Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lphn3.1

Gene Name Gene ID Reads Annotation
lphn3.1 lphn3.1 756










Genes with expression patterns similar to lphn3.1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lphn3.1 lphn3.1 756 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. nbeaa ENSDARG00000070080 862 2.421 - - - - - - 0.827 0.801 0.793 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
3. cadm3 ENSDARG00000057013 1545 2.367 - - - - - 0.738 0.848 - 0.781 cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
4. ndrg4 ENSDARG00000103937 1234 2.357 - - - - - 0.753 0.815 - 0.789 NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
5. tmem35 ENSDARG00000052567 5685 2.354 - 0.807 - - - 0.733 - - 0.814 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
6. si:ch211-11c15.3 si:ch211-11c15.3 1279 2.35 - - - - - 0.719 0.889 - 0.742
7. coe2 coe2 1633 2.327 - - - - - 0.796 - 0.760 0.771
8. TMEM57 TMEM57 260 2.315 - - - - - - 0.806 0.728 0.781
9. tuba1c ENSDARG00000055216 8384 2.304 - - - - - 0.723 0.773 - 0.808 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
10. pax6a ENSDARG00000103379 3061 2.298 - - - - - 0.716 0.865 0.717 - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
11. NELL2A ENSDARG00000090690 840 2.297 0.720 - - 0.728 - - 0.849 - - neural EGFL like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7972]
12. gap43 ENSDARG00000099744 4114 2.284 - - - - - 0.750 0.734 - 0.800 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
13. foxk2 ENSDARG00000030583 2982 2.281 - - - - - 0.739 0.807 0.735 - forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
14. tmpob ENSDARG00000022978 8121 2.26 - - - - - 0.731 0.771 - 0.758 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
15. dpysl3 ENSDARG00000002587 4381 2.248 - - - - - 0.711 0.797 - 0.740 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
16. SALL2 ENSDARG00000075116 527 2.247 - - - - - 0.727 0.763 0.757 - spalt-like transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030829-32]
17. olfm1b ENSDARG00000014053 1392 2.243 0.718 - - - - 0.712 0.813 - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
18. fam219ab ENSDARG00000013813 591 2.239 - - - - - 0.734 0.766 0.739 - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
19. tox ENSDARG00000032317 9126 2.237 - - - - - 0.727 0.768 - 0.742 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
20. epha4b ENSDARG00000011600 3110 2.236 - - - - - 0.717 0.807 0.712 - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
21. fam60al 2846 2.234 - - - - - 0.748 0.779 0.707 - family with sequence similarity 60, member A, like
22. dpysl4 ENSDARG00000103490 534 2.211 - - - - - - 0.775 0.721 0.715 dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
23. si:dkey-28b4.8 ENSDARG00000002840 1277 2.208 - - - - - 0.740 0.767 0.701 - si:dkey-28b4.8 [Source:ZFIN;Acc:ZDB-GENE-090501-2]
24. dnajc5aa ENSDARG00000042948 2885 2.206 - - - - - 0.709 0.779 - 0.718 DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
25. nrarpb ENSDARG00000018958 6225 2.204 - - - - - 0.723 0.719 - 0.762 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
26. sema6a ENSDARG00000102165 1401 2.195 - - - - - 0.733 0.731 - 0.731 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:ZFIN;Acc:ZDB-GENE-030131-8004]
27. zgc:100920 ENSDARG00000042961, ENSDARG00000112929 1384 2.18 - 0.744 - - - - 0.706 - 0.730 zgc:100920 [Source:ZFIN;Acc:ZDB-GENE-040801-156]
28. rtn1b ENSDARG00000021143 1682 2.145 - - - - - 0.723 0.704 - 0.718 reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
29. tmcc2 ENSDARG00000046007 148 1.746 - - - - - - 0.896 0.850 - transmembrane and coiled-coil domain family 2 [Source:ZFIN;Acc:ZDB-GENE-091202-2]
30. pcdh18a ENSDARG00000089805 1096 1.686 - - - - - 0.814 0.872 - - protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]
31. prpf38b ENSDARG00000053101 1785 1.661 - 0.911 - - - - - - 0.750 pre-mRNA processing factor 38B [Source:ZFIN;Acc:ZDB-GENE-040426-2878]
32. fez1 ENSDARG00000023174 701 1.659 - - - - - - 0.907 0.752 - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
33. dpysl5a ENSDARG00000011141 1827 1.655 - - - - - - 0.845 - 0.810 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
34. MAP1A MAP1A 847 1.649 - - - - - 0.789 0.860 - -
35. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.643 - - - - - - 0.865 - 0.778 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
36. magi1a ENSDARG00000070145 547 1.64 - - - - - 0.728 0.912 - - membrane associated guanylate kinase, WW and PDZ domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-081105-13]
37. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.634 - - - - - - 0.837 0.797 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
38. arhgef2 ENSDARG00000075819 2173 1.63 - - - - - - - 0.767 0.863 rho/rac guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030717-1]
39. crabp1a ENSDARG00000045926 99 1.628 - - - - - - 0.869 - 0.759 cellular retinoic acid binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-020320-3]
40. otpa ENSDARG00000014201 2290 1.628 - - - - - 0.711 0.917 - - orthopedia homeobox a [Source:ZFIN;Acc:ZDB-GENE-070216-1]
41. INA INA 950 1.627 - - - - - 0.745 0.882 - -
42. brf1a ENSDARG00000017835 206 1.614 - 0.728 - - - - 0.886 - - BRF1, RNA polymerase III transcription initiation factor a [Source:ZFIN;Acc:ZDB-GENE-030131-6334]
43. gpr173 ENSDARG00000042922 238 1.613 - - - - - - 0.869 - 0.744 G protein-coupled receptor 173 [Source:ZFIN;Acc:ZDB-GENE-000710-1]
44. nova1 ENSDARG00000020178 4129 1.6 - - - - - 0.738 0.862 - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
45. scrt2 ENSDARG00000056175 4331 1.597 - - - - - 0.707 0.890 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
46. amph ENSDARG00000007663 599 1.595 - - - - - - 0.869 0.726 - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
47. scn8aa ENSDARG00000005775 792 1.594 - - - - - 0.721 0.873 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
48. lrp11 ENSDARG00000034076 313 1.594 - - - - - - 0.884 0.710 - low density lipoprotein receptor-related protein 11 [Source:ZFIN;Acc:ZDB-GENE-030131-7847]
49. RHOBTB1 ENSDARG00000079468 189 1.593 - - - - - - 0.869 - 0.724 Rho related BTB domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-130530-871]
50. adarb1a ENSDARG00000041609 476 1.592 - - - - - - 0.837 - 0.755 adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
51. tmem229b ENSDARG00000060569 516 1.591 - 0.709 - - - - 0.882 - - transmembrane protein 229B [Source:ZFIN;Acc:ZDB-GENE-060929-1154]
52. phf20a ENSDARG00000002750 90 1.587 - - - 0.718 - - 0.869 - - PHD finger protein 20, a [Source:ZFIN;Acc:ZDB-GENE-070912-270]
53. C21H5orf24 C21H5orf24 333 1.581 - - - - - - 0.877 - 0.704
54. zbtb18 ENSDARG00000028228 3653 1.581 - - - - - 0.773 - - 0.808 zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
55. si:dkey-88p24.9 si:dkey-88p24.9 1197 1.58 - 0.795 - 0.785 - - - - -
56. lhx1a ENSDARG00000014018 958 1.578 - - - - - - 0.808 - 0.770 LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
57. hes2.2 ENSDARG00000068168 197 1.576 - - - - - - 0.833 - 0.743 hes family bHLH transcription factor 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060825-55]
58. nrxn2a ENSDARG00000061454 291 1.575 - - - - - - 0.798 - 0.777 neurexin 2a [Source:ZFIN;Acc:ZDB-GENE-070206-5]
59. FAM171A2 FAM171A2 707 1.574 - - - - - - 0.834 - 0.740
60. SMARCA4 ENSDARG00000104339 48 1.574 - - - - - 0.705 0.869 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [Source:HGNC Symbol;Acc:HGNC:11100]
61. ROBO3_1 ROBO3_1 468 1.572 - - - - - 0.721 0.851 - -
62. grin1a ENSDARG00000027828 1327 1.571 - - - - - 0.755 0.816 - - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
63. rrs1 ENSDARG00000003941 1257 1.57 - 0.821 - - - - - 0.749 - RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-9345]
64. atp6v1b2 ENSDARG00000043465, ENSDARG00000113422 682 1.569 - - - - - 0.763 0.806 - - ATPase H+ transporting V1 subunit B2 [Source:ZFIN;Acc:ZDB-GENE-030711-4]
65. PACS1_1 PACS1_1 1264 1.568 - - - - - 0.818 - 0.750 -
66. wasf3 wasf3 3287 1.568 - - - - - 0.766 0.802 - -
67. msl2a ENSDARG00000038909 1357 1.566 - - - - - 0.755 - 0.811 - male-specific lethal 2 homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-449]
68. gpm6ab ENSDARG00000004621 5825 1.565 - - - - - - - 0.716 0.849 glycoprotein M6Ab [Source:ZFIN;Acc:ZDB-GENE-030710-8]
69. tmem178b ENSDARG00000006747 173 1.564 - - - - - 0.713 0.851 - - transmembrane protein 178B [Source:ZFIN;Acc:ZDB-GENE-040718-92]
70. spock3 ENSDARG00000070266, ENSDARG00000110158 934 1.56 - - - - - 0.745 0.815 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
71. stmn2b ENSDARG00000070537 1586 1.559 - - - - - 0.728 0.831 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
72. SLC22A23_1 SLC22A23_1 308 1.554 - - - - - - 0.843 - 0.711
73. ptpn5 ENSDARG00000074866 548 1.55 - - - - - 0.774 0.776 - - protein tyrosine phosphatase, non-receptor type 5 [Source:ZFIN;Acc:ZDB-GENE-101028-3]
74. zc3h12b ENSDARG00000062463, ENSDARG00000113648 402 1.55 - - - - - - 0.798 - 0.752 zinc finger CCCH-type containing 12B [Source:ZFIN;Acc:ZDB-GENE-060526-290]
75. ldb1a ENSDARG00000010137 3035 1.549 - - - - - - - 0.818 0.731 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
76. KIF1A KIF1A 1686 1.549 0.715 - - - - - 0.834 - -
77. CABZ01111990.1 CABZ01111990.1 4374 1.548 - - - - - - 0.795 0.753 -
78. hoxa9b ENSDARG00000056819 3081 1.546 - - - - - 0.790 0.756 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
79. syt11b ENSDARG00000056105 578 1.546 - - - - - - - 0.780 0.766 synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
80. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 1.544 - - - - - 0.718 0.826 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
81. tuba2 ENSDARG00000045014 1490 1.543 - - - - - - 0.781 - 0.762 tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
82. sfswap ENSDARG00000005980, ENSDARG00000112551 1022 1.542 - - - 0.842 - 0.700 - - - splicing factor SWAP [Source:ZFIN;Acc:ZDB-GENE-040426-931]
83. cdk6 ENSDARG00000070228 1778 1.54 - - - - - - - 0.760 0.780 cyclin-dependent kinase 6 [Source:ZFIN;Acc:ZDB-GENE-060503-786]
84. arid1aa ENSDARG00000101710 3644 1.536 - - - - - 0.774 - - 0.762 AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
85. creb1a ENSDARG00000053586 5068 1.536 - - - - - 0.746 - - 0.790 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
86. atp6v0cb ENSDARG00000036577 3472 1.536 - - - - - 0.764 0.772 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
87. gfap ENSDARG00000025301 5584 1.534 - - - - - 0.753 0.781 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
88. cdk5r1b ENSDARG00000045087 2075 1.534 - - - - - 0.729 0.805 - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
89. KLHL14 ENSDARG00000045275 155 1.533 - - - - - - 0.819 0.714 - kelch-like family member 14 [Source:ZFIN;Acc:ZDB-GENE-091204-223]
90. ELOVL4 ELOVL4 3026 1.532 - - - - - - 0.714 - 0.818
91. hnrnpub ENSDARG00000004735 16496 1.532 - - - - - 0.710 - - 0.822 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
92. stx1b ENSDARG00000000503 2724 1.532 - - - - - 0.713 0.819 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
93. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 1.532 - - - - - 0.720 0.812 - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
94. sh3gl2 sh3gl2 1305 1.532 - - - - - 0.703 0.829 - -
95. si:ch211-278j3.3 ENSDARG00000020284 478 1.529 - - - - - 0.744 0.785 - - si:ch211-278j3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-147]
96. rcor2 ENSDARG00000008278 1678 1.529 - - - - - - 0.810 0.719 - REST corepressor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1812]
97. prpsap2 ENSDARG00000019326 1463 1.529 - - - - - - - 0.745 0.784 phosphoribosyl pyrophosphate synthetase-associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2077]
98. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 1.528 - - - - - 0.789 0.739 - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
99. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.528 - - - - - - 0.719 - 0.809 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
100. vangl2 ENSDARG00000027397 2418 1.527 - - - 0.717 - 0.810 - - - VANGL planar cell polarity protein 2 [Source:ZFIN;Acc:ZDB-GENE-020507-3]

There are 1657 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA