Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lmo2

Gene Name Gene ID Reads Annotation
lmo2 ENSDARG00000095019 1098 LIM domain only 2 (rhombotin-like 1) [Source:ZFIN;Acc:ZDB-GENE-980526-419]










Genes with expression patterns similar to lmo2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lmo2 ENSDARG00000095019 1098 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM domain only 2 (rhombotin-like 1) [Source:ZFIN;Acc:ZDB-GENE-980526-419]
2. timm10 ENSDARG00000069116 4459 3.2 - - - - - 0.767 0.770 0.735 0.928 translocase of inner mitochondrial membrane 10 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-427]
3. si:ch211-85n16.3 ENSDARG00000096346 1095 2.62 - 0.926 - - - - 0.857 - 0.837 si:ch211-85n16.3 [Source:ZFIN;Acc:ZDB-GENE-120215-137]
4. cdh5 ENSDARG00000075549 2288 2.536 0.858 - - - - - 0.929 0.749 - cadherin 5 [Source:ZFIN;Acc:ZDB-GENE-040816-1]
5. stab2 ENSDARG00000045748, ENSDARG00000111479 2952 2.517 0.845 - - - - 0.899 0.773 - - stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
6. prcp ENSDARG00000037883 473 2.502 0.894 - - - - 0.782 0.826 - - prolylcarboxypeptidase (angiotensinase C) [Source:ZFIN;Acc:ZDB-GENE-040718-447]
7. CABZ01018247.1 CABZ01018247.1 609 2.495 0.790 - - - - 0.814 0.891 - -
8. gpr182 ENSDARG00000036616 455 2.468 0.857 - - - - 0.811 0.800 - - G protein-coupled receptor 182 [Source:ZFIN;Acc:ZDB-GENE-030131-2361]
9. vsg1 1870 2.453 0.848 - - - - 0.746 0.859 - - vessel-specific 1
10. mrc1a ENSDARG00000102100 1260 2.452 0.854 - - - - 0.786 0.812 - - mannose receptor, C type 1a [Source:ZFIN;Acc:ZDB-GENE-090915-4]
11. etv2 ENSDARG00000053868 715 2.442 - 0.738 - - - - 0.710 - 0.994 ets variant 2 [Source:ZFIN;Acc:ZDB-GENE-050622-14]
12. stab1 ENSDARG00000076484 717 2.413 0.796 - - - - 0.719 0.898 - - stabilin 1 [Source:ZFIN;Acc:ZDB-GENE-050208-554]
13. tspan4 tspan4 692 2.267 0.742 0.722 - - - - 0.803 - -
14. acss2 ENSDARG00000037781, ENSDARG00000112371 3100 2.215 - 0.738 - - - 0.709 0.768 - - acyl-CoA synthetase short chain family member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-388]
15. cdkal1 ENSDARG00000104848 2102 1.765 - - - - - - - 0.783 0.982 CDK5 regulatory subunit associated protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1443]
16. crabp2a_1 ENSDARG00000073978 888 1.745 - - - - - - 0.777 - 0.968 cellular retinoic acid binding protein 2, a [Source:ZFIN;Acc:ZDB-GENE-020320-4]
17. nr1d4b ENSDARG00000059370 243 1.729 - - - - - - 0.736 - 0.993 nuclear receptor subfamily 1, group D, member 4b [Source:ZFIN;Acc:ZDB-GENE-080403-6]
18. tie1 ENSDARG00000004105 400 1.718 0.891 - - - - - 0.827 - - tyrosine kinase with immunoglobulin-like and EGF-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-990415-55]
19. mef2cb ENSDARG00000009418 1124 1.716 0.727 - - - - - - - 0.989 myocyte enhancer factor 2cb [Source:ZFIN;Acc:ZDB-GENE-040901-7]
20. SURF2 ENSDARG00000112476 592 1.699 - - - - - - 0.706 - 0.993 surfeit 2 [Source:ZFIN;Acc:ZDB-GENE-040801-86]
21. ccdc22 ENSDARG00000052379 2276 1.691 - - - - - - - 0.700 0.991 coiled-coil domain containing 22 [Source:ZFIN;Acc:ZDB-GENE-050913-93]
22. clec14a ENSDARG00000103533 718 1.689 0.882 - - - - - 0.807 - - C-type lectin domain containing 14A [Source:ZFIN;Acc:ZDB-GENE-030131-5536]
23. zcrb1 ENSDARG00000045691 1741 1.686 - - - - - - 0.752 - 0.934 zinc finger CCHC-type and RNA binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-041210-114]
24. il13ra2 ENSDARG00000039436, ENSDARG00000111925 286 1.673 - - - - - 0.834 0.839 - - interleukin 13 receptor, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030521-10]
25. snai1b ENSDARG00000046019 886 1.658 0.748 - - - - - - 0.910 - snail family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-980526-514]
26. tnfaip8l3 ENSDARG00000088709 345 1.643 - - - - - 0.891 0.752 - - tumor necrosis factor, alpha-induced protein 8-like 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1313]
27. fli1a ENSDARG00000054632 330 1.631 0.746 - - - - - 0.885 - - Fli-1 proto-oncogene, ETS transcription factor a [Source:ZFIN;Acc:ZDB-GENE-980526-426]
28. she ENSDARG00000087956 941 1.614 - - - - - 0.712 0.902 - - Src homology 2 domain containing E [Source:ZFIN;Acc:ZDB-GENE-090915-6]
29. tmem14c tmem14c 1649 1.599 - - - 0.781 - - 0.818 - -
30. sox18 ENSDARG00000058598 678 1.598 0.773 - - - - - 0.825 - - SRY (sex determining region Y)-box 18 [Source:ZFIN;Acc:ZDB-GENE-080725-1]
31. pus7 ENSDARG00000031774 195 1.596 0.853 - - - - - - 0.743 - pseudouridylate synthase 7 [Source:ZFIN;Acc:ZDB-GENE-060620-1]
32. C1QBP ENSDARG00000039887 11186 1.592 - - - - - - 0.846 0.746 - complement component 1, q subcomponent binding protein [Source:ZFIN;Acc:ZDB-GENE-050417-408]
33. FGD5 FGD5 250 1.587 0.863 - - - - - 0.724 - -
34. exoc3l2a ENSDARG00000008414 227 1.582 0.788 - - - - - 0.794 - - exocyst complex component 3-like 2a [Source:ZFIN;Acc:ZDB-GENE-060526-343]
35. CABZ01064972.1 ENSDARG00000098966 199 1.579 - 0.755 - - - 0.824 - - - uncharacterized LOC100538212 [Source:NCBI gene;Acc:100538212]
36. col4a1 ENSDARG00000055009 3083 1.578 0.721 - - - - - 0.857 - - collagen, type IV, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081105-114]
37. si:dkey-261h17.1 ENSDARG00000095268 11403 1.575 0.777 - - - - - 0.798 - - si:dkey-261h17.1 [Source:ZFIN;Acc:ZDB-GENE-030829-14]
38. foxd2 ENSDARG00000058133 1150 1.572 - - - - - 0.830 0.742 - - forkhead box D2 [Source:ZFIN;Acc:ZDB-GENE-980605-6]
39. CU467854.2 CU467854.2 298 1.571 0.756 0.815 - - - - - - -
40. npm1a ENSDARG00000014329, ENSDARG00000113199 31910 1.568 - - - - - 0.759 0.809 - - nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
41. fli1b ENSDARG00000040080 348 1.563 - - - - - 0.792 0.771 - - Fli-1 proto-oncogene, ETS transcription factor b [Source:ZFIN;Acc:ZDB-GENE-031114-3]
42. sort1a ENSDARG00000029402, ENSDARG00000117178 1480 1.56 - - - - - - 0.752 0.808 - sortilin 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2329]
43. CR376783.1 ENSDARG00000074235 259 1.558 0.710 - - - - - 0.848 - - V-set domain-containing T-cell activation inhibitor 1-like [Source:NCBI gene;Acc:797620]
44. pxk ENSDARG00000063195 851 1.552 - 0.726 - - - - 0.826 - - PX domain containing serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-050208-393]
45. timm9 ENSDARG00000043865 2456 1.55 - 0.770 - - - - 0.780 - - translocase of inner mitochondrial membrane 9 homolog [Source:ZFIN;Acc:ZDB-GENE-021206-14]
46. tmem161b ENSDARG00000055989 680 1.549 - - - - - - 0.832 0.717 - transmembrane protein 161B [Source:ZFIN;Acc:ZDB-GENE-040426-2693]
47. spata18 ENSDARG00000052343 216 1.546 - - - - - 0.749 0.797 - - spermatogenesis associated 18 [Source:ZFIN;Acc:ZDB-GENE-050522-306]
48. ptpn11b ENSDARG00000012340, ENSDARG00000114232 604 1.544 - 0.702 - - - - 0.842 - - protein tyrosine phosphatase, non-receptor type 11, b [Source:ZFIN;Acc:ZDB-GENE-040426-1158]
49. fam174b ENSDARG00000068709 1171 1.54 0.745 - - - - - 0.795 - - family with sequence similarity 174, member B [Source:ZFIN;Acc:ZDB-GENE-050419-78]
50. CR559945.3 CR559945.3 1029 1.536 - - - - - 0.828 - 0.708 -
51. si:ch211-245h7.2 si:ch211-245h7.2 317 1.536 - 0.724 - - - - 0.812 - -
52. lgmn ENSDARG00000039150 2788 1.526 - - - - - 0.711 0.815 - - legumain [Source:ZFIN;Acc:ZDB-GENE-021030-1]
53. C8H9orf116 C8H9orf116 379 1.525 - - - - - 0.718 0.807 - -
54. atp8b5b 55 1.522 - - - - - 0.767 0.755 - - ATPase, class I, type 8B, member 5b
55. cdc37l1 ENSDARG00000044265 360 1.518 0.759 0.759 - - - - - - - cell division cycle 37-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8865]
56. par1 par1 564 1.516 - - - - - 0.749 0.767 - -
57. hprt1 ENSDARG00000008884, ENSDARG00000117138 2486 1.515 - 0.727 - - - - 0.788 - - hypoxanthine phosphoribosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1918]
58. SLC44A4 ENSDARG00000102381 70 1.514 0.741 - - - - 0.773 - - - solute carrier family 44, member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1371]
59. si:ch73-61d6.3 ENSDARG00000057826 274 1.513 0.715 - - - - - 0.798 - - si:ch73-61d6.3 [Source:ZFIN;Acc:ZDB-GENE-091204-109]
60. pter ENSDARG00000063375 217 1.512 0.719 - - - - 0.793 - - - phosphotriesterase related [Source:ZFIN;Acc:ZDB-GENE-060825-190]
61. atp1a1a.4 ENSDARG00000001870 1864 1.512 - - - - - 0.780 0.732 - - ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-001212-4]
62. sele ENSDARG00000009123 122 1.5 - - - - - 0.712 0.788 - - selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
63. mrps10 ENSDARG00000045913 1453 1.5 - 0.787 - - - - 0.713 - - mitochondrial ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040914-39]
64. si:ch211-207j7.2 ENSDARG00000090793 316 1.499 - - - - - 0.785 0.714 - - si:ch211-207j7.2 [Source:ZFIN;Acc:ZDB-GENE-120215-232]
65. HAP1 HAP1 481 1.495 0.720 - - - - - 0.775 - -
66. TTF1_4 TTF1_4 504 1.494 - - - - - 0.756 - 0.738 -
67. nop58 ENSDARG00000104353 8497 1.494 - - - - - 0.763 0.731 - - NOP58 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2140]
68. tek ENSDARG00000028663 167 1.488 0.739 - - - - - 0.749 - - TEK tyrosine kinase, endothelial [Source:ZFIN;Acc:ZDB-GENE-990415-56]
69. CABZ01003826.1 CABZ01003826.1 486 1.488 - 0.723 - - - - - 0.765 -
70. mdm1 ENSDARG00000045675 64 1.488 0.779 - - - - - 0.709 - - Mdm1 nuclear protein homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-041210-117]
71. mrpl36 ENSDARG00000070607 4069 1.486 - - - - - 0.708 0.778 - - mitochondrial ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-060503-821]
72. angptl7 ENSDARG00000027582, ENSDARG00000110344 1574 1.476 0.722 - - - - - 0.754 - - angiopoietin-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-175]
73. myct1 myct1 217 1.475 0.771 - - - - - 0.704 - -
74. fth1b ENSDARG00000007975 96 1.475 0.761 - - - - - 0.714 - - ferritin, heavy polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-040912-30]
75. lysmd1 ENSDARG00000054789 277 1.473 - - - - - 0.746 - 0.727 - LysM, putative peptidoglycan-binding, domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1094]
76. cacng6b ENSDARG00000046079 258 1.466 0.762 - - - - - 0.704 - - calcium channel, voltage-dependent, gamma subunit 6b [Source:ZFIN;Acc:ZDB-GENE-100922-272]
77. pdlim3b ENSDARG00000014248, ENSDARG00000111275 708 1.466 - 0.734 - - - - - 0.732 - PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]
78. ccl25b ENSDARG00000070873 454 1.463 - - - - - 0.726 0.737 - - chemokine (C-C motif) ligand 25b [Source:ZFIN;Acc:ZDB-GENE-110222-2]
79. cxcl12b ENSDARG00000055100, ENSDARG00000113088 4476 1.463 - - - - - 0.706 0.757 - - chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030721-1]
80. si:dkey-100h21.2 si:dkey-100h21.2 30 1.461 0.727 - - - - - - 0.734 -
81. rad54l ENSDARG00000018623 837 1.461 0.760 - - - - - 0.701 - - RAD54 like [Source:ZFIN;Acc:ZDB-GENE-040426-968]
82. col4a2 ENSDARG00000104110 947 1.449 0.707 - - - - - 0.742 - - collagen, type IV, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-070725-3]
83. prkacbb_1 ENSDARG00000059125 83 1.448 0.727 - - - - 0.721 - - - protein kinase, cAMP-dependent, catalytic, beta b [Source:ZFIN;Acc:ZDB-GENE-050904-4]
84. sc:d0413 sc:d0413 121 1.447 0.713 0.734 - - - - - - -
85. mpx ENSDARG00000019521 562 1.441 0.727 - - - - - 0.714 - - myeloid-specific peroxidase [Source:ZFIN;Acc:ZDB-GENE-030131-9460]
86. C20H1orf112 C20H1orf112 316 1.435 - - - - - - 0.711 0.724 -
87. trap1 ENSDARG00000024317, ENSDARG00000114173 2189 1.435 - 0.710 - - - - 0.725 - - TNF receptor-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4257]
88. srek1 ENSDARG00000009764, ENSDARG00000114600 319 1.432 - 0.720 - - - - 0.712 - - splicing regulatory glutamine/lysine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-132]
89. kcnj13 ENSDARG00000043443 700 1.432 - - - - - - 0.726 0.706 - potassium inwardly-rectifying channel, subfamily J, member 13 [Source:ZFIN;Acc:ZDB-GENE-070129-1]
90. dffa ENSDARG00000055770 294 1.432 0.704 - - - - - 0.728 - - DNA fragmentation factor, alpha polypeptide [Source:ZFIN;Acc:ZDB-GENE-040718-376]
91. MSS51 ENSDARG00000075463 428 1.429 - 0.706 - - - 0.723 - - - MSS51 mitochondrial translational activator [Source:ZFIN;Acc:ZDB-GENE-130530-775]
92. ACER2 ENSDARG00000077782 603 1.428 - - - - - - 0.728 0.700 - alkaline ceramidase 2 [Source:ZFIN;Acc:ZDB-GENE-121026-1]
93. ponzr1 ENSDARG00000090444 540 1.425 - - - - - - 0.719 0.706 - plac8 onzin related protein 1 [Source:ZFIN;Acc:ZDB-GENE-070727-1]
94. RBM26 ENSDARG00000104130 1012 1.423 - 0.722 - - - - - 0.701 - RNA binding motif protein 26 [Source:ZFIN;Acc:ZDB-GENE-050706-50]
95. surf6 ENSDARG00000035427 1695 1.418 - - - - - - 0.714 0.704 - surfeit 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1333]
96. rhogd ENSDARG00000030608, ENSDARG00000112157 599 0.995 - - - - - - - - 0.995 ras homolog gene family, member Gd [Source:ZFIN;Acc:ZDB-GENE-040426-1504]
97. CABZ01073417.1 CABZ01073417.1 232 0.994 - - - - - - - - 0.994
98. SENP7 SENP7 1097 0.994 - - - - - - - - 0.994
99. CU695232.1 ENSDARG00000098286 1266 0.994 - - - - - - - - 0.994 zinc transporter ZIP9-B-like [Source:NCBI gene;Acc:571446]
100. ITPA ENSDARG00000057529 493 0.993 - - - - - - - - 0.993 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) [Source:ZFIN;Acc:ZDB-GENE-070705-218]

There are 1287 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA