Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lmx1a

Gene Name Gene ID Reads Annotation
lmx1a ENSDARG00000020354 111 LIM homeobox transcription factor 1, alpha [Source:ZFIN;Acc:ZDB-GENE-041014-332]










Genes with expression patterns similar to lmx1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lmx1a ENSDARG00000020354 111 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM homeobox transcription factor 1, alpha [Source:ZFIN;Acc:ZDB-GENE-041014-332]
2. slc52a2 ENSDARG00000102035 57 2.736 - - - 0.986 - 1.000 0.750 - - solute carrier family 52 (riboflavin transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2552]
3. cyp2j20 ENSDARG00000094057 44 2.641 - 1.000 - - - 0.750 0.891 - - cytochrome P450, family 2, subfamily J, polypeptide 20 [Source:ZFIN;Acc:ZDB-GENE-041210-324]
4. crispld1a ENSDARG00000077275 7 2 1.000 1.000 - - - - - - - cysteine-rich secretory protein LCCL domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-090612-1]
5. si:ch73-115f13.1 si:ch73-115f13.1 15 2 1.000 - - - - - 1.000 - -
6. GRIK3 ENSDARG00000077715 178 2 1.000 1.000 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
7. si:ch73-103b2.1 ENSDARG00000095944, ENSDARG00000099867 40 2 - 1.000 - - - - 1.000 - - si:ch73-103b2.1 [Source:ZFIN;Acc:ZDB-GENE-110408-42]
8. RIMS1 RIMS1 9 2 1.000 1.000 - - - - - - -
9. scfd2 ENSDARG00000040005, ENSDARG00000116272 7 2 - 1.000 - - - - 1.000 - - sec1 family domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050320-143]
10. HIST1H2BA ENSDARG00000116654 10 2 - 1.000 - - - - 1.000 - - histone cluster 1 H2B family member a [Source:HGNC Symbol;Acc:HGNC:18730]
11. adrb1_1 ENSDARG00000007490, ENSDARG00000115574 9 2 1.000 1.000 - - - - - - - adrenoceptor beta 1 [Source:ZFIN;Acc:ZDB-GENE-081022-145]
12. mamdc2b ENSDARG00000073695 26 1.986 - - - 0.986 - 1.000 - - - MAM domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091117-16]
13. camk1db ENSDARG00000017446 47 1.969 - 1.000 - - - 0.969 - - - calcium/calmodulin-dependent protein kinase 1Db [Source:ZFIN;Acc:ZDB-GENE-070112-1872]
14. si:ch211-215m21.17 si:ch211-215m21.17 14 1.963 - 1.000 - - - - 0.963 - -
15. hspbap1 ENSDARG00000033771 41 1.957 - 1.000 - - - - 0.957 - - hspb associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040808-38]
16. TMEM74 26 1.946 - 1.000 - - - - 0.946 - - transmembrane protein 74, transcript variant X3
17. CU570987.1 CU570987.1 7 1.946 - 1.000 - - - - - 0.946 -
18. UNC13A UNC13A 36 1.935 1.000 - - - - 0.935 - - -
19. si:dkey-97l20.5 si:dkey-97l20.5 33 1.915 - 1.000 - - - - 0.915 - -
20. CABZ01084273.1 CABZ01084273.1 16 1.911 - 1.000 - - - - - 0.911 -
21. prdm14 ENSDARG00000045371 106 1.898 - 1.000 - - - - - 0.898 - PR domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-030131-2709]
22. sox12 ENSDARG00000025847 681 1.895 0.895 1.000 - - - - - - - SRY (sex determining region Y)-box 12 [Source:ZFIN;Acc:ZDB-GENE-040724-33]
23. rgs7 rgs7 208 1.892 0.946 0.946 - - - - - - -
24. mmrn2a ENSDARG00000076135 37 1.878 1.000 - - - - - - 0.878 - multimerin 2a [Source:ZFIN;Acc:ZDB-GENE-080424-3]
25. C18H15orf59 C18H15orf59 80 1.874 - 1.000 - - - - 0.874 - -
26. CR848664.3 CR848664.3 183 1.868 - - - - - - 0.973 - 0.895
27. ncf4 ENSDARG00000040812, ENSDARG00000110339 45 1.86 - 1.000 - - - - - 0.860 - neutrophil cytosolic factor 4 [Source:ZFIN;Acc:ZDB-GENE-041124-1]
28. si:ch211-225h9.2 si:ch211-225h9.2 16 1.859 1.000 - - - - 0.859 - - -
29. CR847844.3 CR847844.3 1 1.859 1.000 - - - - 0.859 - - -
30. sdhaf1 ENSDARG00000092478 51 1.859 - 1.000 - - - 0.859 - - - succinate dehydrogenase complex assembly factor 1 [Source:ZFIN;Acc:ZDB-GENE-050809-56]
31. si:ch211-198c19.1 ENSDARG00000089333 3 1.859 - 1.000 - - - 0.859 - - - si:ch211-198c19.1 [Source:ZFIN;Acc:ZDB-GENE-100922-218]
32. aven ENSDARG00000002894 49 1.859 - - - - - 0.859 1.000 - - apoptosis, caspase activation inhibitor [Source:ZFIN;Acc:ZDB-GENE-041001-171]
33. si:dkey-40j3.3 ENSDARG00000103597 5 1.859 1.000 - - - - 0.859 - - - si:dkey-40j3.3 [Source:ZFIN;Acc:ZDB-GENE-110913-109]
34. si:ch211-122l14.7 ENSDARG00000095576 5 1.859 - 1.000 - - - 0.859 - - - si:ch211-122l14.7 [Source:ZFIN;Acc:ZDB-GENE-041014-263]
35. si:ch211-113a14.15_1 2 1.859 - 1.000 - - - 0.859 - - - si:ch211-113a14.15
36. zgc:110434 21 1.859 - 1.000 - - - 0.859 - - - zgc:110434
37. CR854899.1 ENSDARG00000102357 8 1.859 - - - - - 0.859 1.000 - -
38. TMC2 TMC2 5 1.859 - 1.000 - - - 0.859 - - -
39. si:ch211-218c6.9 si:ch211-218c6.9 40 1.859 - 1.000 - - - 0.859 - - -
40. tnr ENSDARG00000020771 20 1.854 1.000 - - - - - - 0.854 - tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
41. tmem91 ENSDARG00000068456 81 1.84 0.840 1.000 - - - - - - - transmembrane protein 91 [Source:ZFIN;Acc:ZDB-GENE-060503-581]
42. grid2ipb ENSDARG00000095603, ENSDARG00000111282 90 1.829 - - - 0.958 - - - 0.871 - glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, b [Source:ZFIN;Acc:ZDB-GENE-040724-161]
43. kcnh6 kcnh6 59 1.828 - - - 0.979 - - - 0.849 -
44. DNAI1 DNAI1 11 1.822 - 0.822 - - - - 1.000 - -
45. kcnip3b ENSDARG00000017880, ENSDARG00000109763 105 1.821 0.928 - - - - - 0.893 - - Kv channel interacting protein 3b, calsenilin [Source:ZFIN;Acc:ZDB-GENE-040426-1752]
46. scg5 ENSDARG00000032126, ENSDARG00000077045 29 1.82 0.820 1.000 - - - - - - - secretogranin V [Source:ZFIN;Acc:ZDB-GENE-040426-1687]
47. GJD2_1 GJD2_1 3045 1.82 0.820 1.000 - - - - - - -
48. CCDC135 ENSDARG00000100231 48 1.818 - - - - - 0.865 0.953 - - coiled-coil domain containing 135 [Source:ZFIN;Acc:ZDB-GENE-120406-10]
49. si:ch211-190k17.13 si:ch211-190k17.13 48 1.813 - - - - - 1.000 - - 0.813
50. si:ch73-381a20.2 si:ch73-381a20.2 11 1.811 - - - - - 0.859 0.952 - -
51. nkx1.2lb ENSDARG00000099427 220 1.81 0.929 0.881 - - - - - - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
52. NPDC1 NPDC1 126 1.802 1.000 0.802 - - - - - - -
53. gpr19 ENSDARG00000102226 17 1.801 1.000 - - - - - - - 0.801 G protein-coupled receptor 19 [Source:ZFIN;Acc:ZDB-GENE-040426-1295]
54. ogdhb ENSDARG00000103428 63 1.794 - - - - - 0.939 0.855 - - oxoglutarate (alpha-ketoglutarate) dehydrogenase b (lipoamide) [Source:ZFIN;Acc:ZDB-GENE-090311-8]
55. foxq1a ENSDARG00000030896 121 1.793 - 1.000 - - - - - - 0.793 forkhead box Q1a [Source:ZFIN;Acc:ZDB-GENE-070424-74]
56. zgc:193807 ENSDARG00000076652, ENSDARG00000105440 34 1.788 1.000 - - - - - - - 0.788 zgc:193807 [Source:ZFIN;Acc:ZDB-GENE-081022-42]
57. aldh2.2_1 ENSDARG00000028087 279 1.784 1.000 - - - - - - 0.784 - aldehyde dehydrogenase 2 family member, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-030326-5]
58. rlbp1b ENSDARG00000045808, ENSDARG00000109856 282 1.777 - 1.000 - - - - - - 0.777 retinaldehyde binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1870]
59. cldn11a ENSDARG00000020031 284 1.765 - - - - - - 1.000 - 0.765 claudin 11a [Source:ZFIN;Acc:ZDB-GENE-040718-369]
60. pif1 ENSDARG00000020289 216 1.764 0.764 1.000 - - - - - - - PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4928]
61. htr2cl1 ENSDARG00000018228, ENSDARG00000113913 131 1.76 - 1.000 - - - - - 0.760 - 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled-like 1 [Source:ZFIN;Acc:ZDB-GENE-081104-48]
62. si:dkey-119g10.4 si:dkey-119g10.4 7 1.759 - 1.000 - - - - 0.759 - -
63. SNORA54 SNORA54 232 1.758 - - - 0.879 - - - 0.879 -
64. cpeb1a ENSDARG00000045932 81 1.757 - 0.822 - - - - 0.935 - - cytoplasmic polyadenylation element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-080723-42]
65. si:dkeyp-73a2.2 ENSDARG00000079785 313 1.754 - - - - - - 0.932 0.822 - si:dkeyp-73a2.2 [Source:NCBI gene;Acc:100307112]
66. TMEM98 ENSDARG00000059743 214 1.747 - 1.000 - - - - 0.747 - - transmembrane protein 98 [Source:ZFIN;Acc:ZDB-GENE-070112-1092]
67. CLSTN2 ENSDARG00000060637 41 1.742 - 1.000 - - - - - 0.742 - calsyntenin 2 [Source:ZFIN;Acc:ZDB-GENE-070911-2]
68. PPFIBP1 PPFIBP1 46 1.74 - 0.881 - - - 0.859 - - -
69. mtrf1l ENSDARG00000060005 177 1.736 - - - 0.931 - - 0.805 - - mitochondrial translational release factor 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-8198]
70. CR388132.1 ENSDARG00000097728 61 1.735 - - - - - - 1.000 - 0.735
71. mirlet7i 192 1.735 - - - 0.869 - - 0.866 - - microRNA let-7i
72. CAMKK2 CAMKK2 184 1.719 0.783 - - 0.936 - - - - -
73. NTRK3 NTRK3 163 1.717 - 1.000 - - - 0.717 - - -
74. rapgef6 ENSDARG00000010945 3 1.717 1.000 - 0.717 - - - - - - Rap guanine nucleotide exchange factor (GEF) 6 [Source:ZFIN;Acc:ZDB-GENE-030131-6972]
75. mcat ENSDARG00000016613, ENSDARG00000096473 140 1.714 - - - 0.909 - - 0.805 - - malonyl CoA:ACP acyltransferase (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-041111-231]
76. EGLN1 EGLN1 62 1.705 0.946 0.759 - - - - - - -
77. CDH7 16 1.704 1.000 0.704 - - - - - - - cadherin 7, type 2, transcript variant X1
78. CACNG4 CACNG4 123 1.687 0.964 - - - - - 0.723 - -
79. LPL ENSDARG00000087697 18 1.684 - - - - - 0.768 0.916 - - lipoprotein lipase [Source:ZFIN;Acc:ZDB-GENE-990415-139]
80. adora1 adora1 149 1.681 - - - 0.958 - 0.723 - - -
81. cyr61l1 ENSDARG00000035422, ENSDARG00000112039, ENSDARG00000114683 332 1.673 - - - 0.923 - 0.750 - - - cysteine-rich, angiogenic inducer 61 like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-136]
82. NPPC_1 NPPC_1 11 1.672 - 0.881 - - - 0.791 - - -
83. pros1 ENSDARG00000068261 276 1.665 - - - 0.829 - - 0.836 - - protein S [Source:ZFIN;Acc:ZDB-GENE-061013-657]
84. gnb5b ENSDARG00000055377 98 1.656 0.758 0.898 - - - - - - - guanine nucleotide binding protein (G protein), beta 5b [Source:ZFIN;Acc:ZDB-GENE-040426-1712]
85. ccdc104 ccdc104 248 1.647 - - - 0.828 - - 0.819 - -
86. si:dkey-190g11.3 ENSDARG00000025914 49 1.637 0.821 0.816 - - - - - - - si:dkey-190g11.3 [Source:ZFIN;Acc:ZDB-GENE-081104-341]
87. si:ch211-10m5.3 si:ch211-10m5.3 10 1.631 0.715 - - - - - 0.916 - -
88. zgc:174315 ENSDARG00000079222 180 1.63 - - - 0.892 - - - 0.738 - zgc:174315 [Source:ZFIN;Acc:ZDB-GENE-080219-29]
89. si:ch211-145h19.1 31 1.623 0.764 - - - - 0.859 - - - si:ch211-145h19.1
90. dus1l ENSDARG00000089260 336 1.621 - - - 0.897 - - 0.724 - - dihydrouridine synthase 1-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-1435]
91. mmp13a ENSDARG00000012395, ENSDARG00000114451 178 1.615 - - - - - - 0.839 0.776 - matrix metallopeptidase 13a [Source:ZFIN;Acc:ZDB-GENE-031202-2]
92. npffr1l2 ENSDARG00000062631 127 1.596 0.799 0.797 - - - - - - - neuropeptide FF receptor 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-060526-110]
93. gpr63 ENSDARG00000074540 242 1.582 - - - - - 0.763 0.819 - - G protein-coupled receptor 63 [Source:ZFIN;Acc:ZDB-GENE-110411-183]
94. eno1b ENSDARG00000013750 63 1.58 - - - - - - - 0.797 0.783 enolase 1b, (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-1651]
95. SLC47A1_2 SLC47A1_2 50 1.575 - - - - - - 0.806 - 0.769
96. capn1b ENSDARG00000052748, ENSDARG00000117045 320 1.563 - 0.837 - 0.726 - - - - - calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
97. slc13a5 slc13a5 15 1.553 - 0.704 - - - - 0.849 - -
98. lbx1b ENSDARG00000018611 399 1.552 0.763 0.789 - - - - - - - ladybird homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050309-27]
99. napepld ENSDARG00000009252 228 1.551 - 0.806 - - - - - - 0.745 N-acyl phosphatidylethanolamine phospholipase D [Source:ZFIN;Acc:ZDB-GENE-030131-3856]
100. kcnj11l ENSDARG00000031438 369 1.55 0.706 - - 0.844 - - - - - potassium inwardly-rectifying channel, subfamily J, member 11, like [Source:ZFIN;Acc:ZDB-GENE-050222-2]

There are 1874 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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