Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lin28a

Gene Name Gene ID Reads Annotation
lin28a ENSDARG00000016999 723 lin-28 homolog A (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-747]










Genes with expression patterns similar to lin28a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lin28a ENSDARG00000016999 723 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 lin-28 homolog A (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-747]
2. polr2i ENSDARG00000040443, ENSDARG00000110652 879 1.573 - 0.750 - - - - 0.823 - - polymerase (RNA) II (DNA directed) polypeptide I [Source:ZFIN;Acc:ZDB-GENE-041010-106]
3. TMEM55B_1 TMEM55B_1 495 1.54 - 0.779 - - - - 0.761 - -
4. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.522 - - - - - 0.782 0.740 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
5. sulf2l sulf2l 4980 1.512 - - 0.759 - - - 0.753 - -
6. KCNJ6 ENSDARG00000058985 71 1.511 - - - - - 0.725 0.786 - - potassium voltage-gated channel subfamily J member 6 [Source:HGNC Symbol;Acc:HGNC:6267]
7. rnaseh2b ENSDARG00000005128, ENSDARG00000111990, ENSDARG00000115076 391 1.506 - 0.748 - - - - 0.758 - - ribonuclease H2, subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1090]
8. SSBP4 ENSDARG00000056483 5156 1.483 - - 0.737 - - - 0.746 - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
9. BUD13 BUD13 594 1.481 - 0.772 - - - - 0.709 - -
10. epb41a ENSDARG00000099283 860 1.465 - - 0.756 - - - 0.709 - - erythrocyte membrane protein band 4.1a [Source:ZFIN;Acc:ZDB-GENE-070705-81]
11. atg13 ENSDARG00000036040 1251 1.445 - - - 0.724 - 0.721 - - - ATG13 autophagy related 13 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1149]
12. si:ch211-288g17.3 ENSDARG00000070959 2425 1.432 - - 0.713 - - - 0.719 - - si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
13. srpk1b ENSDARG00000031560 2079 1.427 - - 0.726 - - - 0.701 - - SRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
14. RASGRF2 RASGRF2 644 0.873 - - - - - - 0.873 - -
15. gcfc2 ENSDARG00000079020 479 0.87 - - - - - - 0.870 - - GC-rich sequence DNA-binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-080204-19]
16. nme5 ENSDARG00000041617 135 0.863 - - - - - - 0.863 - - NME/NM23 family member 5 [Source:ZFIN;Acc:ZDB-GENE-040718-221]
17. rfc3 ENSDARG00000055969, ENSDARG00000112402 1448 0.845 - - - - - - 0.845 - - replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3]
18. JAKMIP1 ENSDARG00000076090 55 0.841 - - - - - - 0.841 - - janus kinase and microtubule interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-110208-7]
19. ccdc101 ccdc101 778 0.84 - - - - - 0.840 - - -
20. map7d2b ENSDARG00000045316 702 0.835 - - - - - - 0.835 - - MAP7 domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091118-82]
21. ift52 ENSDARG00000045025 606 0.832 - - - - - - 0.832 - - intraflagellar transport 52 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-040614-3]
22. haus3 ENSDARG00000061385, ENSDARG00000110959 343 0.832 - - - - - - 0.832 - - HAUS augmin-like complex, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-060929-592]
23. PPP1R9B PPP1R9B 855 0.832 - - - - - - 0.832 - -
24. cbx2 ENSDARG00000044938 1576 0.831 - 0.831 - - - - - - - chromobox homolog 2 (Drosophila Pc class) [Source:ZFIN;Acc:ZDB-GENE-030131-5502]
25. rcn2 ENSDARG00000039378, ENSDARG00000110051, ENSDARG00000113764 61 0.828 - - - - - - 0.828 - - reticulocalbin 2 [Source:ZFIN;Acc:ZDB-GENE-050706-62]
26. SNORA74 SNORA74 284 0.826 - - - - - - 0.826 - -
27. fam203a fam203a 570 0.826 - 0.826 - - - - - - -
28. alad ENSDARG00000100372 1711 0.826 - 0.826 - - - - - - - aminolevulinate dehydratase [Source:ZFIN;Acc:ZDB-GENE-050417-123]
29. CR388042.1 ENSDARG00000106267 18 0.825 - - - - - - 0.825 - -
30. sult4a1 ENSDARG00000101967 205 0.825 - - - - - - 0.825 - - sulfotransferase family 4A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060421-2705]
31. mical3b ENSDARG00000094732 179 0.825 - - - - - 0.825 - - - microtubule associated monooxygenase, calponin and LIM domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-050211-1]
32. dscc1 ENSDARG00000019907 720 0.82 - 0.820 - - - - - - - DNA replication and sister chromatid cohesion 1 [Source:ZFIN;Acc:ZDB-GENE-040912-35]
33. armc4 ENSDARG00000055128 220 0.82 - - - - - - 0.820 - - armadillo repeat containing 4 [Source:ZFIN;Acc:ZDB-GENE-100316-7]
34. pacs1a ENSDARG00000044556, ENSDARG00000117043 914 0.82 - 0.820 - - - - - - - phosphofurin acidic cluster sorting protein 1a [Source:ZFIN;Acc:ZDB-GENE-050208-244]
35. zbtb17 ENSDARG00000074548 661 0.82 - - - - - 0.820 - - - zinc finger and BTB domain containing 17 [Source:ZFIN;Acc:ZDB-GENE-090313-240]
36. MCTP1 MCTP1 219 0.82 - - - - - - 0.820 - -
37. CLDND1 CLDND1 155 0.819 - - - - - - 0.819 - -
38. HBQ1 HBQ1 413 0.819 - 0.819 - - - - - - -
39. ttpal ENSDARG00000070644, ENSDARG00000112925 471 0.817 - - - - - 0.817 - - - tocopherol (alpha) transfer protein-like [Source:ZFIN;Acc:ZDB-GENE-030131-296]
40. ucp3 ENSDARG00000091209 137 0.817 - 0.817 - - - - - - - uncoupling protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1317]
41. kctd16a ENSDARG00000004648, ENSDARG00000114292, ENSDARG00000117199 80 0.817 - - - - - - 0.817 - - potassium channel tetramerization domain containing 16a [Source:ZFIN;Acc:ZDB-GENE-060117-1]
42. rbm41 ENSDARG00000054096 498 0.816 - - - - - 0.816 - - - RNA binding motif protein 41 [Source:ZFIN;Acc:ZDB-GENE-041114-107]
43. ddx23 ENSDARG00000021945, ENSDARG00000116153 2265 0.815 - - - - - - 0.815 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Source:ZFIN;Acc:ZDB-GENE-030131-6215]
44. rbm15b ENSDARG00000078966, ENSDARG00000112832 1888 0.814 - - - - - - 0.814 - - RNA binding motif protein 15B [Source:ZFIN;Acc:ZDB-GENE-080204-91]
45. CR936437.1 CR936437.1 6465 0.812 - - - - - - 0.812 - -
46. agbl4 ENSDARG00000068050, ENSDARG00000110838 201 0.811 - - - - - - 0.811 - - ATP/GTP binding protein-like 4 [Source:ZFIN;Acc:ZDB-GENE-081104-437]
47. mta2 ENSDARG00000013031 2932 0.811 - - - - - - 0.811 - - metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
48. BX539313.4 BX539313.4 1858 0.811 - - - - - - 0.811 - -
49. rpl7a ENSDARG00000019230 1204 0.811 - 0.811 - - - - - - - ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-031001-9]
50. UBE2D2 ENSDARG00000043484 11723 0.81 - - - - - 0.810 - - - ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-120312-1]
51. st3gal2 ENSDARG00000112898 370 0.809 - - - - - - 0.809 - - ST3 beta-galactoside alpha-2,3-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050419-181]
52. cux1a ENSDARG00000078459 3914 0.808 - - - - - - 0.808 - - cut-like homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5868]
53. tsn ENSDARG00000041830, ENSDARG00000111147 1268 0.807 - - - - - 0.807 - - - translin [Source:ZFIN;Acc:ZDB-GENE-030131-6039]
54. cluap1 ENSDARG00000079110 280 0.807 - - - - - - 0.807 - - clusterin associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1943]
55. sdc3 3788 0.807 - - 0.807 - - - - - - syndecan 3
56. sars ENSDARG00000008237 3330 0.805 - 0.805 - - - - - - - seryl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040831-1]
57. CABZ01097761.1 ENSDARG00000116119 445 0.804 - 0.804 - - - - - - - dual specificity protein phosphatase 13-like [Source:NCBI gene;Acc:100537679]
58. mrgbp ENSDARG00000028894, ENSDARG00000110790 1316 0.803 - - - - - - 0.803 - - MRG/MORF4L binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1698]
59. CKAP2L ENSDARG00000100573 1136 0.803 - - - - - - 0.803 - - cytoskeleton associated protein 2-like [Source:ZFIN;Acc:ZDB-GENE-030131-6690]
60. igf2r ENSDARG00000006094 1578 0.803 - - - - - 0.803 - - - insulin-like growth factor 2 receptor [Source:ZFIN;Acc:ZDB-GENE-041014-300]
61. slc6a1a ENSDARG00000045944 260 0.802 - - - - - - 0.802 - - solute carrier family 6 (neurotransmitter transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-060519-23]
62. aatkb ENSDARG00000104442 392 0.802 - - - - - - 0.802 - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
63. CCDC137 ENSDARG00000104024, ENSDARG00000110733 1855 0.801 - 0.801 - - - - - - - coiled-coil domain containing 137 [Source:ZFIN;Acc:ZDB-GENE-060929-1206]
64. khsrp ENSDARG00000026489 15738 0.801 - - - - - - 0.801 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
65. ABTB1 ENSDARG00000063354 383 0.8 - - - - - 0.800 - - - ankyrin repeat and BTB (POZ) domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-141212-241]
66. plch2a ENSDARG00000059960 222 0.799 - - - - - 0.799 - - - phospholipase C, eta 2a [Source:ZFIN;Acc:ZDB-GENE-030131-6367]
67. zbtb5 1484 0.799 - - - - - - 0.799 - - zinc finger and BTB domain containing 5
68. HAUS2 HAUS2 392 0.799 - 0.799 - - - - - - -
69. mettl3 ENSDARG00000012827 728 0.798 - - - - - - 0.798 - - methyltransferase like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9498]
70. arl16 ENSDARG00000059498, ENSDARG00000110386 229 0.798 - - - - - - 0.798 - - ADP-ribosylation factor-like 16 [Source:ZFIN;Acc:ZDB-GENE-070410-114]
71. ctnnb1 ENSDARG00000014571 12004 0.798 - - 0.798 - - - - - - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
72. plaa ENSDARG00000042728 1284 0.797 - 0.797 - - - - - - - phospholipase A2-activating protein [Source:ZFIN;Acc:ZDB-GENE-030826-13]
73. gtf2h2 ENSDARG00000016514 380 0.796 - 0.796 - - - - - - - general transcription factor IIH, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1959]
74. atad1a ENSDARG00000023267 155 0.796 - - - - - - 0.796 - - ATPase family, AAA domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030616-593]
75. cuedc1a ENSDARG00000068716 232 0.796 - - - - - - 0.796 - - CUE domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-061027-344]
76. ptprnb ENSDARG00000077047 2743 0.796 - - - - - - 0.796 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
77. si:dkey-117n7.2 ENSDARG00000093135 40 0.796 - 0.796 - - - - - - - si:dkey-117n7.2 [Source:ZFIN;Acc:ZDB-GENE-060503-49]
78. ttll7 ENSDARG00000062973 519 0.795 - 0.795 - - - - - - - tubulin tyrosine ligase-like family, member 7 [Source:ZFIN;Acc:ZDB-GENE-070112-2112]
79. lims1 ENSDARG00000026985 2072 0.795 - - - - - 0.795 - - - LIM and senescent cell antigen-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-050522-236]
80. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 0.795 - - - - - - 0.795 - - TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
81. pcnxl2 610 0.794 - - - - - - 0.794 - - pecanex-like 2 (Drosophila), transcript variant X2
82. cdh6 ENSDARG00000014522 5492 0.793 - - - - - 0.793 - - - cadherin 6 [Source:ZFIN;Acc:ZDB-GENE-050320-92]
83. prdm8 ENSDARG00000025017 370 0.792 - - - - - - 0.792 - - PR domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2747]
84. ldb2b ENSDARG00000034896, ENSDARG00000113987, ENSDARG00000116485 976 0.791 - - - - - - 0.791 - - LIM domain binding 2b [Source:ZFIN;Acc:ZDB-GENE-990415-137]
85. MKI67 ENSDARG00000091150 11038 0.791 - - - - - - 0.791 - - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
86. hoxc4a ENSDARG00000070338 1382 0.791 - 0.791 - - - - - - - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
87. dpf2 ENSDARG00000012219 666 0.791 - 0.791 - - - - - - - D4, zinc and double PHD fingers family 2 [Source:ZFIN;Acc:ZDB-GENE-041024-2]
88. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 0.791 - - - - - - 0.791 - - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
89. TMEM200C 172 0.79 - 0.790 - - - - - - - transmembrane protein 200C
90. wdr32 ENSDARG00000029600, ENSDARG00000110405 607 0.79 - - - - - - 0.790 - - WD repeat domain 32 [Source:ZFIN;Acc:ZDB-GENE-040426-2314]
91. hmg20a ENSDARG00000031198 1763 0.79 - - - - - - 0.790 - - high mobility group 20A [Source:ZFIN;Acc:ZDB-GENE-030131-5107]
92. rabep1 ENSDARG00000059600, ENSDARG00000110933 1003 0.79 - - - - - - 0.790 - - rabaptin, RAB GTPase binding effector protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-165]
93. atat1 ENSDARG00000004472 700 0.79 - - - - - - 0.790 - - alpha tubulin acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2120]
94. tmem53 ENSDARG00000038789 411 0.789 - 0.789 - - - - - - - transmembrane protein 53 [Source:ZFIN;Acc:ZDB-GENE-040718-384]
95. supt20 ENSDARG00000078658 713 0.789 - - - - - - 0.789 - - SPT20 homolog, SAGA complex component [Source:ZFIN;Acc:ZDB-GENE-091204-264]
96. ZNF784_3 ZNF784_3 44 0.789 - 0.789 - - - - - - -
97. hoxa3a ENSDARG00000103862 2239 0.788 - - - - - - 0.788 - - homeobox A3a [Source:ZFIN;Acc:ZDB-GENE-000823-3]
98. CCSAP CCSAP 147 0.788 - - - - - - 0.788 - -
99. NF1 NF1 62 0.788 - - - - - - 0.788 - -
100. ipo9 ENSDARG00000016753, ENSDARG00000113327 936 0.788 - - - - - - 0.788 - - importin 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2953]

There are 751 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA