Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lsm12b

Gene Name Gene ID Reads Annotation
lsm12b ENSDARG00000109510 14459 LSM12 homolog b [Source:ZFIN;Acc:ZDB-GENE-040426-2164]










Genes with expression patterns similar to lsm12b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lsm12b ENSDARG00000109510 14459 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LSM12 homolog b [Source:ZFIN;Acc:ZDB-GENE-040426-2164]
2. tob1b ENSDARG00000021372 7048 2.672 - 0.756 - - - 0.932 0.984 - - transducer of ERBB2, 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2151]
3. elmo1 ENSDARG00000098753 6966 2.564 - 0.743 - - - - 0.984 - 0.837 engulfment and cell motility 1 (ced-12 homolog, C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-2069]
4. tia1l ENSDARG00000026476, ENSDARG00000109827 9378 2.473 - 0.913 0.718 - - 0.842 - - - cytotoxic granule-associated RNA binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2167]
5. zranb2 ENSDARG00000044332 6723 2.472 - 0.776 0.710 - - - 0.986 - - zinc finger, RAN-binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2743]
6. si:ch73-110p20.1 5932 2.447 - - 0.713 - - - 0.983 0.751 - si:ch73-110p20.1
7. ctsf ENSDARG00000063095 4564 2.434 - 0.825 0.770 - - 0.839 - - - cathepsin F [Source:ZFIN;Acc:ZDB-GENE-030131-9831]
8. ctnnb1 ENSDARG00000014571 12004 2.43 0.701 0.744 - - - - 0.985 - - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
9. abi1a ENSDARG00000010155 5631 2.331 - - - - 0.706 0.909 - - 0.716 abl-interactor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1701]
10. phb ENSDARG00000057414 9551 2.325 - - 0.731 - - 0.816 - 0.778 - prohibitin [Source:ZFIN;Acc:ZDB-GENE-030131-6577]
11. rhebl1 ENSDARG00000039162 3966 2.296 0.719 0.744 - - - 0.833 - - - Ras homolog, mTORC1 binding like 1 [Source:ZFIN;Acc:ZDB-GENE-000510-1]
12. CABZ01081490.1 ENSDARG00000111653 11892 2.24 0.720 - - - 0.789 - - - 0.731
13. cct5 ENSDARG00000045399 11572 1.79 - - 0.803 - - - 0.987 - - chaperonin containing TCP1, subunit 5 (epsilon) [Source:ZFIN;Acc:ZDB-GENE-030131-977]
14. edf1 ENSDARG00000009950 10518 1.784 - 0.793 - - - - 0.991 - - endothelial differentiation-related factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1710]
15. eif1axb ENSDARG00000057912, ENSDARG00000111310 26395 1.767 - - - - - 0.853 0.914 - - eukaryotic translation initiation factor 1A X-linked b [Source:ZFIN;Acc:ZDB-GENE-030131-1319]
16. h1fx ENSDARG00000054058 4075 1.764 - - - - - - 0.983 0.781 - H1 histone family, member X [Source:ZFIN;Acc:ZDB-GENE-030131-1228]
17. ctdsp1 ENSDARG00000040674 2828 1.761 - 0.779 - - - - 0.982 - - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-050522-523]
18. fbl ENSDARG00000053912 5891 1.746 - - 0.764 - - - 0.982 - - fibrillarin [Source:ZFIN;Acc:ZDB-GENE-040426-1936]
19. si:dkey-13i19.8 ENSDARG00000093058 4617 1.744 - 0.787 - - - - 0.957 - - si:dkey-13i19.8 [Source:ZFIN;Acc:ZDB-GENE-041210-156]
20. slit3 ENSDARG00000034268, ENSDARG00000111488, ENSDARG00000115194 3999 1.741 - 0.758 - - - - 0.983 - - slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
21. azin1b ENSDARG00000035869, ENSDARG00000115647 9761 1.739 - 0.770 - - - - 0.969 - - antizyme inhibitor 1b [Source:ZFIN;Acc:ZDB-GENE-030121-1]
22. ppa1b ENSDARG00000030441 9027 1.731 - - - - - - 0.984 - 0.747 pyrophosphatase (inorganic) 1b [Source:ZFIN;Acc:ZDB-GENE-050417-375]
23. arrdc3a ENSDARG00000052690 2280 1.73 - 0.749 - - - - 0.981 - - arrestin domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2913]
24. mapk6 ENSDARG00000032103 6422 1.722 - 0.739 - - - - 0.983 - - mitogen-activated protein kinase 6 [Source:ZFIN;Acc:ZDB-GENE-050420-7]
25. gabarapa ENSDARG00000035557, ENSDARG00000110690 6723 1.717 - 0.735 - - - - 0.982 - - GABA(A) receptor-associated protein a [Source:ZFIN;Acc:ZDB-GENE-030131-5174]
26. hnrnpm ENSDARG00000061735 19428 1.702 - 0.743 - - - - 0.959 - - heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
27. fundc2 ENSDARG00000103740 3856 1.696 - 0.710 - - - - 0.986 - - fun14 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-041010-26]
28. pa2g4a ENSDARG00000039578, ENSDARG00000115881 16166 1.689 - - 0.871 - - - - - 0.818 proliferation-associated 2G4, a [Source:ZFIN;Acc:ZDB-GENE-030616-161]
29. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 1.685 0.701 - - - - - 0.984 - - heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
30. cav1 ENSDARG00000103747 15519 1.678 - - - - - 0.866 - 0.812 - caveolin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2415]
31. cyb5a ENSDARG00000098589 9430 1.669 - 0.759 - - - 0.910 - - - cytochrome b5 type A (microsomal) [Source:ZFIN;Acc:ZDB-GENE-040426-2148]
32. ndufa11 ENSDARG00000042777 2757 1.669 - 0.845 - - - 0.824 - - - NADH:ubiquinone oxidoreductase subunit A11 [Source:ZFIN;Acc:ZDB-GENE-040426-1631]
33. cdc42 ENSDARG00000044573 11795 1.666 - - 0.793 - - 0.873 - - - cell division cycle 42 [Source:ZFIN;Acc:ZDB-GENE-030131-8783]
34. copb1 ENSDARG00000056557, ENSDARG00000116045 7395 1.655 - 0.782 - - - 0.873 - - - coatomer protein complex, subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030219-38]
35. amotl2a ENSDARG00000061923 4713 1.65 - 0.811 - - - 0.839 - - - angiomotin like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-9770]
36. snx12 ENSDARG00000019060 9563 1.641 - - 0.802 - - 0.839 - - - sorting nexin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-787]
37. MRPS12_1 MRPS12_1 2714 1.636 - 0.817 - - - - - 0.819 -
38. ubl3a ENSDARG00000099532, ENSDARG00000113955 3475 1.627 - 0.806 - - - - - 0.821 - ubiquitin-like 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3431]
39. znf865 ENSDARG00000036698 15532 1.627 - 0.820 - - 0.807 - - - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
40. pfdn5 ENSDARG00000035043, ENSDARG00000109218, ENSDARG00000110370, ENSDARG00000113603 7566 1.623 - 0.770 - - - - - 0.853 - prefoldin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6858]
41. SERBP1 SERBP1 9276 1.62 - 0.842 0.778 - - - - - -
42. lipin2 2021 1.618 - 0.804 - - - - - 0.814 - lipin 2, transcript variant X2
43. amd1 ENSDARG00000043856, ENSDARG00000111778 9667 1.617 - - 0.780 - - 0.837 - - - adenosylmethionine decarboxylase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-760]
44. uggt1 ENSDARG00000054746 2060 1.616 - 0.786 - - - 0.830 - - - UDP-glucose glycoprotein glucosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-061103-619]
45. ube2v1 ENSDARG00000041875 5739 1.615 - - - - 0.772 0.843 - - - ubiquitin-conjugating enzyme E2 variant 1 [Source:ZFIN;Acc:ZDB-GENE-051030-102]
46. mcts1 ENSDARG00000025972 4662 1.612 - - - - - 0.826 - 0.786 - malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
47. commd4 ENSDARG00000061946 3281 1.604 - 0.785 - - - - - 0.819 - COMM domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-600]
48. psmb1 ENSDARG00000009640 8628 1.6 - - 0.799 - - - - 0.801 - proteasome subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-040618-2]
49. anp32e ENSDARG00000054804 11017 1.596 - - 0.853 - - - - 0.743 - acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:ZFIN;Acc:ZDB-GENE-040426-2448]
50. eif4h ENSDARG00000042252 6742 1.595 - 0.765 0.830 - - - - - - eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
51. ctnna1 ENSDARG00000102441 7984 1.591 - 0.781 0.810 - - - - - - catenin (cadherin-associated protein), alpha 1 [Source:ZFIN;Acc:ZDB-GENE-991207-24]
52. parvaa ENSDARG00000043710 3495 1.591 - 0.762 - - - 0.829 - - - parvin, alpha a [Source:ZFIN;Acc:ZDB-GENE-040721-2]
53. tceb2 10382 1.59 0.722 - - - - 0.868 - - - transcription elongation factor B (SIII), polypeptide 2
54. lypla2 ENSDARG00000053656 8971 1.581 - 0.802 0.779 - - - - - - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
55. atp5h 18018 1.576 - 0.779 - - - - - 0.797 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, transcript variant X1
56. fam89a ENSDARG00000079979 4375 1.565 - 0.793 - - - - - 0.772 - family with sequence similarity 89, member A [Source:ZFIN;Acc:ZDB-GENE-111019-1]
57. farp2 ENSDARG00000016429 3133 1.564 - 0.737 - - - - - 0.827 - FERM, RhoGEF and pleckstrin domain protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2993]
58. fkbp14 ENSDARG00000040695 7725 1.562 - 0.743 - - - 0.819 - - - FK506 binding protein 14 [Source:ZFIN;Acc:ZDB-GENE-040801-210]
59. txn2 ENSDARG00000034777 4071 1.562 - 0.736 - - - 0.826 - - - thioredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1795]
60. SNRPG ENSDARG00000099667 18697 1.56 - 0.813 - - - - - 0.747 - small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
61. pum1 ENSDARG00000099256 5017 1.559 - 0.808 0.751 - - - - - - pumilio RNA-binding family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2074]
62. camk2g1 ENSDARG00000071395 10456 1.556 - - - - - 0.836 - - 0.720 calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1 [Source:ZFIN;Acc:ZDB-GENE-050913-146]
63. eif3m ENSDARG00000013931 8117 1.554 - 0.746 - - 0.808 - - - - eukaryotic translation initiation factor 3, subunit M [Source:ZFIN;Acc:ZDB-GENE-040426-2643]
64. plcd1b ENSDARG00000034080 4074 1.553 - - - - - 0.828 - 0.725 - phospholipase C, delta 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9435]
65. si:ch211-161h7.4 ENSDARG00000087238 4399 1.553 - 0.830 0.723 - - - - - - si:ch211-161h7.4 [Source:ZFIN;Acc:ZDB-GENE-091118-108]
66. mdh1a mdh1a 11035 1.548 - - 0.786 - 0.762 - - - -
67. ARF5 ENSDARG00000070472, ENSDARG00000115687 6101 1.547 - 0.735 - - - - - 0.812 - ADP-ribosylation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030910-5]
68. mrpl41 ENSDARG00000002264 1756 1.543 - 0.719 - - - 0.824 - - - mitochondrial ribosomal protein L41 [Source:ZFIN;Acc:ZDB-GENE-050522-200]
69. ppp2r2d ENSDARG00000102009 5710 1.539 - - 0.807 - - - - - 0.732 protein phosphatase 2, regulatory subunit B, delta [Source:ZFIN;Acc:ZDB-GENE-040426-2086]
70. crtap ENSDARG00000018010 7722 1.535 - 0.821 - - - - - 0.714 - cartilage associated protein [Source:ZFIN;Acc:ZDB-GENE-040426-2619]
71. gigfy2 3194 1.531 - 0.785 0.746 - - - - - - GRB10 interacting GYF protein 2, transcript variant X1
72. ylpm1 ENSDARG00000043680 7676 1.531 - - - - 0.774 - - 0.757 - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
73. wu:fc51f04 wu:fc51f04 7074 1.53 - - - - 0.708 0.822 - - -
74. kdm1a ENSDARG00000060679 6152 1.529 - 0.752 - - 0.777 - - - - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
75. arglu1a ENSDARG00000019223 8716 1.527 - 0.804 - - - - - 0.723 - arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
76. ndufab1b ENSDARG00000014915 12796 1.517 - 0.797 - - - - - - 0.720 NADH:ubiquinone oxidoreductase subunit AB1b [Source:ZFIN;Acc:ZDB-GENE-030131-4437]
77. sdc4 ENSDARG00000059906 10105 1.516 - 0.727 0.789 - - - - - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
78. dcbld2 ENSDARG00000062177, ENSDARG00000112201 3795 1.513 - 0.709 - - - - - 0.804 - discoidin, CUB and LCCL domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1822]
79. etf1 etf1 12861 1.508 0.732 - 0.776 - - - - - -
80. arl1 ENSDARG00000101680 5973 1.507 - 0.785 - - - - - 0.722 - ADP-ribosylation factor-like 1 [Source:ZFIN;Acc:ZDB-GENE-040718-175]
81. mmp2 ENSDARG00000017676 2347 1.492 - 0.713 - - - - - 0.779 - matrix metallopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9123]
82. psmd14 ENSDARG00000063100 15711 1.49 0.712 - - - - - - - 0.778 proteasome 26S subunit, non-ATPase 14 [Source:ZFIN;Acc:ZDB-GENE-070410-56]
83. dnajc5ab ENSDARG00000004836 2923 1.486 - 0.770 0.716 - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 5ab [Source:ZFIN;Acc:ZDB-GENE-081021-2]
84. acadvl ENSDARG00000016687 5329 1.485 - - 0.777 - 0.708 - - - - acyl-CoA dehydrogenase very long chain [Source:ZFIN;Acc:ZDB-GENE-030131-899]
85. igf2bp1 ENSDARG00000061478 22924 1.482 - - - 0.701 - - - - 0.781 insulin-like growth factor 2 mRNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1258]
86. arhgdig ENSDARG00000004034 10368 1.481 - 0.721 - - - - - 0.760 - Rho GDP dissociation inhibitor (GDI) gamma [Source:ZFIN;Acc:ZDB-GENE-040426-1493]
87. col16a1 ENSDARG00000009194 5600 1.48 - 0.777 - - - - - - 0.703 collagen, type XVI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-060503-351]
88. ptpn1 ENSDARG00000007923 3647 1.478 - 0.776 0.702 - - - - - - protein tyrosine phosphatase, non-receptor type 1 [Source:ZFIN;Acc:ZDB-GENE-980605-23]
89. inppl1a ENSDARG00000104222 6256 1.478 - 0.732 0.746 - - - - - - inositol polyphosphate phosphatase-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3904]
90. fen1 ENSDARG00000011404 3358 1.474 - 0.714 - - 0.760 - - - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
91. hexim1 ENSDARG00000036482 4317 1.47 - - 0.752 - 0.718 - - - - hexamethylene bis-acetamide inducible 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4637]
92. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 46072 1.47 - 0.721 - - - 0.749 - - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
93. pdcd4a ENSDARG00000021702 7293 1.469 - 0.739 - - - - - 0.730 - programmed cell death 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1920]
94. capns1a ENSDARG00000035329 10870 1.462 - - - - - - - 0.732 0.730 calpain, small subunit 1 a [Source:ZFIN;Acc:ZDB-GENE-030113-3]
95. psmc5 ENSDARG00000015315 8458 1.452 0.709 - - - 0.743 - - - - proteasome 26S subunit, ATPase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6547]
96. hsbp1b ENSDARG00000041921 6170 1.451 - 0.733 - - - - - - 0.718 heat shock factor binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1721]
97. mars ENSDARG00000034396 3618 1.45 - 0.706 - - 0.744 - - - - methionyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030219-83]
98. ube4b ENSDARG00000037017 8012 1.446 - - 0.702 - 0.744 - - - - ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-020205-1]
99. EML4_1 EML4_1 8736 1.439 - 0.728 - - - - - 0.711 -
100. hnrnpk ENSDARG00000018914 8841 1.434 - - 0.700 - - - - - 0.734 heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]

There are 936 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA