Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for limch1a

Gene Name Gene ID Reads Annotation
limch1a ENSDARG00000074275 2981 LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]










Genes with expression patterns similar to limch1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. limch1a ENSDARG00000074275 2981 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]
2. cacng1 cacng1 3118 4.844 0.828 0.910 0.701 0.730 - 0.778 0.897 - -
3. txlnbb ENSDARG00000076241 6396 4.237 0.761 0.939 0.749 - - 0.872 0.916 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
4. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 4.159 0.830 0.893 0.704 - - 0.830 0.902 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
5. chrna1 ENSDARG00000009021 2931 4.08 0.857 0.848 - - - 0.718 0.951 - 0.706 cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
6. sucla2 ENSDARG00000005359 5992 3.884 0.801 0.850 - - 0.726 0.775 - - 0.732 succinate-CoA ligase, ADP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1963]
7. ryr3 ENSDARG00000071331 6795 3.499 0.802 0.862 - - - 0.905 0.930 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
8. myod1 ENSDARG00000030110 6019 3.46 0.837 0.827 - - - - 0.924 0.872 - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
9. klhl40a ENSDARG00000039052 2537 3.443 0.839 0.891 - - - 0.793 0.920 - - kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
10. fitm1 ENSDARG00000056464 1759 3.441 0.841 0.918 - - - 0.768 0.914 - - fat storage-inducing transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-050306-28]
11. MYOT ENSDARG00000076312 1791 3.441 0.858 0.844 - - - 0.830 0.909 - - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]
12. sh3bgr ENSDARG00000021633 3498 3.422 0.863 0.847 - - - 0.782 0.930 - - SH3 domain binding glutamate-rich protein [Source:ZFIN;Acc:ZDB-GENE-040801-27]
13. sptb ENSDARG00000030490 7128 3.421 0.752 0.954 - - - 0.787 0.928 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
14. flncb ENSDARG00000018820 5595 3.405 0.843 - - 0.837 - 0.811 0.914 - - filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
15. PTGES3L PTGES3L 4801 3.404 0.876 - - - - 0.834 0.957 - 0.737
16. alpk3a ENSDARG00000078989 1992 3.403 0.751 0.947 - - - 0.829 0.876 - - alpha-kinase 3a [Source:ZFIN;Acc:ZDB-GENE-050419-48]
17. myhc4 ENSDARG00000035438 1322 3.395 0.746 0.845 - - - 0.914 0.890 - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
18. trdn ENSDARG00000041779 4283 3.392 0.911 0.834 - - - 0.742 0.905 - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
19. vwde ENSDARG00000103443 5758 3.376 0.780 0.939 - - - 0.809 0.848 - - von Willebrand factor D and EGF domains [Source:ZFIN;Acc:ZDB-GENE-060929-1226]
20. nexn ENSDARG00000057317 10972 3.374 0.922 - 0.733 - - 0.799 0.920 - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
21. tnnc1b ENSDARG00000037539 13945 3.362 - 0.933 0.758 - - 0.775 0.896 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
22. gypc ENSDARG00000041546 1487 3.361 0.804 0.906 - - - 0.745 0.906 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
23. myoz2b ENSDARG00000037266 2139 3.354 0.810 0.868 - - 0.782 - 0.894 - - myozenin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1853]
24. xirp2a ENSDARG00000071113 7113 3.34 0.858 0.813 - - - - 0.905 - 0.764 xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
25. tmx2a ENSDARG00000079122, ENSDARG00000109756 1156 3.339 0.825 - 0.792 - - 0.793 0.929 - - thioredoxin-related transmembrane protein 2a [Source:ZFIN;Acc:ZDB-GENE-050208-95]
26. EHBP1L1 EHBP1L1 2500 3.332 0.799 0.824 - - - 0.772 0.937 - -
27. ppapdc3 ppapdc3 4924 3.316 0.843 - 0.766 - - 0.804 0.903 - -
28. alpk2 ENSDARG00000079637 1483 3.276 0.852 0.801 - - - 0.717 0.906 - - alpha-kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1868]
29. TENC1 TENC1 1729 3.274 0.801 0.825 - - - 0.769 0.879 - -
30. TRIM63 TRIM63 1600 3.273 0.795 0.808 - - - 0.750 0.920 - -
31. mir133b_1 671 3.255 0.843 0.845 - - - 0.815 0.752 - - microRNA 133b
32. akap6 ENSDARG00000077295 1382 3.252 0.839 0.806 - - - - 0.862 - 0.745 A kinase (PRKA) anchor protein 6 [Source:ZFIN;Acc:ZDB-GENE-120207-2]
33. FHOD3_1 FHOD3_1 983 3.252 0.779 0.862 - - - 0.756 0.855 - -
34. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 3.233 0.730 0.845 - - - 0.827 0.831 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
35. stac3 ENSDARG00000098883 1765 3.228 0.828 0.831 - - - 0.725 0.844 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
36. srpk3 ENSDARG00000005916 1546 3.224 0.741 0.880 0.739 - - - 0.864 - - SRSF protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-101025-2]
37. ldb3a ENSDARG00000056322, ENSDARG00000116388 2569 3.201 0.759 0.779 - - - 0.742 0.921 - - LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]
38. NRAP ENSDARG00000009341 3565 3.196 0.716 0.858 - - - 0.710 0.912 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
39. tnc ENSDARG00000021948, ENSDARG00000113518 12162 3.189 0.820 0.805 - - - - 0.784 0.780 - tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
40. kcnma1a ENSDARG00000079840 2584 3.183 0.805 0.776 - - - 0.724 0.878 - - potassium large conductance calcium-activated channel, subfamily M, alpha member 1a [Source:ZFIN;Acc:ZDB-GENE-070202-9]
41. cap2 ENSDARG00000104478 3266 3.177 0.806 0.747 - - - 0.703 0.921 - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
42. CR847973.1 ENSDARG00000115516 8754 3.17 0.761 0.742 - - - 0.765 0.902 - -
43. anxa6 ENSDARG00000013335 3588 3.153 - - 0.706 - 0.764 0.778 0.905 - - annexin A6 [Source:ZFIN;Acc:ZDB-GENE-030707-3]
44. PTP4A3 ENSDARG00000039997 3814 3.14 0.805 0.824 - - - 0.731 0.780 - - protein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
45. DUSP27 ENSDARG00000099889 1197 3.137 0.823 0.792 - - - 0.708 0.814 - - dual specificity phosphatase 27 [Source:ZFIN;Acc:ZDB-GENE-140513-1]
46. aqp4 ENSDARG00000010565 624 3.124 0.733 0.792 - - - 0.754 0.845 - - aquaporin 4 [Source:ZFIN;Acc:ZDB-GENE-040724-152]
47. cyp4t8 ENSDARG00000004964, ENSDARG00000116412 1111 3.104 0.715 0.852 0.757 - - - 0.780 - - cytochrome P450, family 4, subfamily T, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-031219-3]
48. pi15a ENSDARG00000045378 2361 3.092 0.778 0.775 - - - 0.768 0.771 - - peptidase inhibitor 15a [Source:ZFIN;Acc:ZDB-GENE-040724-135]
49. asb5b ENSDARG00000053222 1207 3.013 0.711 0.792 - - - 0.713 0.797 - - ankyrin repeat and SOCS box containing 5b [Source:ZFIN;Acc:ZDB-GENE-050417-271]
50. mtdhb ENSDARG00000004939 1225 3.003 0.727 0.804 - - - 0.740 0.732 - - metadherin b [Source:ZFIN;Acc:ZDB-GENE-090929-2]
51. PTPLA PTPLA 4044 2.7 0.888 0.868 - - - - 0.944 - -
52. TMPO TMPO 3264 2.69 0.816 0.925 - - - - 0.949 - -
53. znf106a ENSDARG00000016651 6049 2.67 0.891 0.878 - - - - 0.901 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
54. pygma ENSDARG00000055518 15972 2.661 0.872 0.896 - - - - 0.893 - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
55. jph1a ENSDARG00000058603 2852 2.657 - 0.903 - - - 0.826 0.928 - - junctophilin 1a [Source:ZFIN;Acc:ZDB-GENE-040724-233]
56. CU633479.5 ENSDARG00000114818 1815 2.656 0.832 0.904 - - - - 0.920 - -
57. srl ENSDARG00000104587 11126 2.64 0.817 0.906 - - - - 0.917 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
58. smtnl1 ENSDARG00000041257 7410 2.639 0.879 - - - - 0.835 0.925 - - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
59. si:ch211-114n24.7 si:ch211-114n24.7 2544 2.629 0.888 0.863 - - - - 0.878 - -
60. hapln1a ENSDARG00000089769 12334 2.623 0.782 0.901 - - - - 0.940 - - hyaluronan and proteoglycan link protein 1a [Source:ZFIN;Acc:ZDB-GENE-050302-175]
61. ITGB1BP2 ENSDARG00000030176 2472 2.614 0.844 0.877 - - - - 0.893 - - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
62. serpinf1 ENSDARG00000069048 2083 2.599 - 0.874 - - - - 0.902 0.823 - serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 [Source:ZFIN;Acc:ZDB-GENE-040912-2]
63. BX294434.1 ENSDARG00000061272 6493 2.595 0.787 0.864 - - - - 0.944 - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
64. trim55a ENSDARG00000029596 2858 2.593 0.810 0.869 - - - - 0.914 - - tripartite motif containing 55a [Source:ZFIN;Acc:ZDB-GENE-040718-50]
65. ntmt1 ENSDARG00000022399 5779 2.592 0.780 0.935 - - - - 0.877 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
66. chrnd ENSDARG00000019342 2728 2.592 - 0.863 - - 0.829 - 0.900 - - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
67. ptrfa ptrfa 4363 2.591 0.857 0.911 - - - 0.823 - - -
68. C13H10orf71 3489 2.56 0.732 0.898 - - - - 0.930 - - chromosome 13 C10orf71 homolog
69. zgc:92518 ENSDARG00000016343 3837 2.558 0.787 - - - - 0.821 0.950 - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
70. tnnt2d ENSDARG00000002988 7590 2.558 0.798 0.867 - - - - 0.893 - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
71. hhatla ENSDARG00000039051 6598 2.558 0.789 0.840 - - - - 0.929 - - hedgehog acyltransferase like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1865]
72. pbxip1a ENSDARG00000071015 4960 2.551 0.720 0.882 - - - - 0.949 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
73. MYOM1 MYOM1 3870 2.543 0.768 0.875 - - - - 0.900 - -
74. ablim2 ENSDARG00000055223 1934 2.543 0.794 - - - - 0.864 0.885 - - actin binding LIM protein family, member 2 [Source:ZFIN;Acc:ZDB-GENE-100316-5]
75. lnpa ENSDARG00000063646, ENSDARG00000115902 2373 2.542 - 0.859 - - - 0.778 0.905 - - limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
76. dtnba ENSDARG00000077694 5483 2.54 0.807 0.857 - - - 0.876 - - - dystrobrevin, beta a [Source:ZFIN;Acc:ZDB-GENE-030131-3967]
77. COL22A1 COL22A1 4473 2.539 0.841 0.760 - - - - 0.938 - -
78. zgc:158296 ENSDARG00000070923 3935 2.536 - 0.802 - - - 0.809 0.925 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
79. rp42-pen rp42-pen 3395 2.536 - 0.868 - - - 0.731 0.937 - -
80. obsl1b ENSDARG00000077388 2511 2.535 - 0.867 - - - 0.756 0.912 - - obscurin-like 1b [Source:ZFIN;Acc:ZDB-GENE-050809-29]
81. tns1 tns1 5891 2.534 0.841 0.833 - - - - 0.860 - -
82. CU638714.1 ENSDARG00000100303 2132 2.534 0.799 0.902 - - - - 0.833 - -
83. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 2.533 0.796 0.837 - - - - 0.900 - - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
84. six1b ENSDARG00000026473 1908 2.532 - 0.847 - - - 0.775 0.910 - - SIX homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2308]
85. MYOM3 2720 2.531 0.760 0.891 - - - - 0.880 - - myomesin 3, transcript variant X2
86. nmrk2 ENSDARG00000067848 10293 2.53 - 0.882 - 0.716 - - 0.932 - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
87. rai14 ENSDARG00000039974, ENSDARG00000111103 916 2.528 - 0.741 - - - - 0.805 0.982 - retinoic acid induced 14 [Source:ZFIN;Acc:ZDB-GENE-040718-235]
88. fxr1 ENSDARG00000022968 2831 2.526 0.841 - - - - 0.776 0.909 - - fragile X mental retardation, autosomal homolog 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5431]
89. ATP5J_2 ATP5J_2 2381 2.523 0.722 0.880 - - - - 0.921 - -
90. mybpc2b ENSDARG00000021265 9618 2.512 0.814 0.825 - - - - 0.873 - - myosin binding protein C, fast type b [Source:ZFIN;Acc:ZDB-GENE-050320-80]
91. sox6 ENSDARG00000015536 7728 2.507 0.811 - - - - 0.812 0.884 - - SRY (sex determining region Y)-box 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6]
92. smyd2b ENSDARG00000005629 8181 2.507 0.888 0.902 - - - 0.717 - - - SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
93. AKAP2 AKAP2 4178 2.506 - - - - - 0.714 0.809 0.983 -
94. DNAJA4 ENSDARG00000051762 5657 2.502 - 0.855 - - - 0.726 0.921 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
95. usp28 ENSDARG00000008880 1850 2.501 0.789 0.817 - - - - 0.895 - - ubiquitin specific peptidase 28 [Source:ZFIN;Acc:ZDB-GENE-041008-142]
96. cmya5 ENSDARG00000061379 1423 2.5 0.809 0.794 - - - - 0.897 - - cardiomyopathy associated 5 [Source:ZFIN;Acc:ZDB-GENE-070630-1]
97. arpp21 ENSDARG00000061081 892 2.496 0.864 0.823 - - - - 0.809 - - cAMP-regulated phosphoprotein, 21 [Source:ZFIN;Acc:ZDB-GENE-081104-296]
98. cfl2 ENSDARG00000014106 8051 2.494 0.784 0.889 - - - - 0.821 - - cofilin 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1815]
99. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 2.489 0.805 - - - - 0.774 0.910 - - fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
100. cacna2d1a ENSDARG00000014804 1924 2.488 0.819 0.779 - - - - 0.890 - - calcium channel, voltage-dependent, alpha 2/delta subunit 1a [Source:ZFIN;Acc:ZDB-GENE-041210-215]

There are 1927 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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