Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lmo3

Gene Name Gene ID Reads Annotation
lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]










Genes with expression patterns similar to lmo3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
2. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 4.119 0.722 - - - - 0.938 0.838 0.894 0.727 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
3. unc119b ENSDARG00000044362 1528 3.868 0.738 - - 0.724 - 0.713 0.957 - 0.736 unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
4. bsk146 ENSDARG00000099069 274 3.626 - 0.921 - - - 0.873 0.858 0.974 - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
5. si:ch73-21g5.7 ENSDARG00000093156 9412 3.599 0.703 - - - 0.999 0.970 0.927 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
6. BX957337.1 BX957337.1 1685 3.565 - 0.762 - - - 0.997 0.821 0.985 -
7. tox ENSDARG00000032317 9126 3.551 - - - - 0.999 0.857 0.892 - 0.803 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
8. slc17a6b ENSDARG00000041150 823 3.474 - - - - - 0.922 0.902 0.906 0.744 solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
9. dpysl5a ENSDARG00000011141 1827 3.457 - 0.897 - - - 0.925 0.864 - 0.771 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
10. mnx2a ENSDARG00000042106 939 3.45 0.935 0.895 - - - 0.722 0.898 - - motor neuron and pancreas homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040415-1]
11. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 3.434 - 0.898 - 0.718 - 0.878 0.940 - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
12. st18 663 3.387 0.749 - - 0.753 - 0.994 0.891 - - suppression of tumorigenicity 18, zinc finger
13. sall3b ENSDARG00000057586 982 3.35 0.741 0.975 - - - 0.824 0.810 - - spalt-like transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9140]
14. fzd3a ENSDARG00000021664 1958 3.31 0.715 - - - - 0.740 0.922 0.933 - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
15. adam23a ENSDARG00000062323 580 3.267 - 0.767 - 0.735 - 0.894 0.871 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
16. tmem47 ENSDARG00000057322 4691 3.054 0.719 - - - - 0.749 0.740 0.846 - transmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
17. celsr2 ENSDARG00000019726, ENSDARG00000094388 4002 2.924 - - - - - 0.974 0.980 0.970 - cadherin, EGF LAG seven-pass G-type receptor 2 [Source:ZFIN;Acc:ZDB-GENE-070122-2]
18. slc6a1b ENSDARG00000039647 1301 2.774 - - - - - 0.918 0.908 0.948 - solute carrier family 6 (neurotransmitter transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-041114-57]
19. nmnat2 ENSDARG00000004580 370 2.763 - 0.932 - - - 0.928 0.903 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
20. nrarpb ENSDARG00000018958 6225 2.748 - - 0.909 - - 0.915 0.924 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
21. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 2.746 - 0.864 - - - 0.971 0.911 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
22. slc1a2b ENSDARG00000102453 3136 2.742 - - - - - 0.910 0.869 0.963 - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
23. atp1b4 ENSDARG00000053262 1337 2.741 - 0.811 - - - 0.979 0.951 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
24. camta1a ENSDARG00000077428, ENSDARG00000116922 176 2.74 - 0.921 - - - 0.946 0.873 - - calmodulin binding transcription activator 1a [Source:ZFIN;Acc:ZDB-GENE-090312-183]
25. tnika ENSDARG00000056218 728 2.74 - - - - - 0.912 0.860 0.968 - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
26. MON2 ENSDARG00000099798 2359 2.735 - - 0.992 - - 0.791 - 0.952 - MON2 homolog, regulator of endosome-to-Golgi trafficking [Source:ZFIN;Acc:ZDB-GENE-030131-2712]
27. ek1 ENSDARG00000020080 742 2.73 0.920 - - - - 0.877 0.933 - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
28. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.727 - - - - - 0.987 0.896 0.844 - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
29. cers6 ENSDARG00000053583 247 2.719 - 0.916 - - - 0.951 0.852 - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
30. lrrc4.2 ENSDARG00000003020 235 2.707 - 0.888 - - - 0.846 - 0.973 - leucine rich repeat containing 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-7997]
31. cnrip1a ENSDARG00000091683 1491 2.706 - 0.845 - - - 0.938 0.923 - - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
32. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.705 - 0.819 - - - 0.929 0.957 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
33. XKR7 ENSDARG00000026333 175 2.679 - 0.921 - - - 0.786 - 0.972 - XK, Kell blood group complex subunit-related family, member 7 [Source:ZFIN;Acc:ZDB-GENE-051113-336]
34. atp2b3b ENSDARG00000023445 1424 2.678 - 0.858 - - - 0.936 0.884 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
35. nadl1.1 1200 2.667 - - - - - 0.863 0.850 0.954 - neural adhesion molecule L1.1, transcript variant X1
36. mapk12b ENSDARG00000006409 2246 2.664 - 0.767 - - - 0.976 0.921 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
37. MANEAL ENSDARG00000056450 262 2.661 - - - - - 0.920 0.763 0.978 - mannosidase endo-alpha like [Source:HGNC Symbol;Acc:HGNC:26452]
38. syt9a ENSDARG00000003994 298 2.643 - 0.921 - - - 0.911 0.811 - - synaptotagmin IXa [Source:ZFIN;Acc:ZDB-GENE-031002-18]
39. cadm3 ENSDARG00000057013 1545 2.633 - - - - - 0.964 0.724 0.945 - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
40. PPFIA3 ENSDARG00000077053 310 2.632 - 0.921 - - - 0.816 0.895 - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 [Source:ZFIN;Acc:ZDB-GENE-100311-3]
41. stx1b ENSDARG00000000503 2724 2.623 - - - - - 0.923 0.842 0.858 - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
42. calb2a ENSDARG00000041062, ENSDARG00000110220 459 2.623 - 0.921 - - - 0.863 0.839 - - calbindin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1677]
43. napg napg 645 2.617 - - - - - 0.939 0.707 0.971 -
44. myt1b ENSDARG00000102879 5411 2.609 - 0.729 - - - 0.946 0.934 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
45. hmgb3a ENSDARG00000056725 15668 2.599 - - - - - 0.872 0.799 0.928 - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
46. zic1 ENSDARG00000015567 2520 2.599 - - - - - 0.948 0.948 - 0.703 zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
47. thsd7ba ENSDARG00000095022 231 2.596 - 0.918 - - - 0.896 0.782 - - thrombospondin, type I, domain containing 7Ba [Source:ZFIN;Acc:ZDB-GENE-070621-2]
48. KCNIP4 ENSDARG00000088100 86 2.595 - 0.921 - - - 0.811 0.863 - - potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
49. AP3B2 1874 2.594 - - - - - 0.919 0.712 0.963 - adaptor related protein complex 3 beta 2 subunit, transcript variant X2
50. fez1 ENSDARG00000023174 701 2.593 - - - - - 0.945 0.801 - 0.847 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
51. pcdh1gc5 ENSDARG00000104826 10052 2.592 0.725 - - - - 0.977 0.890 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
52. dnajc5aa ENSDARG00000042948 2885 2.592 - - - - - 0.793 0.908 0.891 - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
53. vim ENSDARG00000010008 3551 2.589 0.754 - - - - 0.875 0.960 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
54. ADAMTS3 ENSDARG00000060127 2839 2.586 0.881 0.812 - - - - 0.893 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
55. celf3a ENSDARG00000034668 2432 2.585 - - - - - 0.927 0.835 - 0.823 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
56. btg2 ENSDARG00000020298 6616 2.582 - - - - - 0.908 0.885 0.789 - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
57. UBE2QL1 ENSDARG00000079276 3474 2.577 - - 0.994 - - 0.764 0.819 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
58. vezf1a ENSDARG00000008247 1449 2.573 - - - - - 0.925 0.838 - 0.810 vascular endothelial zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-040108-4]
59. upf3a ENSDARG00000069297, ENSDARG00000111067 196 2.57 - 0.916 - - - 0.856 0.798 - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
60. fbxl16 ENSDARG00000060915 259 2.559 - - - - - 0.883 0.848 - 0.828 F-box and leucine-rich repeat protein 16 [Source:ZFIN;Acc:ZDB-GENE-120215-180]
61. nell2b ENSDARG00000062797 854 2.558 - 0.917 - - - 0.781 0.860 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
62. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 2.555 - - - - - - 0.909 0.925 0.721 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
63. stmn2b ENSDARG00000070537 1586 2.555 - 0.785 - - - 0.939 0.831 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
64. TDG TDG 1191 2.555 - - - - - 0.865 0.724 0.966 -
65. CABZ01065506.1 CABZ01065506.1 204 2.552 - 0.921 - - - 0.831 0.800 - -
66. atcaya ENSDARG00000071678 344 2.546 0.861 - - - - 0.904 0.781 - - ataxia, cerebellar, Cayman type a [Source:ZFIN;Acc:ZDB-GENE-070705-185]
67. CDK5R1 CDK5R1 562 2.542 - - - 0.753 - 0.827 0.962 - -
68. vgf ENSDARG00000105529 247 2.542 0.752 - - - - 0.859 0.931 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
69. pax3a ENSDARG00000010192 626 2.542 - 0.742 - - - 0.944 0.856 - - paired box 3a [Source:ZFIN;Acc:ZDB-GENE-980526-52]
70. slc32a1 ENSDARG00000059775 1092 2.539 - 0.788 - - - 0.922 0.829 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
71. kif1ab ENSDARG00000062024 794 2.537 0.726 - - - - 0.975 0.836 - - kinesin family member 1Ab [Source:ZFIN;Acc:ZDB-GENE-070912-480]
72. PROCA1 ENSDARG00000069823 343 2.53 0.759 - - - - 0.813 0.958 - - protein interacting with cyclin A1 [Source:ZFIN;Acc:ZDB-GENE-110418-1]
73. SNAP91 ENSDARG00000098809 556 2.527 - 0.810 - - - 0.891 0.826 - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
74. stap2a ENSDARG00000092810 591 2.525 - - - - - 0.889 0.913 - 0.723 signal transducing adaptor family member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5383]
75. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.524 0.773 - - - - 0.876 0.875 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
76. LDLRAD4 LDLRAD4 1237 2.518 - - - 0.728 - 0.820 - 0.970 -
77. gad2 ENSDARG00000015537 724 2.514 0.928 - - - - 0.794 0.792 - - glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
78. Sep-03 Sep-03 1124 2.514 - - - - - 0.897 0.764 0.853 -
79. olig2 ENSDARG00000040946 1405 2.51 0.947 0.720 - - - - 0.843 - - oligodendrocyte lineage transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4013]
80. cacna2d3 ENSDARG00000078760 211 2.51 - 0.836 - - - 0.941 0.733 - - calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
81. chat chat 463 2.509 0.821 - - - - 0.747 0.941 - -
82. tuba1c ENSDARG00000055216 8384 2.508 - - - - - 0.952 0.852 - 0.704 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
83. SLC5A7 SLC5A7 453 2.507 0.946 0.734 - - - - 0.827 - -
84. vsnl1a ENSDARG00000023228 1584 2.5 - 0.812 - - - 0.972 0.716 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
85. CABZ01051991.1 CABZ01051991.1 346 2.498 - - - 0.760 - 0.817 0.921 - -
86. zic2b ENSDARG00000037178, ENSDARG00000112354 993 2.493 - - - 0.767 - 0.883 0.843 - - zic family member 2 (odd-paired homolog, Drosophila) b [Source:ZFIN;Acc:ZDB-GENE-030219-92]
87. mnx2b ENSDARG00000030350 484 2.491 0.835 0.744 - - - - 0.912 - - motor neuron and pancreas homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-040415-2]
88. rgs20 ENSDARG00000038859 331 2.491 - - - 0.724 - 0.950 0.817 - - regulator of G protein signaling 20 [Source:ZFIN;Acc:ZDB-GENE-040718-128]
89. CLIP3 ENSDARG00000054456 734 2.478 - - - 0.742 - 0.897 0.839 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
90. appb ENSDARG00000055543, ENSDARG00000109552 4461 2.476 - - - 0.702 - 0.940 0.834 - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
91. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.472 0.722 - - - - 0.830 0.920 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
92. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 2.47 - - - - - 0.882 0.878 - 0.710 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
93. SHC3 ENSDARG00000098909 332 2.466 0.776 - - - - 0.809 0.881 - - SHC adaptor protein 3 [Source:HGNC Symbol;Acc:HGNC:18181]
94. lrrc4.1 ENSDARG00000069402 323 2.464 - 0.744 - - - 0.902 0.818 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
95. pou3f2a ENSDARG00000070220 817 2.461 0.758 - - - - - 0.968 - 0.735 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
96. CHL1 CHL1 1553 2.46 0.781 - - - - 0.763 0.916 - -
97. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.452 - - - - - 0.953 0.791 - 0.708 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
98. cdkl1 ENSDARG00000017329 3345 2.447 0.765 - - - - - 0.811 0.871 - cyclin-dependent kinase-like 1 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-040808-34]
99. gsx1 ENSDARG00000035735 1243 2.447 - - - - - 0.806 0.891 - 0.750 GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
100. C19H7orf41 C19H7orf41 2243 2.444 - - - 0.726 - 0.950 0.768 - -

There are 2912 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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