Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lims1

Gene Name Gene ID Reads Annotation
lims1 ENSDARG00000026985 2072 LIM and senescent cell antigen-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-050522-236]










Genes with expression patterns similar to lims1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lims1 ENSDARG00000026985 2072 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM and senescent cell antigen-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-050522-236]
2. gna12a ENSDARG00000025826 1769 2.356 - - - - - 0.803 0.759 - 0.794 guanine nucleotide binding protein (G protein) alpha 12a [Source:ZFIN;Acc:ZDB-GENE-050221-1]
3. asap2b ENSDARG00000019564 1660 2.277 - - - - - 0.705 0.788 - 0.784 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5060]
4. TMEM179B ENSDARG00000069495 1074 2.222 0.717 0.739 - - - 0.766 - - - transmembrane protein 179B [Source:ZFIN;Acc:ZDB-GENE-091204-145]
5. soga1 ENSDARG00000063075 1066 1.669 - 0.781 - - - 0.888 - - - suppressor of glucose, autophagy associated 1 [Source:ZFIN;Acc:ZDB-GENE-090313-188]
6. myh9a ENSDARG00000063295 27935 1.668 - - - - - - 0.806 - 0.862 myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
7. plcd1b ENSDARG00000034080 4074 1.662 - - - - - - 0.794 - 0.868 phospholipase C, delta 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9435]
8. mmp9 ENSDARG00000042816 298 1.658 - - - - - 0.841 - - 0.817 matrix metallopeptidase 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2132]
9. hgs ENSDARG00000020960 3574 1.651 - 0.801 - - - - 0.850 - - hepatocyte growth factor-regulated tyrosine kinase substrate [Source:ZFIN;Acc:ZDB-GENE-030131-6107]
10. anxa2a ENSDARG00000003216 10684 1.628 - - - - - - 0.732 - 0.896 annexin A2a [Source:ZFIN;Acc:ZDB-GENE-030131-4282]
11. vps29 ENSDARG00000069521 5599 1.627 - - - - - 0.791 0.836 - - vacuolar protein sorting 29 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-8764]
12. ctnna1 ENSDARG00000102441 7984 1.622 - 0.789 - - - - 0.833 - - catenin (cadherin-associated protein), alpha 1 [Source:ZFIN;Acc:ZDB-GENE-991207-24]
13. ctdsp2 ENSDARG00000036102, ENSDARG00000110420 4625 1.615 - - - - - - 0.850 - 0.765 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-184]
14. shc1 ENSDARG00000075437 3278 1.613 - 0.777 - - - - 0.836 - - SHC (Src homology 2 domain containing) transforming protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2538]
15. rrm2b ENSDARG00000033367, ENSDARG00000115899 2754 1.607 - - - - - 0.863 0.744 - - ribonucleotide reductase M2 b [Source:ZFIN;Acc:ZDB-GENE-030616-614]
16. cd2ap ENSDARG00000015224 2830 1.607 - - - - - 0.816 - - 0.791 CD2-associated protein [Source:ZFIN;Acc:ZDB-GENE-030131-8078]
17. BX004812.1 ENSDARG00000096968 5467 1.601 - - - - - 0.802 0.799 - -
18. msxa msxa 263 1.594 - - - - - 0.788 - - 0.806
19. lrrc1 ENSDARG00000102684 1054 1.593 - - - - - 0.806 0.787 - - leucine rich repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-050320-1]
20. tefa ENSDARG00000039117, ENSDARG00000109532 3065 1.593 0.834 - - - - - 0.759 - - thyrotrophic embryonic factor a [Source:ZFIN;Acc:ZDB-GENE-990415-264]
21. mpv17 ENSDARG00000032431 1225 1.592 - - - - - 0.796 - - 0.796 MpV17 mitochondrial inner membrane protein [Source:ZFIN;Acc:ZDB-GENE-040426-1168]
22. cdh6 ENSDARG00000014522 5492 1.591 - - - - - 0.845 0.746 - - cadherin 6 [Source:ZFIN;Acc:ZDB-GENE-050320-92]
23. sec61b ENSDARG00000076568 11859 1.587 - - - - - - 0.763 - 0.824 Sec61 translocon beta subunit [Source:ZFIN;Acc:ZDB-GENE-040718-260]
24. b3gnt2b ENSDARG00000091902 4125 1.582 - - - - - - 0.834 - 0.748 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2b [Source:ZFIN;Acc:ZDB-GENE-050913-158]
25. irf2bp2a ENSDARG00000004702 6719 1.575 - 0.793 - - - - 0.782 - - interferon regulatory factor 2 binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7809]
26. dsc2l ENSDARG00000039677 2747 1.57 - 0.814 - - - - 0.756 - - desmocollin 2 like [Source:ZFIN;Acc:ZDB-GENE-031116-55]
27. KRT18 ENSDARG00000018404, ENSDARG00000109528 6022 1.568 - 0.806 - - - - 0.762 - - keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
28. atp6v0ca ENSDARG00000057853 23277 1.564 - - - - - 0.702 0.862 - - ATPase H+ transporting V0 subunit ca [Source:ZFIN;Acc:ZDB-GENE-020419-23]
29. hagh ENSDARG00000025338 2911 1.561 - 0.708 - - - - 0.853 - - hydroxyacylglutathione hydrolase [Source:ZFIN;Acc:ZDB-GENE-030131-8921]
30. slc47a1 ENSDARG00000046012 1426 1.561 - - - - - 0.737 0.824 - - solute carrier family 47 (multidrug and toxin extrusion), member 1 [Source:ZFIN;Acc:ZDB-GENE-050327-20]
31. wu:fa03e10 2390 1.558 - - - - - 0.714 0.844 - - wu:fa03e10
32. mgst3 mgst3 3982 1.557 - - - - - 0.783 0.774 - -
33. ctps1a ENSDARG00000030700 3868 1.557 - - - - - 0.792 0.765 - - CTP synthase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-808]
34. vps28 ENSDARG00000103203 4991 1.556 - - - - - - 0.788 - 0.768 vacuolar protein sorting 28 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1527]
35. coro1ca ENSDARG00000035598 9278 1.554 - - - - - - 0.736 - 0.818 coronin, actin binding protein, 1Ca [Source:ZFIN;Acc:ZDB-GENE-030114-6]
36. sphk2 ENSDARG00000069893 1518 1.553 - 0.702 - - - 0.851 - - - sphingosine kinase 2 [Source:ZFIN;Acc:ZDB-GENE-100922-225]
37. KDELR3 ENSDARG00000040912 109 1.552 0.829 0.723 - - - - - - - KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1387]
38. etv5b ENSDARG00000044511, ENSDARG00000113744 1967 1.552 - - - - - 0.771 0.781 - - ets variant 5b [Source:ZFIN;Acc:ZDB-GENE-991228-4]
39. rhbdf1 rhbdf1 1608 1.55 - - - - - 0.794 0.756 - -
40. ube2nb ENSDARG00000045877 4583 1.549 - 0.719 - - - - 0.830 - - ubiquitin-conjugating enzyme E2Nb [Source:ZFIN;Acc:ZDB-GENE-040426-1291]
41. pptc7a ENSDARG00000011122 739 1.545 - 0.796 - - - 0.749 - - - PTC7 protein phosphatase homolog a [Source:ZFIN;Acc:ZDB-GENE-041114-74]
42. stxbp2 ENSDARG00000007603 1646 1.544 - 0.757 - - - - - - 0.787 syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
43. cldnb ENSDARG00000009544 6036 1.543 - - - - - - 0.801 - 0.742 claudin b [Source:ZFIN;Acc:ZDB-GENE-010328-2]
44. ap1s3b ENSDARG00000027966 1064 1.543 0.803 - - - - 0.740 - - - adaptor related protein complex 1 subunit sigma 3b [Source:ZFIN;Acc:ZDB-GENE-040912-62]
45. sort1b ENSDARG00000056252 2652 1.541 - - - - - - 0.769 - 0.772 sortilin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-7447]
46. amotl2a ENSDARG00000061923 4713 1.534 - 0.703 - - - - 0.831 - - angiomotin like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-9770]
47. ca15a ENSDARG00000015654 2657 1.533 - - - - - 0.792 0.741 - - carbonic anhydrase XVa [Source:ZFIN;Acc:ZDB-GENE-070424-7]
48. tfap2a ENSDARG00000059279 3741 1.533 - - - - - 0.824 0.709 - - transcription factor AP-2 alpha [Source:ZFIN;Acc:ZDB-GENE-011212-6]
49. hspb1 ENSDARG00000041065 13534 1.532 - - - - - 0.744 0.788 - - heat shock protein, alpha-crystallin-related, 1 [Source:ZFIN;Acc:ZDB-GENE-030326-4]
50. elovl7a ENSDARG00000069279, ENSDARG00000114975 1963 1.532 - - - - - - 0.777 - 0.755 ELOVL fatty acid elongase 7a [Source:ZFIN;Acc:ZDB-GENE-030131-6149]
51. grb2b ENSDARG00000038059 9050 1.53 - - - - - 0.726 0.804 - - growth factor receptor-bound protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1975]
52. gorasp1 gorasp1 3075 1.529 - - - - - - 0.721 - 0.808
53. SVIL SVIL 2589 1.52 - - - - - - 0.770 - 0.750
54. klf3 ENSDARG00000015495, ENSDARG00000114143 1640 1.519 - - - - - 0.774 0.745 - - Kruppel-like factor 3 (basic) [Source:ZFIN;Acc:ZDB-GENE-011116-1]
55. ppp4r2b ENSDARG00000053447 2506 1.519 - 0.804 - - - - - - 0.715 protein phosphatase 4, regulatory subunit 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3008]
56. ino80c ENSDARG00000055719 1512 1.519 - 0.742 - - - 0.777 - - - INO80 complex subunit C [Source:ZFIN;Acc:ZDB-GENE-040625-97]
57. anxa4 ENSDARG00000036456 3332 1.517 - 0.728 - - - - - - 0.789 annexin A4 [Source:ZFIN;Acc:ZDB-GENE-030707-1]
58. pcl pcl 2862 1.517 - - - - - - 0.745 - 0.772
59. ppcdc ENSDARG00000033020, ENSDARG00000109858 563 1.516 0.712 - - - - 0.804 - - - phosphopantothenoylcysteine decarboxylase [Source:ZFIN;Acc:ZDB-GENE-040426-1749]
60. cramp1l cramp1l 700 1.516 - 0.722 - - - 0.794 - - -
61. adcy7 ENSDARG00000060070 1878 1.515 - 0.809 - - - - 0.706 - - adenylate cyclase 7 [Source:ZFIN;Acc:ZDB-GENE-040713-1]
62. copa ENSDARG00000004173 3977 1.513 - 0.767 - - - - 0.746 - - coatomer protein complex, subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020905-2]
63. CABZ01101003.1 CABZ01101003.1 858 1.512 - - - - - - 0.707 - 0.805
64. aim1a 2981 1.511 - - - - - 0.784 0.727 - - crystallin beta-gamma domain containing 1a, transcript variant X1
65. zgc:194887 ENSDARG00000098586 437 1.509 - - - - - 0.790 0.719 - - zgc:194887 [Source:ZFIN;Acc:ZDB-GENE-081022-162]
66. hexb ENSDARG00000034368 3505 1.508 - - - - - 0.803 0.705 - - hexosaminidase B (beta polypeptide) [Source:ZFIN;Acc:ZDB-GENE-030131-2333]
67. LDLR LDLR 838 1.508 - - - - - 0.709 - - 0.799
68. tbcc ENSDARG00000022918 386 1.504 0.763 - - - - 0.741 - - - tubulin folding cofactor C [Source:ZFIN;Acc:ZDB-GENE-041008-103]
69. nedd8 ENSDARG00000007989 3896 1.502 - - - - - - 0.708 - 0.794 neural precursor cell expressed, developmentally down-regulated 8 [Source:ZFIN;Acc:ZDB-GENE-030616-588]
70. grip1 ENSDARG00000015053 1275 1.502 0.713 0.789 - - - - - - - glutamate receptor interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-041210-125]
71. gpd1b ENSDARG00000043180 6002 1.502 - - - - - 0.722 0.780 - - glycerol-3-phosphate dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-3906]
72. gnai1 ENSDARG00000021647 1548 1.5 - 0.761 - - - - 0.739 - - guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1310]
73. dpydb ENSDARG00000010267 831 1.497 0.726 - - - - - 0.771 - - dihydropyrimidine dehydrogenase b [Source:ZFIN;Acc:ZDB-GENE-040426-2459]
74. gstt1a ENSDARG00000042428, ENSDARG00000110738 3098 1.497 - - - - - - 0.760 - 0.737 glutathione S-transferase theta 1a [Source:ZFIN;Acc:ZDB-GENE-031001-13]
75. tmed1a ENSDARG00000031325 1936 1.496 - - - - - 0.775 0.721 - - transmembrane p24 trafficking protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-229]
76. tcn2l tcn2l 2428 1.495 - - - - - 0.726 0.769 - -
77. jak2b ENSDARG00000018882 1141 1.494 - 0.719 - - - - 0.775 - - Janus kinase 2b [Source:ZFIN;Acc:ZDB-GENE-980526-123]
78. id3 ENSDARG00000054823 3484 1.494 - - - - - - 0.764 - 0.730 inhibitor of DNA binding 3 [Source:ZFIN;Acc:ZDB-GENE-020515-1]
79. bmp2b ENSDARG00000041430, ENSDARG00000115191 894 1.494 - - - - - - 0.718 - 0.776 bone morphogenetic protein 2b [Source:ZFIN;Acc:ZDB-GENE-980526-474]
80. ythdf1 ENSDARG00000016447 3391 1.493 - 0.779 - - - - 0.714 - - YTH N(6)-methyladenosine RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2786]
81. daam1a ENSDARG00000015059 1460 1.493 - - - - - 0.717 - - 0.776 dishevelled associated activator of morphogenesis 1a [Source:ZFIN;Acc:ZDB-GENE-030911-6]
82. col12a1a ENSDARG00000078322 1833 1.492 - - - - - 0.776 0.716 - - collagen, type XII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090728-1]
83. col6a6 col6a6 1165 1.492 - 0.707 - - - - 0.785 - -
84. mospd2 ENSDARG00000026024 854 1.489 - 0.784 - - - - 0.705 - - motile sperm domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-041114-1]
85. znf598 ENSDARG00000014945 1838 1.489 - 0.757 - - - - 0.732 - - zinc finger protein 598 [Source:ZFIN;Acc:ZDB-GENE-060602-3]
86. ppp1r2 ENSDARG00000054007 1585 1.489 - 0.750 - - - 0.739 - - - protein phosphatase 1, regulatory (inhibitor) subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1814]
87. ephb4a ENSDARG00000100725 1749 1.487 - 0.709 - - - - - - 0.778 eph receptor B4a [Source:ZFIN;Acc:ZDB-GENE-990415-62]
88. rpz5 ENSDARG00000075718 1703 1.486 - - - - - 0.729 - - 0.757 rapunzel 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4678]
89. aip ENSDARG00000104437 3574 1.486 - 0.739 - - - - 0.747 - - aryl hydrocarbon receptor interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-6735]
90. adob ENSDARG00000053571 846 1.485 - - - - - 0.738 0.747 - - 2-aminoethanethiol (cysteamine) dioxygenase b [Source:ZFIN;Acc:ZDB-GENE-040426-2267]
91. srgap2a srgap2a 7197 1.482 - - - - - - 0.738 - 0.744
92. cyb5b ENSDARG00000099774 1224 1.479 - 0.703 - - - - 0.776 - - cytochrome b5 type B [Source:ZFIN;Acc:ZDB-GENE-040426-2614]
93. spns1 ENSDARG00000011925, ENSDARG00000111727 3126 1.478 - - - - - 0.701 0.777 - - spinster homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-020228-1]
94. cryl1 ENSDARG00000003675, ENSDARG00000112171 1496 1.477 - - - - - 0.750 0.727 - - crystallin, lambda 1 [Source:ZFIN;Acc:ZDB-GENE-060810-7]
95. zgc:193711 ENSDARG00000101901 503 1.474 - - - - - 0.758 0.716 - - zgc:193711 [Source:ZFIN;Acc:ZDB-GENE-081022-34]
96. hat1 ENSDARG00000034916 5712 1.474 - - - - - 0.735 0.739 - - histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
97. cpvl ENSDARG00000056480 2115 1.471 - - - - - 0.707 0.764 - - carboxypeptidase, vitellogenic-like [Source:ZFIN;Acc:ZDB-GENE-031219-2]
98. lamtor3 ENSDARG00000057075 2282 1.466 - - - - - 0.722 0.744 - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:ZFIN;Acc:ZDB-GENE-050522-345]
99. cyp2v1 ENSDARG00000018485 694 1.466 - - - - - 0.718 0.748 - - cytochrome P450, family 2, subfamily V, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040912-139]
100. PCOLCE_1 PCOLCE_1 2148 1.465 - - - - - 0.717 0.748 - -

There are 1594 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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