Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for limk1a

Gene Name Gene ID Reads Annotation
limk1a ENSDARG00000103467 97 LIM domain kinase 1a [Source:ZFIN;Acc:ZDB-GENE-061212-3]










Genes with expression patterns similar to limk1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. limk1a ENSDARG00000103467 97 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM domain kinase 1a [Source:ZFIN;Acc:ZDB-GENE-061212-3]
2. npb ENSDARG00000078828 230 2.341 0.703 0.806 - - - 0.832 - - - neuropeptide B [Source:ZFIN;Acc:ZDB-GENE-040107-40]
3. TTBK1 TTBK1 120 1.868 - 0.921 - - - - 0.947 - -
4. KBTBD13 ENSDARG00000076449 10 1.855 - 0.921 - - - - 0.934 - - kelch repeat and BTB (POZ) domain containing 13 [Source:ZFIN;Acc:ZDB-GENE-140106-122]
5. prkcba ENSDARG00000008723, ENSDARG00000116813 30 1.852 - 0.921 - - - - 0.931 - - protein kinase C, beta a [Source:ZFIN;Acc:ZDB-GENE-040426-1354]
6. CR936975.1 ENSDARG00000096862 22 1.848 - 0.921 - - - 0.927 - - -
7. si:ch211-120c15.3 ENSDARG00000101807 19 1.846 0.925 0.921 - - - - - - - si:ch211-120c15.3 [Source:ZFIN;Acc:ZDB-GENE-110913-99]
8. CR848836.6 CR848836.6 93 1.833 0.912 0.921 - - - - - - -
9. mkks ENSDARG00000016139 70 1.833 0.912 0.921 - - - - - - - McKusick-Kaufman syndrome [Source:ZFIN;Acc:ZDB-GENE-040426-757]
10. zgc:110434_1 30 1.819 0.912 - - - - - 0.907 - - zgc:110434
11. BX088711.1 BX088711.1 125 1.79 - 0.865 - - - - 0.925 - -
12. lrrn3 lrrn3 137 1.768 0.847 0.921 - - - - - - -
13. trim35-27 ENSDARG00000035009 62 1.763 - 0.921 - - - 0.842 - - - tripartite motif containing 35-27 [Source:ZFIN;Acc:ZDB-GENE-030131-6185]
14. si:dkey-177p2.18 ENSDARG00000091633 91 1.751 0.889 - - - - - 0.862 - - si:dkey-177p2.18 [Source:ZFIN;Acc:ZDB-GENE-130603-12]
15. MPPED1 ENSDARG00000088181 117 1.732 0.798 - - - - - 0.934 - - metallophosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-111104-1]
16. si:dkey-92j12.6 211 1.729 0.869 0.860 - - - - - - - si:dkey-92j12.6
17. ncam2 ENSDARG00000017466 175 1.722 0.801 0.921 - - - - - - - neural cell adhesion molecule 2 [Source:ZFIN;Acc:ZDB-GENE-010822-1]
18. polg ENSDARG00000060951 33 1.722 0.801 0.921 - - - - - - - polymerase (DNA directed), gamma [Source:ZFIN;Acc:ZDB-GENE-060303-1]
19. FP085391.2 FP085391.2 85 1.719 0.798 0.921 - - - - - - -
20. mlc1 ENSDARG00000063026 29 1.719 0.798 0.921 - - - - - - - megalencephalic leukoencephalopathy with subcortical cysts 1 [Source:ZFIN;Acc:ZDB-GENE-050419-145]
21. CU694319.1 CU694319.1 72 1.719 0.798 0.921 - - - - - - -
22. C25H12orf29 C25H12orf29 31 1.71 - 0.921 - - - 0.789 - - -
23. U11 U11 11 1.699 0.778 0.921 - - - - - - -
24. valopa ENSDARG00000021150 71 1.688 - 0.860 - - - 0.828 - - - vertebrate ancient long opsin a [Source:ZFIN;Acc:ZDB-GENE-000427-4]
25. twf1b ENSDARG00000011661 630 1.672 - - - - - 0.777 0.895 - - twinfilin actin-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040711-3]
26. dopey1 438 1.663 0.721 - - - - - 0.942 - - dopey family member 1, transcript variant X4
27. si:dkey-208k4.1 si:dkey-208k4.1 15 1.658 0.798 0.860 - - - - - - -
28. loxhd1a ENSDARG00000094738 7 1.638 - 0.921 0.717 - - - - - - lipoxygenase homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-091112-20]
29. alg10 ENSDARG00000053917 491 1.638 0.893 - - - - - 0.745 - - asparagine-linked glycosylation 10 [Source:ZFIN;Acc:ZDB-GENE-110310-8]
30. si:dkeyp-82a1.2 ENSDARG00000094192 2 1.637 - 0.921 - - - 0.716 - - - si:dkeyp-82a1.2 [Source:ZFIN;Acc:ZDB-GENE-081104-475]
31. si:ch211-195i24.1 si:ch211-195i24.1 10 1.637 - 0.921 - - - 0.716 - - -
32. sdccag3 239 1.629 0.798 0.831 - - - - - - - serologically defined colon cancer antigen 3, transcript variant X2
33. gria4a ENSDARG00000037496 88 1.629 0.708 0.921 - - - - - - - glutamate receptor, ionotropic, AMPA 4a [Source:ZFIN;Acc:ZDB-GENE-020125-7]
34. si:dkeyp-87e3.3 si:dkeyp-87e3.3 68 1.621 0.798 0.823 - - - - - - -
35. tdp1 ENSDARG00000073866 214 1.606 - 0.708 - - - - 0.898 - - tyrosyl-DNA phosphodiesterase 1 [Source:ZFIN;Acc:ZDB-GENE-090909-1]
36. MSANTD2 ENSDARG00000079474 121 1.596 - 0.809 - - - 0.787 - - - Myb/SANT DNA binding domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26266]
37. tmem53 ENSDARG00000038789 411 1.585 - 0.756 - - - - 0.829 - - transmembrane protein 53 [Source:ZFIN;Acc:ZDB-GENE-040718-384]
38. CR678040.1 CR678040.1 117 1.575 - 0.859 - - - 0.716 - - -
39. BX470254.1_1 ENSDARG00000097402 50 1.559 0.798 - - - - - 0.761 - -
40. ATP6AP1L_1 ATP6AP1L_1 508 1.546 - - - - - 0.723 0.823 - -
41. tagln3a ENSDARG00000079805 123 1.536 0.756 - - - - 0.780 - - - transgelin 3a [Source:ZFIN;Acc:ZDB-GENE-060531-53]
42. gabrb2 ENSDARG00000079586 33 1.534 0.798 - - - - 0.736 - - - gamma-aminobutyric acid (GABA) A receptor, beta 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8196]
43. rad18 ENSDARG00000027938 574 1.531 - 0.758 - - - - 0.773 - - RAD18 E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-745]
44. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.521 0.798 - - - 0.723 - - - - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
45. nmu ENSDARG00000043299 67 1.517 0.801 - - - - 0.716 - - - neuromedin U [Source:ZFIN;Acc:ZDB-GENE-041001-111]
46. si:dkey-122c11.4 si:dkey-122c11.4 13 1.514 0.798 - - - - 0.716 - - -
47. mettl10 131 1.514 0.706 0.808 - - - - - - - methyltransferase like 10, transcript variant X1
48. sez6l ENSDARG00000100594 35 1.506 0.798 - - - - 0.708 - - - seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
49. si:ch73-269m14.3 ENSDARG00000096305 28 1.505 0.798 - 0.707 - - - - - - si:ch73-269m14.3 [Source:ZFIN;Acc:ZDB-GENE-120215-13]
50. hmx3 hmx3 510 1.439 - - - - - 0.721 0.718 - -
51. si:ch211-214c7.4 ENSDARG00000069595 56 1.422 - - 0.706 - - 0.716 - - - si:ch211-214c7.4 [Source:ZFIN;Acc:ZDB-GENE-030131-6275]
52. syt9b ENSDARG00000029239 31 1.422 0.706 - - - - 0.716 - - - synaptotagmin IXb [Source:ZFIN;Acc:ZDB-GENE-040822-6]
53. phf19 ENSDARG00000078050 117 0.992 - 0.992 - - - - - - - PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
54. SLC15A5 ENSDARG00000089974 18 0.987 - 0.987 - - - - - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
55. slitrk2 ENSDARG00000006636 40 0.972 - - - - - 0.972 - - - SLIT and NTRK-like family, member 2 [Source:ZFIN;Acc:ZDB-GENE-080327-7]
56. asap2a ENSDARG00000010181 384 0.968 - - - - - - 0.968 - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2a [Source:ZFIN;Acc:ZDB-GENE-041210-256]
57. ndel1a ENSDARG00000010953 292 0.966 - 0.966 - - - - - - - nudE neurodevelopment protein 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040115-2]
58. si:ch211-194k22.8 ENSDARG00000096711 1318 0.963 - - - - - - 0.963 - - si:ch211-194k22.8 [Source:ZFIN;Acc:ZDB-GENE-030131-1820]
59. p4ha1a_1 ENSDARG00000033537, ENSDARG00000114754 36 0.963 - 0.963 - - - - - - - prolyl 4-hydroxylase, alpha polypeptide I a [Source:ZFIN;Acc:ZDB-GENE-040724-91]
60. smg8 ENSDARG00000061378 1164 0.962 - - - - - - 0.962 - - SMG8 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-091204-279]
61. ulk4 ENSDARG00000004176 85 0.96 - - - - - - 0.960 - - unc-51 like kinase 4 [Source:ZFIN;Acc:ZDB-GENE-100922-243]
62. rbm5 ENSDARG00000098280 396 0.959 - - - - - - 0.959 - - RNA binding motif protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-3022]
63. inadl 80 0.959 - - - - - - 0.959 - - InaD-like (Drosophila), transcript variant X4
64. si:ch211-207m11.3 si:ch211-207m11.3 401 0.958 - - - - - - 0.958 - -
65. dars2 ENSDARG00000060861 137 0.957 - - - - - - 0.957 - - aspartyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-070912-443]
66. pdpk1a ENSDARG00000062304 213 0.955 - - - - - - 0.955 - - 3-phosphoinositide dependent protein kinase 1a [Source:ZFIN;Acc:ZDB-GENE-061013-109]
67. spsb3a ENSDARG00000077737 527 0.955 - - - - - - 0.955 - - splA/ryanodine receptor domain and SOCS box containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-4182]
68. ccdc85a ENSDARG00000039497 24 0.953 - 0.953 - - - - - - - coiled-coil domain containing 85A [Source:ZFIN;Acc:ZDB-GENE-080220-55]
69. NARS2 ENSDARG00000098441 57 0.953 - 0.953 - - - - - - - asparaginyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-060929-596]
70. ankef1a ENSDARG00000019135 23 0.953 - 0.953 - - - - - - - ankyrin repeat and EF-hand domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-196]
71. si:ch211-135f11.1 166 0.953 - - - - - - 0.953 - - si:ch211-135f11.1, transcript variant X3
72. vgf ENSDARG00000105529 247 0.953 - 0.953 - - - - - - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
73. nudt17 ENSDARG00000008014 479 0.952 - - - - - - 0.952 - - nudix (nucleoside diphosphate linked moiety X)-type motif 17 [Source:ZFIN;Acc:ZDB-GENE-050913-50]
74. extl2 ENSDARG00000063191 118 0.952 - - - - - - 0.952 - - exostosin-like glycosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-060929-1122]
75. otx2 766 0.951 - - - - - - 0.951 - - orthodenticle homeobox 2, transcript variant X2
76. si:ch211-113a14.12 ENSDARG00000077456 1004 0.951 - - - - - - 0.951 - - si:ch211-113a14.12 [Source:ZFIN;Acc:ZDB-GENE-121214-99]
77. sema3c ENSDARG00000034300 881 0.951 - 0.951 - - - - - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:ZFIN;Acc:ZDB-GENE-050513-5]
78. si:rp71-3c13.3 si:rp71-3c13.3 128 0.949 - - - - - - 0.949 - -
79. otpb ENSDARG00000058379 1143 0.948 - - - - - - 0.948 - - orthopedia homeobox b [Source:ZFIN;Acc:ZDB-GENE-990708-7]
80. pde6a ENSDARG00000000380 40 0.948 - 0.948 - - - - - - - phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
81. CR383676.3_2 CR383676.3_2 9 0.948 - 0.948 - - - - - - -
82. TNIP2 ENSDARG00000074501 35 0.948 - 0.948 - - - - - - - TNFAIP3 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-120913-2]
83. si:ch211-174j14.2 ENSDARG00000093015 111 0.948 - - - - - - 0.948 - - si:ch211-174j14.2 [Source:ZFIN;Acc:ZDB-GENE-050419-63]
84. ift57 ENSDARG00000021022 288 0.947 - - - - - - 0.947 - - intraflagellar transport 57 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-040614-1]
85. si:dkeyp-69c1.9 ENSDARG00000091888 39 0.947 - 0.947 - - - - - - - si:dkeyp-69c1.9 [Source:ZFIN;Acc:ZDB-GENE-030131-1774]
86. elovl2 ENSDARG00000045414 119 0.947 - 0.947 - - - - - - - ELOVL fatty acid elongase 2 [Source:ZFIN;Acc:ZDB-GENE-060421-5612]
87. ttll6 ENSDARG00000054023, ENSDARG00000109623 147 0.946 - 0.946 - - - - - - - tubulin tyrosine ligase-like family, member 6 [Source:ZFIN;Acc:ZDB-GENE-080107-1]
88. aldh16a1 ENSDARG00000037935 617 0.946 - - - - - - 0.946 - - aldehyde dehydrogenase 16 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-070112-2062]
89. TRHDE_1 TRHDE_1 102 0.945 - - - - - - 0.945 - -
90. CU681846.1 CU681846.1 86 0.944 - - - - - - 0.944 - -
91. CT030012.1 ENSDARG00000105611 154 0.944 - - - - - - 0.944 - -
92. TIMM22 ENSDARG00000091413 957 0.944 - - - - - - 0.944 - - translocase of inner mitochondrial membrane 22 [Source:HGNC Symbol;Acc:HGNC:17317]
93. tctex1d2 ENSDARG00000054255 320 0.943 - - - - - - 0.943 - - Tctex1 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-081104-219]
94. GSG2 GSG2 1162 0.943 - - - - - - 0.943 - -
95. uspl1 ENSDARG00000034825, ENSDARG00000109866 457 0.942 - - - - - - 0.942 - - ubiquitin specific peptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-040930-7]
96. ncbp2 ENSDARG00000014898 232 0.941 - - - - - - 0.941 - - nuclear cap binding protein subunit 2 [Source:ZFIN;Acc:ZDB-GENE-020419-31]
97. HYKK HYKK 261 0.941 - - - - - - 0.941 - -
98. CENPT CENPT 330 0.941 - - - - - - 0.941 - -
99. BX465851.1 BX465851.1 237 0.941 - - - - - - 0.941 - -
100. si:dkey-16n15.3 223 0.941 - - - - - - 0.941 - - si:dkey-16n15.3

There are 1539 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA