Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lims2

Gene Name Gene ID Reads Annotation
lims2 ENSDARG00000014976 1248 LIM and senescent cell antigen-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-050522-56]










Genes with expression patterns similar to lims2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lims2 ENSDARG00000014976 1248 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM and senescent cell antigen-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-050522-56]
2. obsl1b ENSDARG00000077388 2511 2.938 - - - 0.727 - 0.730 0.755 0.726 - obscurin-like 1b [Source:ZFIN;Acc:ZDB-GENE-050809-29]
3. nexn ENSDARG00000057317 10972 2.807 - 0.971 - - - 0.932 0.904 - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
4. smtnl1 ENSDARG00000041257 7410 2.788 - 0.969 - - - 0.922 0.897 - - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
5. atp1b3b ENSDARG00000042837 5163 2.772 - 0.998 - - - 0.887 0.887 - - ATPase Na+/K+ transporting subunit beta 3b [Source:ZFIN;Acc:ZDB-GENE-001127-1]
6. zgc:92518 ENSDARG00000016343 3837 2.738 - 0.952 - - - 0.911 0.875 - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
7. ube2d3 ENSDARG00000038473 4096 2.52 - 0.983 - - - 0.798 0.739 - - ubiquitin-conjugating enzyme E2D 3 [Source:ZFIN;Acc:ZDB-GENE-030131-551]
8. zgc:158296 ENSDARG00000070923 3935 2.459 - - - - 0.737 0.855 0.867 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
9. cacna1sa ENSDARG00000029457 883 2.395 - - - 0.717 - 0.835 0.843 - - calcium channel, voltage-dependent, L type, alpha 1S subunit, a [Source:ZFIN;Acc:ZDB-GENE-090514-1]
10. ahsa1 ahsa1 2012 2.287 - - 0.767 - - 0.703 0.817 - -
11. tnnt3a ENSDARG00000030270 112506 2.277 - 0.821 - - - 0.731 0.725 - - troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
12. eif2s2 ENSDARG00000053047 15904 2.252 - 0.795 - - - 0.739 0.718 - - eukaryotic translation initiation factor 2, subunit 2 beta [Source:ZFIN;Acc:ZDB-GENE-030131-3085]
13. murca murca 6614 1.905 - 0.999 - - - 0.906 - - -
14. svila ENSDARG00000055075, ENSDARG00000110002, ENSDARG00000114888 4078 1.903 - 0.995 - - - - 0.908 - - supervillin a [Source:ZFIN;Acc:ZDB-GENE-990706-5]
15. myom1a ENSDARG00000061249 10230 1.851 - - - - - 0.963 0.888 - - myomesin 1a (skelemin) [Source:ZFIN;Acc:ZDB-GENE-030131-2856]
16. tgm2a ENSDARG00000070157 4516 1.843 - - - - - 0.943 0.900 - - transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
17. tmem182 tmem182 12589 1.838 - - - - - 0.937 0.901 - -
18. pfkmb ENSDARG00000060797, ENSDARG00000109412, ENSDARG00000109653, ENSDARG00000115422 3323 1.837 - - - - - 0.923 0.914 - - phosphofructokinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-081114-1]
19. ldb3a ENSDARG00000056322, ENSDARG00000116388 2569 1.821 - - - - - 0.911 0.910 - - LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]
20. klhl41b ENSDARG00000006757 10762 1.817 - - - - - 0.920 0.897 - - kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
21. NRAP ENSDARG00000009341 3565 1.817 - - - - - 0.916 0.901 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
22. ATP5J_2 ATP5J_2 2381 1.814 - - - - - 0.912 0.902 - -
23. SERP1 ENSDARG00000076223 2528 1.805 - 0.999 - - - 0.806 - - - stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]
24. cnbpb ENSDARG00000070922 14606 1.803 - 0.959 - - - - 0.844 - - CCHC-type zinc finger, nucleic acid binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-7782]
25. smpx ENSDARG00000045302 2175 1.803 - - - - - 0.905 0.898 - - small muscle protein X-linked [Source:ZFIN;Acc:ZDB-GENE-040704-24]
26. actc1a ENSDARG00000042535, ENSDARG00000076126, ENSDARG00000116925 6499 1.797 - 0.878 - - - - 0.919 - - actin, alpha, cardiac muscle 1a [Source:ZFIN;Acc:ZDB-GENE-040520-4]
27. nid1a ENSDARG00000068710 3948 1.792 - - - - - 0.904 0.888 - - nidogen 1a [Source:ZFIN;Acc:ZDB-GENE-050302-58]
28. CHCHD3 CHCHD3 1425 1.792 - 0.999 - - - - 0.793 - -
29. myod1 ENSDARG00000030110 6019 1.784 - - - - - 0.928 0.856 - - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
30. gulp1a ENSDARG00000001733 1206 1.78 - 0.999 - - - - 0.781 - - GULP, engulfment adaptor PTB domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030616-21]
31. eif2a ENSDARG00000101061 3800 1.777 - 0.966 - - - 0.811 - - - eukaryotic translation initiation factor 2A [Source:ZFIN;Acc:ZDB-GENE-050626-52]
32. kbtbd12 ENSDARG00000001882 1196 1.773 - - - - - 0.864 0.909 - - kelch repeat and BTB (POZ) domain containing 12 [Source:ZFIN;Acc:ZDB-GENE-050904-1]
33. dhrs7c dhrs7c 1173 1.773 - - - - - 0.885 0.888 - -
34. CR847973.1 ENSDARG00000115516 8754 1.766 - - - - - 0.905 0.861 - -
35. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 1.759 - - - - - 0.893 0.866 - - fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
36. stac3 ENSDARG00000098883 1765 1.754 - - - - - 0.898 0.856 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
37. aars ENSDARG00000069142, ENSDARG00000113882 10348 1.753 - 0.935 - - - - 0.818 - - alanyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-3663]
38. ppapdc3 ppapdc3 4924 1.753 - - - - - 0.854 0.899 - -
39. cox7c ENSDARG00000104537 12169 1.752 - 0.984 - - - 0.768 - - - cytochrome c oxidase subunit 7C [Source:ZFIN;Acc:ZDB-GENE-030131-8062]
40. pabpc4 ENSDARG00000059259, ENSDARG00000111312 2392 1.751 - - - - - 0.837 0.914 - - poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
41. si:ch211-152c2.3 ENSDARG00000045898 3448 1.751 - - - - - 0.826 0.925 - - si:ch211-152c2.3 [Source:ZFIN;Acc:ZDB-GENE-030131-9914]
42. PTPLA PTPLA 4044 1.75 - - - - - 0.890 0.860 - -
43. pdlim7 ENSDARG00000103854 465 1.749 - - - - - 0.814 0.935 - - PDZ and LIM domain 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2092]
44. smyd1a ENSDARG00000009280 1503 1.749 - - - - - 0.856 0.893 - - SET and MYND domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9825]
45. tomm34 ENSDARG00000001557 1874 1.747 - - - - - 0.920 0.827 - - translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
46. chrna1 ENSDARG00000009021 2931 1.746 - - - - - 0.918 0.828 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
47. sspn ENSDARG00000041747, ENSDARG00000114109, ENSDARG00000114643 1228 1.745 - - - - - 0.885 0.860 - - sarcospan (Kras oncogene-associated gene) [Source:ZFIN;Acc:ZDB-GENE-051127-43]
48. CR392006.1 CR392006.1 1401 1.738 - - - - - 0.820 0.918 - -
49. tnnt2e ENSDARG00000045822, ENSDARG00000109924 3288 1.734 - - - - - 0.851 0.883 - - troponin T2e, cardiac [Source:ZFIN;Acc:ZDB-GENE-041210-27]
50. DNAJA4 ENSDARG00000051762 5657 1.731 - - - - - 0.853 0.878 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
51. fbp2 ENSDARG00000012366 1042 1.731 - - - - - 0.859 0.872 - - fructose-1,6-bisphosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-040822-23]
52. vwde ENSDARG00000103443 5758 1.728 - - - - - 0.780 0.948 - - von Willebrand factor D and EGF domains [Source:ZFIN;Acc:ZDB-GENE-060929-1226]
53. phex ENSDARG00000062363 1413 1.727 - - - - - 0.815 0.912 - - phosphate regulating endopeptidase homolog, X-linked [Source:ZFIN;Acc:ZDB-GENE-030103-2]
54. TRIM63 TRIM63 1600 1.726 - - - - - 0.893 0.833 - -
55. tnnt2d ENSDARG00000002988 7590 1.726 - - - - - 0.815 0.911 - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
56. rp42-pen rp42-pen 3395 1.725 - - - - - 0.852 0.873 - -
57. klhl40a ENSDARG00000039052 2537 1.725 - - - - - 0.878 0.847 - - kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
58. si:ch211-255p10.3 ENSDARG00000096616 8336 1.724 - - - - - 0.919 0.805 - - si:ch211-255p10.3 [Source:ZFIN;Acc:ZDB-GENE-121214-339]
59. dub ENSDARG00000059774 1026 1.724 - 0.999 - - - - 0.725 - - duboraya [Source:ZFIN;Acc:ZDB-GENE-060825-81]
60. sptb ENSDARG00000030490 7128 1.723 - - - - - 0.804 0.919 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
61. tnnc1b ENSDARG00000037539 13945 1.721 - - - - - 0.813 0.908 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
62. larsb ENSDARG00000019280 3924 1.714 - - - - - 0.875 0.839 - - leucyl-tRNA synthetase b [Source:ZFIN;Acc:ZDB-GENE-030114-7]
63. FHOD3_1 FHOD3_1 983 1.712 - - - - - 0.882 0.830 - -
64. txnipb ENSDARG00000070000 2365 1.712 - - - - - 0.814 0.898 - - thioredoxin interacting protein b [Source:ZFIN;Acc:ZDB-GENE-040917-1]
65. gypc ENSDARG00000041546 1487 1.705 - - - - - 0.839 0.866 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
66. zgc:92113 1738 1.702 - - - - - 0.803 0.899 - - zgc:92113
67. ckmt2 ckmt2 768 1.693 - - - - - 0.798 0.895 - -
68. trim63 trim63 2437 1.691 - - - - - 0.838 0.853 - -
69. cyp1d1 ENSDARG00000035569 628 1.686 - - - - - 0.787 0.899 - - cytochrome P450, family 1, subfamily D, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-041114-179]
70. ccdc58 ENSDARG00000045351 972 1.674 - - - - - 0.891 0.783 - - coiled-coil domain containing 58 [Source:ZFIN;Acc:ZDB-GENE-040426-1780]
71. cap2 ENSDARG00000104478 3266 1.673 - - - - - 0.809 0.864 - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
72. rbm24a ENSDARG00000102995 5123 1.672 - - - - - 0.827 0.845 - - RNA binding motif protein 24a [Source:ZFIN;Acc:ZDB-GENE-040628-1]
73. lnpa ENSDARG00000063646, ENSDARG00000115902 2373 1.671 - - - - - 0.777 0.894 - - limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
74. hibadhb ENSDARG00000007959 4858 1.671 - 0.884 - - - 0.787 - - - 3-hydroxyisobutyrate dehydrogenase b [Source:ZFIN;Acc:ZDB-GENE-040426-1582]
75. ALDH1L2 ENSDARG00000070230 2550 1.671 - - - - - 0.828 0.843 - - aldehyde dehydrogenase 1 family, member L2 [Source:ZFIN;Acc:ZDB-GENE-100426-6]
76. hsp90aa1.1 ENSDARG00000010478 47784 1.669 - - - - - 0.798 0.871 - - heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
77. jph2 ENSDARG00000028625 6706 1.667 - - - - - 0.806 0.861 - - junctophilin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9848]
78. flncb ENSDARG00000018820 5595 1.666 - - - - - 0.868 0.798 - - filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
79. cdnf ENSDARG00000075501, ENSDARG00000111042, ENSDARG00000112793 647 1.664 - - - - - 0.833 0.831 - - cerebral dopamine neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-070410-37]
80. usp2a ENSDARG00000020107 2586 1.662 - - - - - 0.768 0.894 - - ubiquitin specific peptidase 2a [Source:ZFIN;Acc:ZDB-GENE-041212-59]
81. MUSTN1 MUSTN1 1882 1.66 - - - - - 0.736 0.924 - -
82. ryr3 ENSDARG00000071331 6795 1.66 - - - - - 0.811 0.849 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
83. trdn ENSDARG00000041779 4283 1.657 - - - - - 0.762 0.895 - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
84. tspan12 ENSDARG00000032389 419 1.655 - - - - - 0.794 0.861 - - tetraspanin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-1285]
85. PTGES3L PTGES3L 4801 1.655 - - - - - 0.856 0.799 - -
86. mafa ENSDARG00000015890 2140 1.654 - - - - - 0.863 0.791 - - v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog a (paralog a) [Source:ZFIN;Acc:ZDB-GENE-010605-2]
87. lgals2a ENSDARG00000054942 888 1.654 - - - - - 0.767 0.887 - - lectin, galactoside-binding, soluble, 2a [Source:ZFIN;Acc:ZDB-GENE-050318-2]
88. slc16a3 ENSDARG00000045051 818 1.652 - - - - - 0.831 0.821 - - solute carrier family 16 (monocarboxylate transporter), member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5487]
89. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 1.65 - - - - - 0.851 0.799 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
90. TENC1 TENC1 1729 1.65 - - - - - 0.791 0.859 - -
91. ITGB1BP2 ENSDARG00000030176 2472 1.649 - - - - - 0.853 0.796 - - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
92. parvb ENSDARG00000019117 1042 1.648 - - - - - 0.746 0.902 - - parvin, beta [Source:ZFIN;Acc:ZDB-GENE-030131-4411]
93. myhc4 ENSDARG00000035438 1322 1.647 - - - - - 0.720 0.927 - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
94. txlnbb ENSDARG00000076241 6396 1.647 - - - - - 0.816 0.831 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
95. bmpr1bb ENSDARG00000102742 1036 1.638 - - - - - 0.767 0.871 - - bone morphogenetic protein receptor, type IBb [Source:ZFIN;Acc:ZDB-GENE-090610-1]
96. chchd3 chchd3 4139 1.637 - - - - - 0.788 0.849 - -
97. acsl1 acsl1 4216 1.633 - - - - - 0.850 0.783 - -
98. cct2 ENSDARG00000087206, ENSDARG00000104674 19049 1.632 - 0.926 - - - 0.706 - - - chaperonin containing TCP1, subunit 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-020419-6]
99. cmya5 ENSDARG00000061379 1423 1.631 - - - - - 0.780 0.851 - - cardiomyopathy associated 5 [Source:ZFIN;Acc:ZDB-GENE-070630-1]
100. lrig1 ENSDARG00000075625 2027 1.629 - - - - - 0.817 0.812 - - leucine-rich repeats and immunoglobulin-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-031113-23]

There are 1055 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA