ZFIN;Acc:ZDB-GENE-040426-1110]
67. ktn1 ENSDARG00000032802 6251 1.694 - 0.853 0.841 - - - - - - kinectin 1 [Source:ZFIN;Acc:ZDB-GENE-030408-4]
68. arpc1a ENSDARG00000008383 7353 1.693 0.787 - - - 0.906 - - - - actin related protein 2/3 complex, subunit 1A [Source:ZFIN;Acc:ZDB-GENE-040116-1]
69. hnrpl 6412 1.691 0.950 - - - - - - - 0.741 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
70. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.688 0.941 - - - - - - - 0.747 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
71. cdc42bpb ENSDARG00000019383 5976 1.684 - 0.844 - - - - 0.840 - - CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
72. snrpc ENSDARG00000009871 9567 1.682 - - - - 0.925 - - - 0.757 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
73. akirin1 ENSDARG00000039969, ENSDARG00000116670 2533 1.675 - - - - 0.928 - - - 0.747 akirin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2178]
74. MARK3 MARK3 1767 1.673 - - - - 0.929 0.744 - - -
75. blcap ENSDARG00000052073 8646 1.673 - 0.918 - - - 0.755 - - - bladder cancer associated protein [Source:ZFIN;Acc:ZDB-GENE-000330-7]
76. arpc4l ENSDARG00000058225 10107 1.673 0.804 - 0.869 - - - - - - actin related protein 2/3 complex, subunit 4, like [Source:ZFIN;Acc:ZDB-GENE-040808-18]
77. skp1 ENSDARG00000003151 8172 1.672 - - - - - - 0.968 - 0.704 S-phase kinase-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1707]
78. slc48a1b ENSDARG00000026109 1427 1.67 0.753 - - - 0.917 - - - - solute carrier family 48 (heme transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8226]
79. col16a1 ENSDARG00000009194 5600 1.669 - - - - 0.917 - 0.752 - - collagen, type XVI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-060503-351]
80. wsb1 ENSDARG00000021343 3828 1.668 - - - - 0.957 - - 0.711 - WD repeat and SOCS box containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1946]
81. med14 ENSDARG00000009953 1383 1.666 - - - - - - 0.958 - 0.708 mediator complex subunit 14 [Source:ZFIN;Acc:ZDB-GENE-030131-8867]
82. stag1b ENSDARG00000062137 1814 1.666 - - - - - - 0.955 - 0.711 stromal antigen 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1393]
83. mcm2 ENSDARG00000102798 8148 1.666 0.964 - - - - - - - 0.702 minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
84. nrp1a ENSDARG00000102153 4154 1.665 - 0.899 - - 0.766 - - - - neuropilin 1a [Source:ZFIN;Acc:ZDB-GENE-030519-2]
85. cnbpa ENSDARG00000045776 8648 1.664 - - - - 0.745 - 0.919 - - CCHC-type zinc finger, nucleic acid binding protein a [Source:ZFIN;Acc:ZDB-GENE-030131-5045]
86. snrpe ENSDARG00000033175 7462 1.664 - - - - 0.943 0.721 - - - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
87. wdr43 ENSDARG00000077264 1992 1.663 - - - - 0.933 0.730 - - - WD repeat domain 43 [Source:ZFIN;Acc:ZDB-GENE-021231-3]
88. pcyt2 ENSDARG00000043003 3506 1.663 - - - - - 0.707 0.956 - - phosphate cytidylyltransferase 2, ethanolamine [Source:ZFIN;Acc:ZDB-GENE-041010-132]
89. wu:fk48d07 wu:fk48d07 13245 1.66 - - - - - - 0.896 - 0.764
90. pfdn4 ENSDARG00000061228 8266 1.659 0.924 - - - 0.735 - - - - prefoldin subunit 4 [Source:ZFIN;Acc:ZDB-GENE-100922-122]
91. histh1l ENSDARG00000035519 12293 1.654 - - - - - 0.758 0.896 - - histone H1 like [Source:ZFIN;Acc:ZDB-GENE-050417-145]
92. ranbp1 ENSDARG00000014817 3371 1.649 - 0.906 - - - - - - 0.743 RAN binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2548]
93. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.646 - 0.893 - - - - - - 0.753 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
94. sox9b ENSDARG00000043923 5375 1.639 - - - - 0.931 - - - 0.708 SRY (sex determining region Y)-box 9b [Source:ZFIN;Acc:ZDB-GENE-001103-2]
95. srcap ENSDARG00000005236 1740 1.636 - - - - 0.932 - - - 0.704 Snf2-related CREBBP activator protein [Source:ZFIN;Acc:ZDB-GENE-041008-127]
96. seh1l ENSDARG00000004280 2915 1.635 - 0.889 - - - - - - 0.746 SEH1-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-6689]
97. sepw2a 8597 1.631 - - - - - 0.708 0.923 - - selenoprotein W, 2a
98. ndufaf2 ENSDARG00000069286, ENSDARG00000114828 1563 1.63 - - 0.885 - - - - 0.745 - NADH:ubiquinone oxidoreductase complex assembly factor 2 [Source:ZFIN;Acc:ZDB-GENE-040808-28]
99. emc1 ENSDARG00000057255 3582 1.628 - - - - 0.917 0.711 - - - ER membrane protein complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-060810-98]
100. mad2l1 ENSDARG00000004713 3398 1.627 - - - - - 0.771 - - 0.856 MAD2 mitotic arrest deficient-like 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-030515-3]

There are 1418 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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