Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lig3

Gene Name Gene ID Reads Annotation
lig3 ENSDARG00000052553 2665 ligase III, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-030131-8453]










Genes with expression patterns similar to lig3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lig3 ENSDARG00000052553 2665 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ligase III, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-030131-8453]
2. eif3ha ENSDARG00000102452 9238 1.98 - - - 0.982 - - - - 0.998 eukaryotic translation initiation factor 3, subunit H, a [Source:ZFIN;Acc:ZDB-GENE-040808-19]
3. wu:fb17g07 wu:fb17g07 10567 1.815 - - - 0.980 - - 0.835 - -
4. slc25a47a ENSDARG00000059923 1285 1.789 - - - - - - 0.789 - 1.000 solute carrier family 25, member 47a [Source:ZFIN;Acc:ZDB-GENE-060616-266]
5. napa napa 4444 1.787 - 0.794 - 0.993 - - - - -
6. angptl4 ENSDARG00000035859 2701 1.764 - - - 0.996 - - 0.768 - - angiopoietin-like 4 [Source:ZFIN;Acc:ZDB-GENE-041111-222]
7. emc6 ENSDARG00000035282 4981 1.753 - 0.762 - 0.991 - - - - - ER membrane protein complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-030131-9164]
8. prss35 ENSDARG00000100691, ENSDARG00000109353 2333 1.748 - 0.750 - 0.998 - - - - - protease, serine, 35 [Source:ZFIN;Acc:ZDB-GENE-040704-55]
9. meis3 ENSDARG00000002795 2509 1.744 - - - 0.992 - - 0.752 - - myeloid ecotropic viral integration site 3 [Source:ZFIN;Acc:ZDB-GENE-010406-2]
10. nucks1a ENSDARG00000078473 28285 1.742 - - - 0.821 - - - - 0.921 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
11. ccnt2b ENSDARG00000036510 3353 1.725 - - - - - - 0.726 - 0.999 cyclin T2b [Source:ZFIN;Acc:ZDB-GENE-030131-183]
12. lsm14ab ENSDARG00000100553 3837 1.721 - - - 0.992 - - 0.729 - - LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
13. wu:fj13e08 1223 1.719 - - - 0.997 - - 0.722 - - wu:fj13e08
14. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 1.694 - - - 0.983 - - 0.711 - - chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
15. BX511086.1 BX511086.1 8308 1.684 - - - - - - 0.707 - 0.977
16. sub1a ENSDARG00000053446 13383 1.681 - - - 0.945 - 0.736 - - - SUB1 homolog, transcriptional regulator a [Source:ZFIN;Acc:ZDB-GENE-050522-151]
17. pias2 ENSDARG00000092979, ENSDARG00000115060 2317 1.655 - 0.814 - 0.841 - - - - - protein inhibitor of activated STAT, 2 [Source:ZFIN;Acc:ZDB-GENE-060424-1]
18. stmn1a ENSDARG00000004169 21169 1.65 - - - 0.950 - - 0.700 - - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
19. rnf114 ENSDARG00000009886 725 1.64 - 0.861 - - - 0.779 - - - ring finger protein 114 [Source:ZFIN;Acc:ZDB-GENE-040813-1]
20. mtg2 ENSDARG00000063574 299 1.628 - 0.817 - - - 0.811 - - - mitochondrial ribosome-associated GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2209]
21. ube2w ENSDARG00000044923 438 1.624 - 0.764 - - - 0.860 - - - ubiquitin-conjugating enzyme E2W (putative) [Source:ZFIN;Acc:ZDB-GENE-050506-94]
22. zgc:136791 97 1.62 - - - - - 0.866 0.754 - - zgc:136791, transcript variant X3
23. CR450842.1 CR450842.1 129 1.617 - 0.805 - - - 0.812 - - -
24. NUP85 ENSDARG00000098679 804 1.616 - - - - - 0.885 0.731 - - nucleoporin 85 [Source:ZFIN;Acc:ZDB-GENE-040801-145]
25. unc119.1 ENSDARG00000009629 1193 1.614 - - - - - 0.894 - 0.720 - unc-119 homolog 1 [Source:ZFIN;Acc:ZDB-GENE-030219-130]
26. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 1.612 - 0.786 - - - 0.826 - - - structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
27. kirrel3l ENSDARG00000104665 499 1.596 - 0.791 - - - - 0.805 - - kirre like nephrin family adhesion molecule 3, like [Source:ZFIN;Acc:ZDB-GENE-070831-1]
28. si:dkey-1f1.4 si:dkey-1f1.4 105 1.592 0.783 - - - - 0.809 - - -
29. zgc:163098 ENSDARG00000078911, ENSDARG00000111691, ENSDARG00000113714, ENSDARG00000115110 1802 1.567 - 0.731 - - - - 0.836 - - zgc:163098 [Source:ZFIN;Acc:ZDB-GENE-070410-141]
30. si:dkey-18j14.4 si:dkey-18j14.4 60 1.558 0.720 - - - - 0.838 - - -
31. ATP10B ENSDARG00000076230 989 1.557 - 0.765 - - - 0.792 - - - ATPase phospholipid transporting 10B [Source:ZFIN;Acc:ZDB-GENE-130530-796]
32. COQ10A COQ10A 426 1.552 - 0.754 - - - 0.798 - - -
33. stxbp5b ENSDARG00000029234 760 1.549 0.780 - - - - 0.769 - - - syntaxin binding protein 5b (tomosyn) [Source:ZFIN;Acc:ZDB-GENE-090821-5]
34. triobp triobp 455 1.541 - 0.800 - - - - 0.741 - -
35. h2afx ENSDARG00000029406 2116 1.54 - 0.804 - - - - 0.736 - - H2A histone family, member X [Source:ZFIN;Acc:ZDB-GENE-040426-987]
36. kctd10 ENSDARG00000017115 1659 1.54 - - - - - 0.817 0.723 - - potassium channel tetramerization domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-040426-2843]
37. paf1 ENSDARG00000098432 1806 1.54 - - - - - 0.774 - 0.766 - PAF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-050506-101]
38. zgc:112496 ENSDARG00000004274 1258 1.527 - 0.792 - - - 0.735 - - - zgc:112496 [Source:ZFIN;Acc:ZDB-GENE-050320-25]
39. azin1a ENSDARG00000052789 387 1.527 - 0.722 - - - 0.805 - - - antizyme inhibitor 1a [Source:ZFIN;Acc:ZDB-GENE-050417-20]
40. rfwd2 740 1.519 - 0.791 - - - - - 0.728 - ring finger and WD repeat domain 2, transcript variant X1
41. si:dkey-10p5.10 ENSDARG00000099307 371 1.512 0.739 - - - - - 0.773 - - si:dkey-10p5.10 [Source:ZFIN;Acc:ZDB-GENE-120215-130]
42. exoc7 ENSDARG00000087229 987 1.512 - 0.770 - - - 0.742 - - - exocyst complex component 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2752]
43. get4 ENSDARG00000024398 1818 1.505 - - - - - 0.702 0.803 - - golgi to ER traffic protein 4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5399]
44. usp6nl ENSDARG00000022187, ENSDARG00000109772 432 1.501 - 0.784 - - - - 0.717 - - USP6 N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041210-192]
45. htt ENSDARG00000052866 844 1.5 - 0.787 - - - - - 0.713 - huntingtin [Source:ZFIN;Acc:ZDB-GENE-990415-131]
46. zcchc9 ENSDARG00000007531 1748 1.498 0.719 - - - - 0.779 - - - zinc finger, CCHC domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-031030-9]
47. MSR1 MSR1 449 1.498 - 0.718 - - - 0.780 - - -
48. panx1a ENSDARG00000025285 352 1.482 - 0.778 - - - - 0.704 - - pannexin 1a [Source:ZFIN;Acc:ZDB-GENE-040426-766]
49. oxnad1 ENSDARG00000062664 2684 1.48 - 0.754 - - - - 0.726 - - oxidoreductase NAD-binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-199]
50. CABZ01073424.1 ENSDARG00000107858 688 1.475 - - - - - 0.731 0.744 - -
51. CABZ01115256.1 CABZ01115256.1 683 1.473 - 0.715 - - - 0.758 - - -
52. si:dkey-211g8.5 ENSDARG00000092259 224 1.463 - - - - - 0.730 - 0.733 - si:dkey-211g8.5 [Source:ZFIN;Acc:ZDB-GENE-060503-718]
53. znf207a ENSDARG00000015538 2630 1.456 - - - - - 0.723 0.733 - - zinc finger protein 207, a [Source:ZFIN;Acc:ZDB-GENE-040426-2273]
54. CINP ENSDARG00000073910, ENSDARG00000111466 452 1.454 - 0.721 - - - - - 0.733 - cyclin-dependent kinase 2 interacting protein [Source:ZFIN;Acc:ZDB-GENE-050506-72]
55. si:dkey-30c15.13 ENSDARG00000069524, ENSDARG00000114258 403 1.453 0.709 0.744 - - - - - - - si:dkey-30c15.13 [Source:ZFIN;Acc:ZDB-GENE-060503-73]
56. zgc:73324 zgc:73324 989 1.453 - 0.748 - - - - 0.705 - -
57. PCSK6 ENSDARG00000104574 710 1.45 0.726 - - - - - 0.724 - - proprotein convertase subtilisin/kexin type 6 [Source:ZFIN;Acc:ZDB-GENE-100908-1]
58. sestd1 ENSDARG00000040614 1014 1.449 - - - - - 0.725 0.724 - - SEC14 and spectrin domains 1 [Source:ZFIN;Acc:ZDB-GENE-030801-1]
59. ppp2r3b ENSDARG00000076004 951 1.443 - 0.710 - - - - 0.733 - - protein phosphatase 2, regulatory subunit B'', beta [Source:ZFIN;Acc:ZDB-GENE-070912-268]
60. brd3b ENSDARG00000100129 6387 1.439 - - - - - 0.710 0.729 - - bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
61. keap1a ENSDARG00000016132 363 1.434 - 0.717 - - - 0.717 - - - kelch-like ECH-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-556]
62. chd1l ENSDARG00000015471 1142 1.425 - 0.722 - - - - 0.703 - - chromodomain helicase DNA binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040426-892]
63. gbp1 ENSDARG00000038668 520 1.424 - 0.708 - - - 0.716 - - - guanylate binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040718-32]
64. gli3 ENSDARG00000052131 986 1.422 - 0.702 - - - 0.720 - - - GLI family zinc finger 3 [Source:ZFIN;Acc:ZDB-GENE-041111-162]
65. arid1ab ENSDARG00000101891 1722 1.421 0.714 - - - - - 0.707 - - AT rich interactive domain 1Ab (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-030131-5725]
66. bhlhe22 ENSDARG00000058039 1673 1 - - - - - - - - 1.000 basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
67. ranbp10 ENSDARG00000062138, ENSDARG00000110661 2067 1 - - - - - - - - 1.000 RAN binding protein 10 [Source:ZFIN;Acc:ZDB-GENE-070705-86]
68. SLC9A1 ENSDARG00000067784 1494 1 - - - - - - - - 1.000 solute carrier family 9 member A1 [Source:HGNC Symbol;Acc:HGNC:11071]
69. l3mbtl2 ENSDARG00000056079, ENSDARG00000116037 1645 1 - - - - - - - - 1.000 l(3)mbt-like 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-8713]
70. vps51 ENSDARG00000062016, ENSDARG00000110076 1646 1 - - - - - - - - 1.000 vacuolar protein sorting 51 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-6008]
71. EPHB3 2215 1 - - - - - - - - 1.000 EPH receptor B3
72. MYO5C ENSDARG00000104235 1285 1 - - - - - - - - 1.000 myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
73. nol11 ENSDARG00000026767 2528 1 - - - - - - - - 1.000 nucleolar protein 11 [Source:ZFIN;Acc:ZDB-GENE-030131-419]
74. cox10 ENSDARG00000034309, ENSDARG00000113352 2709 1 - - - - - - - - 1.000 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 [Source:ZFIN;Acc:ZDB-GENE-041111-239]
75. eno2 ENSDARG00000014287 2162 1 - - - - - - - - 1.000 enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
76. nacad ENSDARG00000012347 1268 1 - - - - - - - - 1.000 NAC alpha domain containing [Source:ZFIN;Acc:ZDB-GENE-091020-7]
77. vgll4b ENSDARG00000103730 5266 0.999 - - - - - - - - 0.999 vestigial-like family member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-2445]
78. uqcrc2a ENSDARG00000014794 3949 0.999 - - - - - - - - 0.999 ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
79. obsl1b ENSDARG00000077388 2511 0.999 - - - - - - - - 0.999 obscurin-like 1b [Source:ZFIN;Acc:ZDB-GENE-050809-29]
80. matr3l1.1 ENSDARG00000000394, ENSDARG00000001162 3757 0.999 - - - - - - - - 0.999 matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
81. nhp2 ENSDARG00000069422 9925 0.999 - - - - - - - - 0.999 NHP2 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-533]
82. aurka ENSDARG00000012485 3304 0.999 - - - - - - - - 0.999 aurora kinase A [Source:ZFIN;Acc:ZDB-GENE-040801-161]
83. abca12 ENSDARG00000074749 2712 0.998 - - - - - - - - 0.998 ATP-binding cassette, sub-family A (ABC1), member 12 [Source:ZFIN;Acc:ZDB-GENE-030131-9790]
84. bin2b ENSDARG00000010255 2649 0.998 - - - - - - - - 0.998 bridging integrator 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5598]
85. hoxb4a ENSDARG00000013533 3857 0.998 - - - - - - - - 0.998 homeobox B4a [Source:ZFIN;Acc:ZDB-GENE-990415-105]
86. hoxb9a ENSDARG00000056023 11856 0.998 - - - - - - - - 0.998 homeobox B9a [Source:ZFIN;Acc:ZDB-GENE-990415-109]
87. yipf4 ENSDARG00000030957, ENSDARG00000109994 4665 0.998 - - - - - - - - 0.998 Yip1 domain family, member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2253]
88. rars ENSDARG00000054530 1495 0.998 - - - 0.998 - - - - - arginyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9014]
89. notch2 ENSDARG00000043130 4430 0.998 - - - - - - - - 0.998 notch 2 [Source:ZFIN;Acc:ZDB-GENE-000329-4]
90. ppp2r5a ENSDARG00000027017 2397 0.997 - - - 0.997 - - - - - protein phosphatase 2, regulatory subunit B', alpha isoform [Source:ZFIN;Acc:ZDB-GENE-040724-174]
91. atat1 ENSDARG00000004472 700 0.997 - - - 0.997 - - - - - alpha tubulin acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2120]
92. kdsr ENSDARG00000012021 1560 0.997 - - - 0.997 - - - - - 3-ketodihydrosphingosine reductase [Source:ZFIN;Acc:ZDB-GENE-040426-853]
93. ZNF628 1104 0.997 - - - 0.997 - - - - - zinc finger protein 628, transcript variant X3
94. ccdc22 ENSDARG00000052379 2276 0.997 - - - 0.997 - - - - - coiled-coil domain containing 22 [Source:ZFIN;Acc:ZDB-GENE-050913-93]
95. ARFGAP1 ENSDARG00000101616 2952 0.997 - - - 0.997 - - - - - ADP-ribosylation factor GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-041114-130]
96. mbtps2 ENSDARG00000057577 1285 0.997 - - - 0.997 - - - - - membrane-bound transcription factor peptidase, site 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6598]
97. add3a ENSDARG00000040874 4938 0.997 - - - - - - - - 0.997 adducin 3 (gamma) a [Source:ZFIN;Acc:ZDB-GENE-030131-2721]
98. barhl2 ENSDARG00000104361, ENSDARG00000114681, ENSDARG00000115723 2000 0.997 - - - - - - - - 0.997 BarH-like homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-050913-153]
99. RAPGEF2 ENSDARG00000005482 2068 0.997 - - - 0.997 - - - - - Rap guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6959]
100. exosc8 ENSDARG00000068755 951 0.997 - - - 0.997 - - - - - exosome component 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1736]

There are 1376 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA