Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lrrc40

Gene Name Gene ID Reads Annotation
lrrc40 ENSDARG00000017708 1156 leucine rich repeat containing 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6062]










Genes with expression patterns similar to lrrc40

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lrrc40 ENSDARG00000017708 1156 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 leucine rich repeat containing 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6062]
2. zgc:55733 ENSDARG00000103845 1550 2.508 0.951 - - - - - 0.787 0.770 - zgc:55733 [Source:ZFIN;Acc:ZDB-GENE-040426-791]
3. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 2.473 0.953 - - - - - 0.733 - 0.787 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
4. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 2.435 0.942 - - - - - 0.744 - 0.749 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
5. emc9 ENSDARG00000034633 686 2.394 - - - - - - 0.778 0.874 0.742 ER membrane protein complex subunit 9 [Source:ZFIN;Acc:ZDB-GENE-040426-693]
6. lsm14ab ENSDARG00000100553 3837 2.361 - - - - 0.869 - 0.761 0.731 - LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
7. C24H17orf96 C24H17orf96 1538 2.314 - - - - 0.898 - 0.702 - 0.714
8. cuedc2 ENSDARG00000039365 484 1.898 - - - - 0.926 - - 0.972 - CUE domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6283]
9. pelo ENSDARG00000055477 1927 1.888 0.988 - - - - - - 0.900 - pelota mRNA surveillance and ribosome rescue factor [Source:ZFIN;Acc:ZDB-GENE-040426-1074]
10. TOM1L2 ENSDARG00000056394 793 1.876 0.959 - - - - - - 0.917 - target of myb1 like 2 membrane trafficking protein [Source:HGNC Symbol;Acc:HGNC:11984]
11. mrrf ENSDARG00000034174, ENSDARG00000115754 791 1.833 - - - - 0.915 - - 0.918 - mitochondrial ribosome recycling factor [Source:ZFIN;Acc:ZDB-GENE-040704-12]
12. zic5 ENSDARG00000016022 1034 1.807 - - - - 0.911 - - 0.896 - zic family member 5 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040622-1]
13. SENP1 SENP1 1122 1.794 - - - - 0.916 - - 0.878 -
14. lmo4b ENSDARG00000054749, ENSDARG00000115402 1397 1.791 0.960 - - - - - - 0.831 - LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-030131-3570]
15. rpl7l1 ENSDARG00000042864 3256 1.79 - - - - 0.939 - - 0.851 - ribosomal protein L7-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-970]
16. e2f8 ENSDARG00000057323 1432 1.778 0.994 - - - - - 0.784 - - E2F transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-041111-260]
17. celf3b ENSDARG00000006983 171 1.771 - 0.839 - - - - - 0.932 - cugbp, Elav-like family member 3b [Source:ZFIN;Acc:ZDB-GENE-110408-50]
18. npepl1 ENSDARG00000012871 3064 1.763 0.925 - - - - 0.838 - - - aminopeptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-177]
19. cenpe ENSDARG00000063385 4428 1.753 0.855 - - - 0.898 - - - - centromere protein E [Source:ZFIN;Acc:ZDB-GENE-060929-860]
20. armc8 ENSDARG00000062258, ENSDARG00000110157 467 1.744 0.962 0.782 - - - - - - - armadillo repeat containing 8 [Source:ZFIN;Acc:ZDB-GENE-061027-88]
21. atp7a ENSDARG00000003699 476 1.741 - - - - - 0.829 - 0.912 - ATPase copper transporting alpha [Source:ZFIN;Acc:ZDB-GENE-060825-45]
22. klhl22 ENSDARG00000088807 324 1.741 - 0.863 - - - - 0.878 - - kelch-like family member 22 [Source:ZFIN;Acc:ZDB-GENE-081104-154]
23. ZNF337_21 ZNF337_21 53 1.74 - 0.802 - - - - - 0.938 -
24. wnt8b ENSDARG00000006911 98 1.732 - 0.797 - - - - - 0.935 - wingless-type MMTV integration site family, member 8b [Source:ZFIN;Acc:ZDB-GENE-990415-279]
25. scrn2 ENSDARG00000043497 204 1.73 - - - - - - 0.791 0.939 - secernin 2 [Source:ZFIN;Acc:ZDB-GENE-040724-75]
26. gclm ENSDARG00000018953 1712 1.728 0.940 - - - - - - 0.788 - glutamate-cysteine ligase, modifier subunit [Source:ZFIN;Acc:ZDB-GENE-030131-5906]
27. gins2 ENSDARG00000002304 1187 1.727 - 0.834 - - 0.893 - - - - GINS complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050419-19]
28. C1H7orf55 C1H7orf55 2552 1.721 - - - - 0.974 - 0.747 - -
29. itm2ba ENSDARG00000007098 5686 1.721 - - - - 0.929 - - 0.792 - integral membrane protein 2Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2352]
30. nf1b ENSDARG00000004184 548 1.716 - - - - - - 0.742 0.974 - neurofibromin 1b [Source:ZFIN;Acc:ZDB-GENE-091111-4]
31. prdm16 prdm16 1346 1.71 - - - - 0.924 - 0.786 - -
32. nuf2 ENSDARG00000034624 2252 1.706 - - - - 0.884 - 0.822 - - NUF2, NDC80 kinetochore complex component, homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1121]
33. exd3 ENSDARG00000063140 119 1.701 - 0.766 - - - - - 0.935 - exonuclease 3'-5' domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-091204-349]
34. trps1 ENSDARG00000104082 918 1.7 - - - - - - 0.780 0.920 - trichorhinophalangeal syndrome I [Source:ZFIN;Acc:ZDB-GENE-030131-8404]
35. camsap1b ENSDARG00000035122 492 1.699 - 0.831 - - - - - 0.868 - calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
36. bloc1s3 ENSDARG00000068828 502 1.698 - 0.776 - - 0.922 - - - - biogenesis of lysosomal organelles complex-1, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050913-10]
37. cep135 ENSDARG00000002991 164 1.694 - - - - - - 0.742 0.952 - centrosomal protein 135 [Source:ZFIN;Acc:ZDB-GENE-041210-325]
38. znf131 ENSDARG00000068400, ENSDARG00000110506 920 1.693 - - - - - - 0.771 0.922 - zinc finger protein 131 [Source:ZFIN;Acc:ZDB-GENE-040426-1563]
39. atp2a2a ENSDARG00000029439 940 1.69 - - - - 0.914 0.776 - - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a [Source:ZFIN;Acc:ZDB-GENE-040426-702]
40. cdk9 ENSDARG00000044811, ENSDARG00000111590 2524 1.69 0.950 - - - - 0.740 - - - cyclin-dependent kinase 9 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-321]
41. rbm4.2 ENSDARG00000055080 5241 1.69 0.905 - - - 0.785 - - - - RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3019]
42. htatip htatip 1553 1.689 - - - - 0.906 - - - 0.783
43. si:dkey-170k13.3 si:dkey-170k13.3 397 1.684 - 0.750 - - - - - 0.934 -
44. slco5a1 slco5a1 383 1.677 - 0.774 - - - - - 0.903 -
45. ireb2 ENSDARG00000021466 699 1.673 - 0.801 - - - - - 0.872 - iron-responsive element binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-051205-1]
46. igfbp2b ENSDARG00000031422 679 1.672 - 0.758 - - - - - 0.914 - insulin-like growth factor binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-090107-3]
47. pop5 ENSDARG00000053452 1347 1.664 - - - 0.719 - - - 0.945 - POP5 homolog, ribonuclease P/MRP subunit [Source:ZFIN;Acc:ZDB-GENE-050320-123]
48. ppat ENSDARG00000004517 3349 1.663 0.884 - - - - - - 0.779 - phosphoribosyl pyrophosphate amidotransferase [Source:ZFIN;Acc:ZDB-GENE-041210-323]
49. ube2d1a ENSDARG00000029107, ENSDARG00000111656 3658 1.662 0.937 - - - - - - 0.725 - ubiquitin-conjugating enzyme E2D 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1609]
50. tada3l ENSDARG00000058220, ENSDARG00000113214, ENSDARG00000115305 2257 1.661 - - - - - - 0.755 0.906 - transcriptional adaptor 3 (NGG1 homolog, yeast)-like [Source:ZFIN;Acc:ZDB-GENE-030131-6725]
51. si:dkey-30k6.5 ENSDARG00000057238 617 1.66 - 0.772 - - - - - 0.888 - si:dkey-30k6.5 [Source:ZFIN;Acc:ZDB-GENE-091204-299]
52. zhx2 zhx2 365 1.66 - 0.727 - - - - - 0.933 -
53. atf7ip ENSDARG00000069619 5495 1.658 - - - - - - 0.843 0.815 - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
54. FAM168B ENSDARG00000101733, ENSDARG00000113953, ENSDARG00000115746 2175 1.657 - - - - 0.894 - - - 0.763 family with sequence similarity 168, member B [Source:ZFIN;Acc:ZDB-GENE-060929-180]
55. xrcc5_1 ENSDARG00000099298 1533 1.655 - - - - - - 0.784 0.871 - X-ray repair complementing defective repair in Chinese hamster cells 5 [Source:ZFIN;Acc:ZDB-GENE-041008-108]
56. nol11 ENSDARG00000026767 2528 1.654 - - - - - - 0.812 0.842 - nucleolar protein 11 [Source:ZFIN;Acc:ZDB-GENE-030131-419]
57. ephb4a ENSDARG00000100725 1749 1.652 - - - - 0.899 - - 0.753 - eph receptor B4a [Source:ZFIN;Acc:ZDB-GENE-990415-62]
58. farsa ENSDARG00000098825 2813 1.65 0.937 - - - - - 0.713 - - phenylalanyl-tRNA synthetase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-050512-2]
59. plcg1 ENSDARG00000038442 5324 1.649 - - - - - - 0.733 0.916 - phospholipase C, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030421-3]
60. gclc ENSDARG00000013095 2146 1.644 - - - - 0.893 - - 0.751 - glutamate-cysteine ligase, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-030131-5056]
61. tmem35 ENSDARG00000052567 5685 1.64 - - - - 0.901 - - - 0.739 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
62. axin2 ENSDARG00000100149 4223 1.636 - - - - 0.841 - - 0.795 - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
63. lnx2b ENSDARG00000071478 654 1.635 - 0.703 - - - - - 0.932 - ligand of numb-protein X 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2500]
64. wu:fc51f04 wu:fc51f04 7074 1.635 0.836 - - - 0.799 - - - -
65. nxf1 ENSDARG00000055076 3251 1.634 - - - - 0.879 - 0.755 - - nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
66. aldocb ENSDARG00000019702 2111 1.632 0.925 0.707 - - - - - - - aldolase C, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-030821-1]
67. nup50 ENSDARG00000017454 4425 1.629 - - - - 0.875 - - 0.754 - nucleoporin 50 [Source:ZFIN;Acc:ZDB-GENE-030131-1689]
68. epb41l5 ENSDARG00000032324, ENSDARG00000114579 1610 1.629 - - - - - - 0.861 0.768 - erythrocyte membrane protein band 4.1 like 5 [Source:ZFIN;Acc:ZDB-GENE-030616-450]
69. WDR48 WDR48 448 1.629 - 0.718 - - - - - 0.911 -
70. lrpprc ENSDARG00000043970 3847 1.627 - - - - 0.790 - - 0.837 - leucine-rich pentatricopeptide repeat containing [Source:ZFIN;Acc:ZDB-GENE-030131-7887]
71. sin3b ENSDARG00000062472 2025 1.624 - - - - 0.917 - - - 0.707 SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
72. med22 ENSDARG00000014148 1307 1.621 - 0.715 - - - - - 0.906 - mediator complex subunit 22 [Source:ZFIN;Acc:ZDB-GENE-040625-156]
73. ddx1 ENSDARG00000032117 1295 1.621 - - - 0.712 0.909 - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 1 [Source:ZFIN;Acc:ZDB-GENE-041001-215]
74. znf865 ENSDARG00000036698 15532 1.62 - - - - 0.864 - 0.756 - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
75. pogza ENSDARG00000054778 1495 1.612 - - - - - - - 0.906 0.706 pogo transposable element derived with ZNF domain a [Source:ZFIN;Acc:ZDB-GENE-040914-76]
76. marcksa ENSDARG00000004049 2518 1.608 - - - - 0.868 - - - 0.740 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
77. fam134c fam134c 1550 1.607 - - - - 0.901 - - 0.706 -
78. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.607 - - - - 0.896 - - - 0.711 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
79. ppp4ca ENSDARG00000070570 8395 1.603 - - - - 0.898 - 0.705 - - protein phosphatase 4, catalytic subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-4433]
80. mrps15 ENSDARG00000109289 3258 1.599 - - - - 0.897 - - 0.702 - mitochondrial ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-040718-188]
81. abce1 ENSDARG00000007216 7502 1.597 - - - - 0.873 - 0.724 - - ATP-binding cassette, sub-family E (OABP), member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1995]
82. ppap2b ppap2b 2900 1.596 - - - - - - 0.701 0.895 -
83. stap2a ENSDARG00000092810 591 1.595 - - - - - - - 0.875 0.720 signal transducing adaptor family member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5383]
84. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.595 - - - - 0.882 - - - 0.713 ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
85. rbms3 ENSDARG00000044574 2514 1.595 - - - 0.751 - - 0.844 - - RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
86. ipo7 ENSDARG00000035751 7095 1.594 0.882 - - - - 0.712 - - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
87. srpk1b ENSDARG00000031560 2079 1.592 - - - - 0.875 - 0.717 - - SRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
88. utp3 ENSDARG00000056720 922 1.591 - - - 0.751 - - - 0.840 - UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040912-163]
89. nfatc2ip ENSDARG00000011360 603 1.584 - - - - - - - 0.849 0.735 nuclear factor of activated T cells 2 interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-9520]
90. ube2i ube2i 13024 1.584 0.872 - - - - - 0.712 - -
91. znf148 ENSDARG00000055106 528 1.583 - - - - - - 0.728 0.855 - zinc finger protein 148 [Source:ZFIN;Acc:ZDB-GENE-030131-8769]
92. nrarpb ENSDARG00000018958 6225 1.582 - - - - 0.844 - - - 0.738 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
93. fen1 ENSDARG00000011404 3358 1.575 - - - - 0.844 - 0.731 - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
94. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 1.574 - - - - - - 0.833 0.741 - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
95. SMIM13 ENSDARG00000089204, ENSDARG00000113880 457 1.573 - 0.753 - - - - 0.820 - - small integral membrane protein 13 [Source:ZFIN;Acc:ZDB-GENE-141212-279]
96. crfb5 crfb5 342 1.567 - 0.806 - 0.761 - - - - -
97. foxj1a ENSDARG00000101919 1095 1.563 - - - - - - 0.714 0.849 - forkhead box J1a [Source:ZFIN;Acc:ZDB-GENE-060929-1178]
98. snrpd3l ENSDARG00000076283 7655 1.561 - - - - 0.782 - 0.779 - - small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
99. gstm gstm 4064 1.561 - - - - - - 0.791 0.770 -
100. psme4b ENSDARG00000018742, ENSDARG00000112854, ENSDARG00000114902 2916 1.552 - - - 0.747 - - - 0.805 - proteasome activator subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100316-4]

There are 1998 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA