Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lmo1

Gene Name Gene ID Reads Annotation
lmo1 ENSDARG00000034504 260 LIM domain only 1 [Source:ZFIN;Acc:ZDB-GENE-021115-6]










Genes with expression patterns similar to lmo1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lmo1 ENSDARG00000034504 260 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM domain only 1 [Source:ZFIN;Acc:ZDB-GENE-021115-6]
2. galnt14 ENSDARG00000023448 102 2.801 - 0.937 - 0.963 - - 0.901 - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) [Source:ZFIN;Acc:ZDB-GENE-041014-351]
3. hes2.2 ENSDARG00000068168 197 2.515 - - - 0.985 - 0.715 - - 0.815 hes family bHLH transcription factor 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060825-55]
4. tmem229b ENSDARG00000060569 516 2.477 - - - 0.927 - 0.850 0.700 - - transmembrane protein 229B [Source:ZFIN;Acc:ZDB-GENE-060929-1154]
5. C8H1orf106 C8H1orf106 2690 2.429 - - - 0.851 - 0.792 0.786 - -
6. st18 663 2.412 - - - 0.956 - - 0.752 - 0.704 suppression of tumorigenicity 18, zinc finger
7. unc119b ENSDARG00000044362 1528 2.342 - - - 0.892 - - 0.740 - 0.710 unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
8. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 2.331 - - - 0.821 - 0.785 0.725 - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
9. her4.3 ENSDARG00000070770 613 2.266 - - - - - 0.744 0.764 0.758 - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
10. elavl3 ENSDARG00000014420 8644 2.238 - - - 0.745 - 0.774 0.719 - - ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
11. tmem35 ENSDARG00000052567 5685 2.218 - - - - - 0.735 0.743 - 0.740 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
12. fam49a ENSDARG00000006672 939 1.887 - - - 0.981 - 0.906 - - - family with sequence similarity 49, member A [Source:ZFIN;Acc:ZDB-GENE-031002-50]
13. ANK1_1 ANK1_1 507 1.793 - - - 0.937 - 0.856 - - -
14. SPTBN4_1 ENSDARG00000092624 473 1.758 - - - 0.959 - 0.799 - - - spectrin beta, non-erythrocytic 4 [Source:HGNC Symbol;Acc:HGNC:14896]
15. acp6 ENSDARG00000040064 197 1.755 - - - 0.959 - 0.796 - - - acid phosphatase 6, lysophosphatidic [Source:ZFIN;Acc:ZDB-GENE-050208-290]
16. mb21d2a mb21d2a 421 1.733 - - - 0.953 - 0.780 - - -
17. rxrba ENSDARG00000078954 85 1.733 - 0.765 - 0.968 - - - - - retinoid x receptor, beta a [Source:ZFIN;Acc:ZDB-GENE-980526-436]
18. pmelb ENSDARG00000033760 206 1.719 - - - 0.974 - - - - 0.745 premelanosome protein b [Source:ZFIN;Acc:ZDB-GENE-050912-2]
19. usp49 ENSDARG00000000229 706 1.717 - - - 0.927 - 0.790 - - - ubiquitin specific peptidase 49 [Source:ZFIN;Acc:ZDB-GENE-050208-484]
20. rx1 ENSDARG00000071684 247 1.712 - - - 0.933 - - - - 0.779 retinal homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-236]
21. PPP2R2A PPP2R2A 50 1.693 - 0.852 - - - 0.841 - - -
22. si:ch211-10a23.2 ENSDARG00000060656 471 1.691 - - - 0.955 - 0.736 - - - si:ch211-10a23.2 [Source:ZFIN;Acc:ZDB-GENE-090313-9]
23. DHX32 DHX32 181 1.689 - - - 0.917 - 0.772 - - -
24. CABZ01051991.1 CABZ01051991.1 346 1.688 - - - 0.958 - - 0.730 - -
25. JMJD1C JMJD1C 289 1.684 - - - 0.971 - - 0.713 - -
26. CDK5R1 CDK5R1 562 1.684 - - - 0.951 - - 0.733 - -
27. syngr3a ENSDARG00000014871 405 1.678 - - - 0.966 - 0.712 - - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
28. ANO8 ANO8 380 1.675 - - - - - 0.839 0.836 - -
29. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 1.674 - - - 0.897 - 0.777 - - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
30. CASKIN1 ENSDARG00000046107 201 1.67 - 0.811 - - - 0.859 - - - CASK interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-071115-3]
31. adam23a ENSDARG00000062323 580 1.669 - - - 0.926 - - 0.743 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
32. bora ENSDARG00000042688, ENSDARG00000112916 402 1.649 - 0.775 - 0.874 - - - - - bora, aurora kinase A activator [Source:ZFIN;Acc:ZDB-GENE-041114-165]
33. zgc:114081 ENSDARG00000057899, ENSDARG00000113048 5 1.648 - 0.852 - - - 0.796 - - - zgc:114081 [Source:ZFIN;Acc:ZDB-GENE-050913-78]
34. mctp1b ENSDARG00000060871 20 1.648 - 0.852 - - - 0.796 - - - multiple C2 domains, transmembrane 1b [Source:ZFIN;Acc:ZDB-GENE-090313-382]
35. si:ch73-389b16.2 ENSDARG00000103802 340 1.642 - - - - - 0.920 0.722 - - si:ch73-389b16.2 [Source:ZFIN;Acc:ZDB-GENE-050411-113]
36. marcksa ENSDARG00000004049 2518 1.637 - - - 0.883 - - - - 0.754 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
37. dhx9 ENSDARG00000079725 1241 1.621 - - - 0.903 - - - - 0.718 DEAH (Asp-Glu-Ala-His) box helicase 9 [Source:ZFIN;Acc:ZDB-GENE-070912-171]
38. ndrg4 ENSDARG00000103937 1234 1.62 - - - 0.881 - - - - 0.739 NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
39. PSMG4 1007 1.62 - - - 0.788 - - 0.832 - - proteasome (prosome, macropain) assembly chaperone 4
40. ankrd1a ENSDARG00000075263, ENSDARG00000110628, ENSDARG00000114111 252 1.618 - 0.844 - - - - 0.774 - - ankyrin repeat domain 1a (cardiac muscle) [Source:ZFIN;Acc:ZDB-GENE-100405-1]
41. LDLRAD4 LDLRAD4 1237 1.614 - - - 0.900 - - - - 0.714
42. fam155b ENSDARG00000060152, ENSDARG00000114398 221 1.61 - - - - - 0.889 - 0.721 - family with sequence similarity 155, member B [Source:ZFIN;Acc:ZDB-GENE-060526-303]
43. her4.2 ENSDARG00000056729, ENSDARG00000094426 289 1.6 - - - - - 0.758 0.842 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
44. dync1i1 ENSDARG00000060948 554 1.6 - - - - - 0.831 0.769 - - dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
45. lgi2b ENSDARG00000069701, ENSDARG00000116343 66 1.595 - - - - - 0.837 0.758 - - leucine-rich repeat LGI family, member 2b [Source:ZFIN;Acc:ZDB-GENE-060217-3]
46. CABZ01087549.1 CABZ01087549.1 108 1.594 - - - - - 0.743 0.851 - -
47. adarb1a ENSDARG00000041609 476 1.59 - 0.852 - - - - - - 0.738 adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
48. SHC3 ENSDARG00000098909 332 1.59 - - - 0.829 - - 0.761 - - SHC adaptor protein 3 [Source:HGNC Symbol;Acc:HGNC:18181]
49. rnf220a ENSDARG00000060929 693 1.59 - - - 0.889 - 0.701 - - - ring finger protein 220a [Source:ZFIN;Acc:ZDB-GENE-060929-1006]
50. klc4_1 ENSDARG00000086985 22 1.584 0.732 0.852 - - - - - - - kinesin light chain 4 [Source:ZFIN;Acc:ZDB-GENE-050417-350]
51. fstl5 ENSDARG00000040198 213 1.582 - - - - - 0.781 0.801 - - follistatin-like 5 [Source:ZFIN;Acc:ZDB-GENE-070127-1]
52. arl14 ENSDARG00000063223 211 1.58 - 0.713 - - - - 0.867 - - ADP-ribosylation factor-like 14 [Source:ZFIN;Acc:ZDB-GENE-070705-288]
53. ppp1r14ab ENSDARG00000017710, ENSDARG00000110779 3296 1.576 - - - 0.861 - 0.715 - - - protein phosphatase 1, regulatory (inhibitor) subunit 14Ab [Source:ZFIN;Acc:ZDB-GENE-040426-1783]
54. fam166b ENSDARG00000100292 14 1.571 0.732 - - - - - 0.839 - - family with sequence similarity 166, member B [Source:ZFIN;Acc:ZDB-GENE-070209-41]
55. fyna ENSDARG00000011370 1679 1.571 - - - - - 0.848 0.723 - - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
56. CABZ01015475.1 ENSDARG00000104841 6 1.568 - 0.772 - - - 0.796 - - - jumonji domain containing 8 [Source:NCBI gene;Acc:100330060]
57. Sep-03 Sep-03 1124 1.568 - - - - - - 0.829 - 0.739
58. ahr1b ENSDARG00000023537 44 1.567 - - - - - 0.796 - - 0.771 aryl hydrocarbon receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050922-1]
59. CU459095.1 CU459095.1 7 1.561 - 0.765 - - - 0.796 - - -
60. C11H1orf116 C11H1orf116 9 1.561 0.732 0.829 - - - - - - -
61. BX511121.1 ENSDARG00000029997 1774 1.559 - - - - - 0.797 0.762 - -
62. crb1 ENSDARG00000100506, ENSDARG00000110621 373 1.556 - - - - - 0.803 0.753 - - crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
63. UBE2QL1 ENSDARG00000079276 3474 1.554 - - - 0.764 - 0.790 - - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
64. nptnb ENSDARG00000043864 165 1.537 - - - - - 0.781 0.756 - - neuroplastin b [Source:ZFIN;Acc:ZDB-GENE-040426-1821]
65. clstn1 ENSDARG00000031720 5286 1.536 - - - - - 0.783 0.753 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
66. trim36 ENSDARG00000062794 785 1.535 - - - - - 0.802 0.733 - - tripartite motif containing 36 [Source:ZFIN;Acc:ZDB-GENE-040426-2936]
67. ache ENSDARG00000031796 1985 1.533 - - - - - 0.722 0.811 - - acetylcholinesterase [Source:ZFIN;Acc:ZDB-GENE-010906-1]
68. msnb ENSDARG00000028740, ENSDARG00000109311, ENSDARG00000110190 24 1.531 - - - - - - - 0.724 0.807 moesin b [Source:ZFIN;Acc:ZDB-GENE-030717-7]
69. fzd5 ENSDARG00000025420 1082 1.53 - - - 0.761 - - - - 0.769 frizzled class receptor 5 [Source:ZFIN;Acc:ZDB-GENE-990415-218]
70. si:dkey-105n5.3 si:dkey-105n5.3 9 1.528 0.732 - - - - 0.796 - - -
71. BX548000.1 ENSDARG00000099044 45 1.528 0.732 - - - - 0.796 - - -
72. si:dkey-259p7.1 si:dkey-259p7.1 59 1.528 0.732 - - - - 0.796 - - -
73. PLB1 PLB1 20 1.527 0.732 - - - - - 0.795 - -
74. CU302376.1 CU302376.1 141 1.527 - - - - - 0.807 - - 0.720
75. PPP2R5B ENSDARG00000054931 213 1.526 - - - - - - 0.821 - 0.705 protein phosphatase 2, regulatory subunit B', beta [Source:ZFIN;Acc:ZDB-GENE-101208-1]
76. nbeaa ENSDARG00000070080 862 1.524 - - - - - 0.785 - - 0.739 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
77. csf2rb ENSDARG00000076586, ENSDARG00000112627, ENSDARG00000114668 9 1.523 0.812 - - - - 0.711 - - - colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) [Source:ZFIN;Acc:ZDB-GENE-080115-1]
78. ccdc92 ENSDARG00000041750, ENSDARG00000115475 283 1.523 0.701 - - - - 0.822 - - - coiled-coil domain containing 92 [Source:ZFIN;Acc:ZDB-GENE-051113-120]
79. foxn4 ENSDARG00000010591 2332 1.522 - - - - - - 0.761 - 0.761 forkhead box N4 [Source:ZFIN;Acc:ZDB-GENE-990415-277]
80. atp1b4 ENSDARG00000053262 1337 1.519 - - - 0.802 - - 0.717 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
81. syt11b ENSDARG00000056105 578 1.519 - - - - - 0.803 - - 0.716 synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
82. zgc:113030 ENSDARG00000069869 53 1.517 - 0.721 - - - 0.796 - - - zgc:113030 [Source:ZFIN;Acc:ZDB-GENE-050522-528]
83. THEM6 ENSDARG00000103914 49 1.513 - 0.775 - - - 0.738 - - - thioesterase superfamily member 6 [Source:HGNC Symbol;Acc:HGNC:29656]
84. CABZ01028287.1 CABZ01028287.1 626 1.512 - - - - - 0.776 0.736 - -
85. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 1.512 - - - - - - - 0.735 0.777 zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
86. her2 ENSDARG00000038205 3219 1.511 - - - - - 0.770 0.741 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
87. nkx6.1 ENSDARG00000022569 3779 1.511 - - - 0.762 - - 0.749 - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
88. mnx2b ENSDARG00000030350 484 1.509 - - - - - 0.703 0.806 - - motor neuron and pancreas homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-040415-2]
89. ntng1a ENSDARG00000014973 23 1.509 - - - - - 0.709 0.800 - - netrin g1a [Source:ZFIN;Acc:ZDB-GENE-091118-13]
90. pkd1b ENSDARG00000033029 461 1.509 - - - - - 0.780 0.729 - - polycystic kidney disease 1b [Source:ZFIN;Acc:ZDB-GENE-100707-2]
91. TRIM46 TRIM46 73 1.508 - - - - - 0.793 0.715 - -
92. tcf3a ENSDARG00000005915 12 1.507 0.732 0.775 - - - - - - - transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-51]
93. zc3h12b ENSDARG00000062463, ENSDARG00000113648 402 1.505 - - - - - 0.795 - - 0.710 zinc finger CCCH-type containing 12B [Source:ZFIN;Acc:ZDB-GENE-060526-290]
94. si:ch211-26b3.4 ENSDARG00000075491 50 1.505 - - - - - 0.796 0.709 - - si:ch211-26b3.4 [Source:ZFIN;Acc:ZDB-GENE-081104-60]
95. plcxd3 ENSDARG00000054794 112 1.504 - - - - - 0.789 0.715 - - phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-10]
96. fmnl2b ENSDARG00000075041 1744 1.503 - - - 0.754 - 0.749 - - - formin-like 2b [Source:ZFIN;Acc:ZDB-GENE-041111-182]
97. rheb ENSDARG00000090213 1432 1.502 - - - - - 0.765 0.737 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
98. faxcb ENSDARG00000078981 249 1.498 - - - - - 0.766 0.732 - - failed axon connections homolog b [Source:ZFIN;Acc:ZDB-GENE-100922-19]
99. her15.1 ENSDARG00000054560, ENSDARG00000054562 1500 1.495 - - - - - 0.744 0.751 - - hairy and enhancer of split-related 15, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030707-2]
100. zgc:100906 ENSDARG00000033599 344 1.494 - - - - - 0.745 0.749 - - zgc:100906 [Source:ZFIN;Acc:ZDB-GENE-040801-20]

There are 1900 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA