Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lig4

Gene Name Gene ID Reads Annotation
lig4 ENSDARG00000060620 369 ligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]










Genes with expression patterns similar to lig4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lig4 ENSDARG00000060620 369 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]
2. CT030012.1 ENSDARG00000105611 154 2.699 0.941 0.835 - - - - 0.923 - -
3. mnat1 ENSDARG00000002077 287 1.943 - - - - 0.995 - 0.948 - - MNAT CDK-activating kinase assembly factor 1 [Source:ZFIN;Acc:ZDB-GENE-041010-203]
4. dopey1 438 1.923 - - - - 0.998 - 0.925 - - dopey family member 1, transcript variant X4
5. GPR101 ENSDARG00000039218 157 1.914 - - - - - 0.916 - 0.998 - G protein-coupled receptor 101 [Source:ZFIN;Acc:ZDB-GENE-070914-1]
6. fam193b ENSDARG00000102831 442 1.896 - - - - 0.999 - 0.897 - - family with sequence similarity 193, member B [Source:ZFIN;Acc:ZDB-GENE-111102-1]
7. smcr8a ENSDARG00000052818 559 1.89 - - - - - - 0.895 0.995 - Smith-Magenis syndrome chromosome region, candidate 8a [Source:ZFIN;Acc:ZDB-GENE-071212-4]
8. psmb6 ENSDARG00000002240 8015 1.89 - - - - 0.972 - - 0.918 - proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
9. aldh16a1 ENSDARG00000037935 617 1.883 - - - - 0.993 - 0.890 - - aldehyde dehydrogenase 16 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-070112-2062]
10. ptprz1b ENSDARG00000020871 435 1.883 - 0.884 - - - - - 0.999 - protein tyrosine phosphatase, receptor-type, Z polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-050506-100]
11. cenpi ENSDARG00000052565 482 1.879 - - - - 0.995 - 0.884 - - centromere protein I [Source:ZFIN;Acc:ZDB-GENE-060810-127]
12. mid1 ENSDARG00000060482 154 1.878 - 0.981 - - - 0.897 - - - midline 1 [Source:ZFIN;Acc:ZDB-GENE-110411-205]
13. polr2b ENSDARG00000098783 90 1.868 - 0.922 - - - - 0.946 - - polymerase (RNA) II (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-041008-1]
14. mia2 ENSDARG00000099973 139 1.859 - - - - - 0.915 0.944 - - MIA SH3 domain ER export factor 2 [Source:ZFIN;Acc:ZDB-GENE-100618-1]
15. ddi2 ENSDARG00000006477 4190 1.846 - - - - 0.948 - - 0.898 - DNA-damage inducible protein 2 [Source:ZFIN;Acc:ZDB-GENE-031030-15]
16. cnstb ENSDARG00000042759 105 1.843 - - - - - 0.891 0.952 - - consortin, connexin sorting protein b [Source:ZFIN;Acc:ZDB-GENE-041001-189]
17. C21H5orf15 C21H5orf15 2318 1.84 - - - - - - 0.878 0.962 -
18. pank1b ENSDARG00000010098 3202 1.832 - - - - 0.913 - - 0.919 - pantothenate kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070209-259]
19. rab5c ENSDARG00000026712 4733 1.832 - - - - 0.949 - - 0.883 - RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
20. timm17a ENSDARG00000029510, ENSDARG00000115486 4295 1.828 - - - - 0.932 - - 0.896 - translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:ZFIN;Acc:ZDB-GENE-031030-6]
21. si:ch211-113p18.3 ENSDARG00000087835 377 1.824 - - - - - - 0.826 0.998 - si:ch211-113p18.3 [Source:ZFIN;Acc:ZDB-GENE-030131-4983]
22. eif4enif1 ENSDARG00000016177 238 1.813 - 0.894 - - - - 0.919 - - eukaryotic translation initiation factor 4E nuclear import factor 1 [Source:ZFIN;Acc:ZDB-GENE-050320-113]
23. lima1 lima1 4760 1.81 - - - - 0.977 - - 0.833 -
24. si:ch211-259i2.2 si:ch211-259i2.2 45 1.805 - 0.922 - - - - 0.883 - -
25. atcaya ENSDARG00000071678 344 1.779 0.787 - - - - - - 0.992 - ataxia, cerebellar, Cayman type a [Source:ZFIN;Acc:ZDB-GENE-070705-185]
26. tmem50a ENSDARG00000015757 3244 1.778 - - - - 0.975 - 0.803 - - transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]
27. ek1 ENSDARG00000020080 742 1.773 0.782 - - - - - - 0.991 - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
28. chchd2 ENSDARG00000059304, ENSDARG00000112202 7438 1.758 - - - - 0.864 - - 0.894 - coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1737]
29. si:dkey-177p2.18 ENSDARG00000091633 91 1.743 - - - - - 0.864 0.879 - - si:dkey-177p2.18 [Source:ZFIN;Acc:ZDB-GENE-130603-12]
30. impdh1a ENSDARG00000042336, ENSDARG00000115253, ENSDARG00000116322 67 1.738 - - - - - 0.850 0.888 - - IMP (inosine 5'-monophosphate) dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-040704-15]
31. pvalb6 ENSDARG00000009311, ENSDARG00000113947 248 1.738 0.741 - - - 0.997 - - - - parvalbumin 6 [Source:ZFIN;Acc:ZDB-GENE-040912-95]
32. fam134c fam134c 1550 1.735 - - - - 0.978 - 0.757 - -
33. zgc:113442 ENSDARG00000101906 3092 1.734 - - - - 0.968 - 0.766 - - zgc:113442 [Source:ZFIN;Acc:ZDB-GENE-050227-2]
34. TRAPPC10 ENSDARG00000098118 954 1.73 - - - - 0.992 - 0.738 - - trafficking protein particle complex 10 [Source:ZFIN;Acc:ZDB-GENE-131115-1]
35. gins2 ENSDARG00000002304 1187 1.728 - - - - 0.967 - 0.761 - - GINS complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050419-19]
36. tmem127 ENSDARG00000030981 1389 1.72 - - - - - - 0.799 0.921 - transmembrane protein 127 [Source:ZFIN;Acc:ZDB-GENE-050522-97]
37. PTGFRN_1 ENSDARG00000075505 1447 1.718 - - - - 0.914 0.804 - - - prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
38. eif4ba ENSDARG00000017439, ENSDARG00000117080 1882 1.718 - - - - - - 0.734 0.984 - eukaryotic translation initiation factor 4Ba [Source:ZFIN;Acc:ZDB-GENE-060629-1]
39. zgc:112962 ENSDARG00000069102 431 1.715 - - - - - - 0.719 0.996 - zgc:112962 [Source:ZFIN;Acc:ZDB-GENE-050410-15]
40. tmub2 ENSDARG00000056467, ENSDARG00000109925 100 1.713 - 0.835 - - - 0.878 - - - transmembrane and ubiquitin-like domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030616-254]
41. tubgcp2 ENSDARG00000013079 1520 1.712 - - - - 0.733 - - 0.979 - tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
42. CABZ01043370.1 CABZ01043370.1 2013 1.71 - - - - - - 0.733 0.977 -
43. slc38a6 ENSDARG00000054312 112 1.708 - - - - - 0.873 0.835 - - solute carrier family 38, member 6 [Source:ZFIN;Acc:ZDB-GENE-050522-51]
44. cables2a ENSDARG00000076964 1330 1.708 - - - - 0.985 0.723 - - - Cdk5 and Abl enzyme substrate 2a [Source:ZFIN;Acc:ZDB-GENE-091118-58]
45. ctgfb ENSDARG00000104292 69 1.707 - - - - - 0.785 0.922 - - connective tissue growth factor b [Source:ZFIN;Acc:ZDB-GENE-070705-82]
46. med13b ENSDARG00000003910 1143 1.705 0.708 - - - 0.997 - - - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
47. palm3 ENSDARG00000071215 1776 1.704 - - - - 0.973 - 0.731 - - paralemmin 3 [Source:ZFIN;Acc:ZDB-GENE-061215-74]
48. si:dkey-32e6.3 ENSDARG00000092934 133 1.703 - 0.843 - - - 0.860 - - - si:dkey-32e6.3 [Source:ZFIN;Acc:ZDB-GENE-081104-408]
49. prp19 prp19 4804 1.702 - - - - - - 0.819 0.883 -
50. si:ch211-150o23.2 ENSDARG00000092746 788 1.7 - 0.707 - - 0.993 - - - - si:ch211-150o23.2 [Source:ZFIN;Acc:ZDB-GENE-060503-386]
51. sh3gl1b ENSDARG00000002642, ENSDARG00000113208 61 1.699 - 0.841 - - - 0.858 - - - SH3-domain GRB2-like 1b [Source:ZFIN;Acc:ZDB-GENE-031001-6]
52. cetn3 ENSDARG00000011825 1087 1.698 - - - - - - 0.700 0.998 - centrin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-152]
53. atp2a2a ENSDARG00000029439 940 1.691 - - - - 0.987 - 0.704 - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a [Source:ZFIN;Acc:ZDB-GENE-040426-702]
54. ncbp2 ENSDARG00000014898 232 1.681 - - - - - 0.790 0.891 - - nuclear cap binding protein subunit 2 [Source:ZFIN;Acc:ZDB-GENE-020419-31]
55. CR382327.4 CR382327.4 143 1.672 - 0.922 - - - 0.750 - - -
56. CU570983.1 CU570983.1 83 1.668 - 0.828 - - - 0.840 - - -
57. eps15 ENSDARG00000078216 246 1.665 0.712 0.953 - - - - - - - epidermal growth factor receptor pathway substrate 15 [Source:ZFIN;Acc:ZDB-GENE-081104-264]
58. nr2c2ap ENSDARG00000056162 368 1.66 - - - - - 0.798 0.862 - - nuclear receptor 2C2-associated protein [Source:ZFIN;Acc:ZDB-GENE-050208-758]
59. nkx6.2 ENSDARG00000104735 5081 1.659 0.764 - - - - - - 0.895 - NK6 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-070626-1]
60. fam83b ENSDARG00000078309 318 1.648 - - - - - 0.742 0.906 - - family with sequence similarity 83, member B [Source:ZFIN;Acc:ZDB-GENE-030131-7066]
61. nfatc1 ENSDARG00000036168 16 1.644 0.854 0.790 - - - - - - - nuclear factor of activated T cells 1 [Source:ZFIN;Acc:ZDB-GENE-060503-677]
62. sqlea ENSDARG00000079946 145 1.634 - - - - - 0.720 0.914 - - squalene epoxidase a [Source:ZFIN;Acc:ZDB-GENE-071004-98]
63. taf5 ENSDARG00000018325 1363 1.628 - - - - - 0.755 0.873 - - TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-051120-180]
64. chek2 ENSDARG00000025820, ENSDARG00000115597 77 1.626 - - - - - 0.775 0.851 - - checkpoint kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8942]
65. usf1 ENSDARG00000041689 1619 1.615 - - - - - - 0.875 0.740 - upstream transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1072]
66. PARP9 ENSDARG00000006848 34 1.614 0.854 - - - - 0.760 - - - poly(ADP-ribose) polymerase family member 9 [Source:ZFIN;Acc:ZDB-GENE-081104-179]
67. cbx3a ENSDARG00000003860 4922 1.613 - - - - 0.723 - - 0.890 - chromobox homolog 3a (HP1 gamma homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-1158]
68. mea1 ENSDARG00000039820 589 1.607 0.854 - - - - - 0.753 - - male-enhanced antigen 1 [Source:ZFIN;Acc:ZDB-GENE-070424-117]
69. vcana ENSDARG00000103515 611 1.604 - - - - - 0.775 0.829 - - versican a [Source:ZFIN;Acc:ZDB-GENE-011023-1]
70. hace1 ENSDARG00000062280 556 1.597 - - - - - 0.766 0.831 - - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-110411-52]
71. SAYSD1 SAYSD1 149 1.585 - - - - - 0.844 0.741 - -
72. BX510922.1 ENSDARG00000101184 147 1.577 - 0.719 - - - 0.858 - - -
73. si:dkey-22o12.7 si:dkey-22o12.7 1812 1.564 - - - - - - 0.707 0.857 -
74. AKIP1 ENSDARG00000069037, ENSDARG00000111207, ENSDARG00000115020 351 1.562 - - - - - 0.726 0.836 - - A kinase (PRKA) interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-030829-24]
75. RPTOR ENSDARG00000098726, ENSDARG00000116019 420 1.561 - 0.762 - - - - 0.799 - - regulatory associated protein of MTOR, complex 1 [Source:ZFIN;Acc:ZDB-GENE-130530-685]
76. ccdc12 ENSDARG00000023003, ENSDARG00000113770 1731 1.55 - - - - - - 0.742 0.808 - coiled-coil domain containing 12 [Source:ZFIN;Acc:ZDB-GENE-040801-108]
77. cdk2ap2 ENSDARG00000103145 8024 1.549 - - - - 0.799 - 0.750 - - cyclin-dependent kinase 2 associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040718-35]
78. CABZ01058048.1 CABZ01058048.1 268 1.541 0.734 - - - - 0.807 - - -
79. serinc5 ENSDARG00000008153 2863 1.54 - - - - 0.719 - 0.821 - - serine incorporator 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2918]
80. chic2 ENSDARG00000022690 184 1.536 - - - - - 0.749 0.787 - - cysteine-rich hydrophobic domain 2 [Source:ZFIN;Acc:ZDB-GENE-040426-778]
81. CCDC134 CCDC134 477 1.53 - - - - - - 0.719 0.811 -
82. vcanb ENSDARG00000009401 3611 1.511 - - - - - 0.718 0.793 - - versican b [Source:ZFIN;Acc:ZDB-GENE-030131-2185]
83. exosc5 ENSDARG00000040557, ENSDARG00000113276 727 1.497 - - - - - 0.706 0.791 - - exosome component 5 [Source:ZFIN;Acc:ZDB-GENE-060503-675]
84. dlg4 88 1.496 0.724 0.772 - - - - - - - discs large MAGUK scaffold protein 4, transcript variant X5
85. fras1 ENSDARG00000054619, ENSDARG00000114204 4459 1.491 - - - - - 0.759 0.732 - - Fraser extracellular matrix complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-060526-68]
86. atg4b ENSDARG00000052104 758 1.468 - - 0.714 - - - 0.754 - - autophagy related 4B, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-040917-3]
87. si:ch211-253p18.2 ENSDARG00000092770 21 1 1.000 - - - - - - - - si:ch211-253p18.2 [Source:ZFIN;Acc:ZDB-GENE-041001-106]
88. si:dkey-77f17.1 si:dkey-77f17.1 83 1 1.000 - - - - - - - -
89. birc5b ENSDARG00000055655, ENSDARG00000110817 8 1 1.000 - - - - - - - - baculoviral IAP repeat containing 5b [Source:ZFIN;Acc:ZDB-GENE-030826-2]
90. si:dkey-81p22.11 ENSDARG00000093797 68 1 1.000 - - - - - - - - si:dkey-81p22.11 [Source:NCBI gene;Acc:100535473]
91. si:ch211-161h7.5 ENSDARG00000093044 12 1 1.000 - - - - - - - - si:ch211-161h7.5 [Source:ZFIN;Acc:ZDB-GENE-091204-265]
92. si:dkey-117p18.2 si:dkey-117p18.2 104 1 - - - - - - - 1.000 -
93. CABZ01077217.1_1 ENSDARG00000079145 184 1 1.000 - - - - - - - - uncharacterized LOC100007503 [Source:NCBI gene;Acc:100007503]
94. slc29a4 ENSDARG00000059690 478 1 - - - - - - - 1.000 - solute carrier family 29 (equilibrative nucleoside transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-1932]
95. stk35_1 ENSDARG00000086856 3 1 1.000 - - - - - - - - serine/threonine kinase 35 [Source:ZFIN;Acc:ZDB-GENE-061103-553]
96. si:dkey-14o6.7 si:dkey-14o6.7 9 1 1.000 - - - - - - - -
97. GFOD1 ENSDARG00000061363 67 1 1.000 - - - - - - - - glucose-fructose oxidoreductase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21096]
98. kif7 ENSDARG00000033099 971 0.999 - - - - - - - 0.999 - kinesin family member 7 [Source:ZFIN;Acc:ZDB-GENE-050307-1]
99. C20H1orf198 C20H1orf198 246 0.999 - - - - - - - 0.999 -
100. ankrd37 ENSDARG00000056376 131 0.999 - - - - - - - 0.999 - ankyrin repeat domain 37 [Source:ZFIN;Acc:ZDB-GENE-070308-1]

There are 2007 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA