Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lin54

Gene Name Gene ID Reads Annotation
lin54 ENSDARG00000063194 2583 lin-54 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-060929-440]










Genes with expression patterns similar to lin54

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lin54 ENSDARG00000063194 2583 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 lin-54 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-060929-440]
2. ubl3b ENSDARG00000021556 1210 2.449 - - 0.983 - - - 0.710 0.756 - ubiquitin-like 3b [Source:ZFIN;Acc:ZDB-GENE-040630-4]
3. dbr1 ENSDARG00000056923, ENSDARG00000116603 2196 1.952 - - 0.969 - 0.983 - - - - debranching RNA lariats 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2466]
4. tmem50a ENSDARG00000015757 3244 1.944 - - 0.976 - 0.968 - - - - transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]
5. lima1 lima1 4760 1.933 - - 0.956 - 0.977 - - - -
6. TUBB8P7_1 TUBB8P7_1 2722 1.929 - - 0.950 - 0.979 - - - -
7. DLC1 ENSDARG00000079317 2149 1.923 - - 0.973 - 0.950 - - - - DLC1 Rho GTPase activating protein [Source:ZFIN;Acc:ZDB-GENE-130206-12]
8. eng1b eng1b 2544 1.916 - - 0.936 - 0.980 - - - -
9. axin2 ENSDARG00000100149 4223 1.895 - - 0.962 - 0.933 - - - - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
10. msh2 ENSDARG00000018022, ENSDARG00000115185 1301 1.887 - - - - 0.984 - - 0.903 - mutS homolog 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-2932]
11. ube4b ENSDARG00000037017 8012 1.865 - - 0.971 - 0.894 - - - - ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-020205-1]
12. hexim1 ENSDARG00000036482 4317 1.862 - - 0.944 - 0.918 - - - - hexamethylene bis-acetamide inducible 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4637]
13. hey2 ENSDARG00000013441 540 1.847 - - - - 0.981 - - 0.866 - hes-related family bHLH transcription factor with YRPW motif 2 [Source:ZFIN;Acc:ZDB-GENE-000526-1]
14. PCBP4 ENSDARG00000024276 3194 1.846 - - 0.978 - - - - 0.868 - poly(rC) binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2122]
15. yaf2 ENSDARG00000015966 1905 1.843 0.867 - 0.976 - - - - - - YY1 associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-115]
16. rbm39b ENSDARG00000041853 1421 1.842 - - 0.981 - - - - 0.861 - RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97]
17. ahi1 ENSDARG00000044056 951 1.835 - - 0.976 - - - - 0.859 - Abelson helper integration site 1 [Source:ZFIN;Acc:ZDB-GENE-060803-1]
18. rpl7l1 ENSDARG00000042864 3256 1.831 - - 0.940 - 0.891 - - - - ribosomal protein L7-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-970]
19. exosc6 ENSDARG00000036060, ENSDARG00000115735 531 1.824 - - 0.978 - - - - 0.846 - exosome component 6 [Source:ZFIN;Acc:ZDB-GENE-050522-362]
20. acadvl ENSDARG00000016687 5329 1.823 - - 0.935 - 0.888 - - - - acyl-CoA dehydrogenase very long chain [Source:ZFIN;Acc:ZDB-GENE-030131-899]
21. lpar6a ENSDARG00000062552 1348 1.818 0.841 - 0.977 - - - - - - lysophosphatidic acid receptor 6a [Source:ZFIN;Acc:ZDB-GENE-061013-343]
22. dvl3a ENSDARG00000015707 1132 1.817 0.836 - - - 0.981 - - - - dishevelled segment polarity protein 3a [Source:ZFIN;Acc:ZDB-GENE-010319-1]
23. FBXO33 ENSDARG00000075400 1164 1.806 - - - - 0.983 - - 0.823 - F-box protein 33 [Source:ZFIN;Acc:ZDB-GENE-100618-2]
24. ppp2r5eb ENSDARG00000069118 1902 1.786 - - 0.981 - - - - 0.805 - protein phosphatase 2, regulatory subunit B', epsilon isoform b [Source:ZFIN;Acc:ZDB-GENE-030904-6]
25. pou3f3a ENSDARG00000042032 2835 1.781 - - 0.923 - - - - 0.858 - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
26. mdh1a mdh1a 11035 1.781 - - 0.922 - 0.859 - - - -
27. exoc3l4 ENSDARG00000058180 923 1.747 - - - - 0.984 - 0.763 - - exocyst complex component 3-like 4 [Source:ZFIN;Acc:ZDB-GENE-081028-71]
28. h2afx ENSDARG00000029406 2116 1.734 - - - - 0.958 - - 0.776 - H2A histone family, member X [Source:ZFIN;Acc:ZDB-GENE-040426-987]
29. ephb4a ENSDARG00000100725 1749 1.73 - 0.758 - - 0.972 - - - - eph receptor B4a [Source:ZFIN;Acc:ZDB-GENE-990415-62]
30. wtip ENSDARG00000103607 797 1.715 - - 0.987 - - 0.728 - - - WT1 interacting protein [Source:ZFIN;Acc:ZDB-GENE-050419-261]
31. flad1 ENSDARG00000070390 604 1.714 - 0.731 0.983 - - - - - - flavin adenine dinucleotide synthetase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-44]
32. nr2f1a ENSDARG00000052695 5037 1.703 - - 0.854 - 0.849 - - - - nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
33. lgals1l1 ENSDARG00000088711 4515 1.693 - - 0.908 - - - - - 0.785 lectin, galactoside-binding, soluble, 1 (galectin 1)-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4905]
34. tor1 ENSDARG00000077950 1027 1.693 - 0.718 0.975 - - - - - - torsin family 1 [Source:ZFIN;Acc:ZDB-GENE-080917-50]
35. pola2 ENSDARG00000015070 2286 1.69 - 0.704 0.986 - - - - - - polymerase (DNA directed), alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-778]
36. si:dkey-71p21.9 si:dkey-71p21.9 603 1.682 0.702 - 0.980 - - - - - -
37. pdia4 ENSDARG00000018491 1914 1.676 - 0.781 - - - - - 0.895 - protein disulfide isomerase family A, member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5493]
38. SLC35A2 ENSDARG00000058990 289 1.672 0.811 - - - - - - 0.861 - solute carrier family 35 (UDP-galactose transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-030616-62]
39. eif3m ENSDARG00000013931 8117 1.671 - - 0.855 - 0.816 - - - - eukaryotic translation initiation factor 3, subunit M [Source:ZFIN;Acc:ZDB-GENE-040426-2643]
40. srpk1b ENSDARG00000031560 2079 1.669 - - - - 0.960 - - 0.709 - SRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
41. crkl ENSDARG00000028699 2966 1.667 - - 0.952 - - - 0.715 - - v-crk avian sarcoma virus CT10 oncogene homolog-like [Source:ZFIN;Acc:ZDB-GENE-040426-2951]
42. CT990561.1 ENSDARG00000058284 566 1.665 - - 0.951 - - - - 0.714 - EPH receptor A5 [Source:NCBI gene;Acc:797595]
43. pip5k2 pip5k2 5743 1.645 - - - - 0.932 - - - 0.713
44. FAM72B ENSDARG00000070621 501 1.635 - - - - - 0.755 - 0.880 - family with sequence similarity 72 member B [Source:HGNC Symbol;Acc:HGNC:24805]
45. TMEM235 ENSDARG00000089276 58 1.622 0.888 - - - - - 0.734 - - transmembrane protein 235 [Source:ZFIN;Acc:ZDB-GENE-130603-43]
46. mknk1 ENSDARG00000018411 749 1.608 - - - - - - 0.742 0.866 - MAP kinase interacting serine/threonine kinase 1 [Source:ZFIN;Acc:ZDB-GENE-080220-11]
47. phf21ab ENSDARG00000021378 1706 1.603 - - - - 0.720 - - 0.883 - PHD finger protein 21Ab [Source:ZFIN;Acc:ZDB-GENE-030131-6456]
48. ndc1 ENSDARG00000021120 2417 1.595 - 0.703 - - - - - 0.892 - NDC1 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-7176]
49. mpc2 ENSDARG00000024478 16959 1.592 - - 0.745 - 0.847 - - - - mitochondrial pyruvate carrier 2 [Source:ZFIN;Acc:ZDB-GENE-030131-330]
50. trim33 ENSDARG00000016181 1718 1.589 - 0.701 - - - - - 0.888 - tripartite motif containing 33 [Source:ZFIN;Acc:ZDB-GENE-030131-2773]
51. rpl8 ENSDARG00000014867 168995 1.562 - - - - 0.762 - - - 0.800 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
52. TSHZ2 ENSDARG00000079201 301 1.561 - - - - - - 0.714 0.847 - teashirt zinc finger homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-100322-2]
53. tbc1d12a ENSDARG00000038237 698 1.52 - - - 0.704 - - - 0.816 - TBC1 domain family, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3920]
54. PLEKHG1 2100 1.482 - - 0.748 - - - - 0.734 - pleckstrin homology and RhoGEF domain containing G1, transcript variant X2
55. sumo3b ENSDARG00000035993 3414 1.471 - - - - - 0.738 0.733 - - small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
56. zfand1 ENSDARG00000009178, ENSDARG00000114617 1192 1.436 - 0.714 - - - - - 0.722 - zinc finger, AN1-type domain 1 [Source:ZFIN;Acc:ZDB-GENE-040801-269]
57. lgi1a ENSDARG00000020493 1218 0.991 - - - - 0.991 - - - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
58. ppie ENSDARG00000103234, ENSDARG00000111596 511 0.99 - - 0.990 - - - - - - peptidylprolyl isomerase E (cyclophilin E) [Source:ZFIN;Acc:ZDB-GENE-050417-167]
59. TUSC3 ENSDARG00000078854 1021 0.99 - - 0.990 - - - - - - tumor suppressor candidate 3 [Source:ZFIN;Acc:ZDB-GENE-050522-381]
60. BX323045.3 BX323045.3 1044 0.99 - - 0.990 - - - - - -
61. aatf ENSDARG00000025467, ENSDARG00000109548 796 0.99 - - - - 0.990 - - - - apoptosis antagonizing transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-9654]
62. toporsb ENSDARG00000105028 1898 0.989 - - - - 0.989 - - - - topoisomerase I binding, arginine/serine-rich b [Source:ZFIN;Acc:ZDB-GENE-110728-3]
63. bbs2 ENSDARG00000041621, ENSDARG00000110124 321 0.989 - - 0.989 - - - - - - Bardet-Biedl syndrome 2 [Source:ZFIN;Acc:ZDB-GENE-020801-1]
64. smn1 ENSDARG00000018494 1024 0.989 - - - - 0.989 - - - - survival of motor neuron 1, telomeric [Source:ZFIN;Acc:ZDB-GENE-990715-16]
65. SENP1 SENP1 1122 0.988 - - - - 0.988 - - - -
66. katnbl1 ENSDARG00000042522 1086 0.988 - - - - 0.988 - - - - katanin p80 subunit B-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4155]
67. pip5k1bb ENSDARG00000006508 2812 0.988 - - - - 0.988 - - - - phosphatidylinositol-4-phosphate 5-kinase, type I, beta b [Source:ZFIN;Acc:ZDB-GENE-040912-141]
68. rfc1 ENSDARG00000054799 1416 0.988 - - - - 0.988 - - - - replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
69. pan3 ENSDARG00000031637, ENSDARG00000111004 613 0.987 - - - - 0.987 - - - - poly(A) specific ribonuclease subunit PAN3 [Source:ZFIN;Acc:ZDB-GENE-070928-13]
70. foxd1 ENSDARG00000029179 726 0.987 - - 0.987 - - - - - - forkhead box D1 [Source:ZFIN;Acc:ZDB-GENE-040426-2094]
71. usp16 ENSDARG00000060633 684 0.987 - - - - 0.987 - - - - ubiquitin specific peptidase 16 [Source:ZFIN;Acc:ZDB-GENE-030131-4153]
72. FOXL2 239 0.987 - - - - 0.987 - - - - forkhead box L2, transcript variant X1
73. st8sia6 ENSDARG00000021195 2244 0.987 - - - - 0.987 - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-060322-9]
74. tmem194b tmem194b 724 0.987 - - 0.987 - - - - - -
75. UBE2D2 ENSDARG00000043484 11723 0.987 - - - - - - - - 0.987 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-120312-1]
76. ccr10 ENSDARG00000040643 255 0.987 - - - - 0.987 - - - - chemokine (C-C motif) receptor 10 [Source:ZFIN;Acc:ZDB-GENE-040718-424]
77. nlk1 ENSDARG00000006566 1123 0.987 - - 0.987 - - - - - - nemo-like kinase, type 1 [Source:ZFIN;Acc:ZDB-GENE-040701-1]
78. slc2a15b ENSDARG00000053269 899 0.987 - - - - 0.987 - - - - solute carrier family 2 (facilitated glucose transporter), member 15b [Source:ZFIN;Acc:ZDB-GENE-050508-1]
79. ercc6 ENSDARG00000075612 1175 0.987 - - - - 0.987 - - - - excision repair cross-complementation group 6 [Source:ZFIN;Acc:ZDB-GENE-070228-1]
80. dbf4 ENSDARG00000074796 489 0.986 - - 0.986 - - - - - - DBF4 zinc finger [Source:ZFIN;Acc:ZDB-GENE-091020-13]
81. myl2b ENSDARG00000053424 226 0.986 - - - - 0.986 - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
82. gorab ENSDARG00000042031 483 0.986 - - - - 0.986 - - - - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
83. larp7 ENSDARG00000017315 1194 0.986 - - - - 0.986 - - - - La ribonucleoprotein domain family, member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-6896]
84. tbpl1 ENSDARG00000036868 711 0.986 - - 0.986 - - - - - - TBP-like 1 [Source:ZFIN;Acc:ZDB-GENE-040520-2]
85. xpc ENSDARG00000039754 515 0.986 - - 0.986 - - - - - - xeroderma pigmentosum, complementation group C [Source:ZFIN;Acc:ZDB-GENE-030131-8461]
86. si:ch211-283l16.1 ENSDARG00000112586 131 0.986 - - 0.986 - - - - - - si:ch211-283l16.1 [Source:ZFIN;Acc:ZDB-GENE-110913-44]
87. thbs1b ENSDARG00000010785 3095 0.986 - - 0.986 - - - - - - thrombospondin 1b [Source:ZFIN;Acc:ZDB-GENE-020708-1]
88. dopey1 438 0.986 - - - - 0.986 - - - - dopey family member 1, transcript variant X4
89. rexo1 ENSDARG00000026986 770 0.986 - - 0.986 - - - - - - REX1, RNA exonuclease 1 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-1650]
90. CABZ01068153.1 CABZ01068153.1 211 0.986 - - 0.986 - - - - - -
91. fam193b ENSDARG00000102831 442 0.986 - - - - 0.986 - - - - family with sequence similarity 193, member B [Source:ZFIN;Acc:ZDB-GENE-111102-1]
92. pfkpb ENSDARG00000012801 223 0.986 - - - - 0.986 - - - - phosphofructokinase, platelet b [Source:ZFIN;Acc:ZDB-GENE-070912-634]
93. ccdc28b ENSDARG00000011222 528 0.986 - - - - 0.986 - - - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
94. pdpk1b ENSDARG00000018285 957 0.986 - - - - 0.986 - - - - 3-phosphoinositide dependent protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1820]
95. clk2a ENSDARG00000062954 1890 0.986 - - 0.986 - - - - - - CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
96. prr18 ENSDARG00000093768 409 0.986 - - 0.986 - - - - - - proline rich 18 [Source:ZFIN;Acc:ZDB-GENE-081107-6]
97. aldh16a1 ENSDARG00000037935 617 0.986 - - - - 0.986 - - - - aldehyde dehydrogenase 16 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-070112-2062]
98. UBE2QL1 ENSDARG00000079276 3474 0.986 - - - - 0.986 - - - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
99. SEMA4C ENSDARG00000079611 610 0.986 - - 0.986 - - - - - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:ZFIN;Acc:ZDB-GENE-080303-16]
100. lrch2 ENSDARG00000075580, ENSDARG00000116418 255 0.986 - - - - 0.986 - - - - leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-080114-1]

There are 1308 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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