Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lhx5

Gene Name Gene ID Reads Annotation
lhx5 ENSDARG00000057936 785 LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]










Genes with expression patterns similar to lhx5

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lhx5 ENSDARG00000057936 785 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
2. fez1 ENSDARG00000023174 701 4.372 0.814 1.000 - - - 0.919 0.800 0.839 - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
3. stmn2a ENSDARG00000033234 2272 3.621 0.945 - - - - 0.966 0.936 - 0.774 stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
4. nrn1a ENSDARG00000071860 1311 3.607 0.881 - - - - 0.965 0.885 - 0.876 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
5. stmn1b ENSDARG00000033655 9491 3.598 0.852 - - - - 0.978 0.930 - 0.838 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
6. TMEM57 TMEM57 260 3.59 - 1.000 0.874 - - 0.797 0.919 - -
7. gap43 ENSDARG00000099744 4114 3.552 0.946 - - - - 0.924 0.899 0.783 - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
8. adcyap1b ENSDARG00000027740 1539 3.529 0.987 - - - - 0.947 0.737 0.858 - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
9. ADAM22 ENSDARG00000060532 2259 3.499 - - - - - 0.914 0.898 0.869 0.818 ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
10. scg2b ENSDARG00000038574 345 3.491 - 1.000 - - 0.709 0.965 0.817 - - secretogranin II (chromogranin C), b [Source:ZFIN;Acc:ZDB-GENE-061103-160]
11. mdkb ENSDARG00000020708 5393 3.49 0.947 - - - - 0.970 0.852 - 0.721 midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
12. slc1a2b ENSDARG00000102453 3136 3.481 0.920 - - - - 0.944 0.912 - 0.705 solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
13. si:ch211-11c15.3 si:ch211-11c15.3 1279 3.454 0.885 - - - - 0.974 0.889 0.706 -
14. tuba1c ENSDARG00000055216 8384 3.444 0.784 - - - - 0.934 0.962 0.764 - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
15. calb2a ENSDARG00000041062, ENSDARG00000110220 459 3.439 0.773 - - - - 0.961 0.959 0.746 - calbindin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1677]
16. C7H4orf48 C7H4orf48 1455 3.437 0.740 - - - - 0.970 0.874 0.853 -
17. pou4f2 ENSDARG00000069737 451 3.425 0.870 - - - - 0.918 0.794 - 0.843 POU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
18. mllt11 ENSDARG00000071026 2518 3.422 0.802 - - - - 0.947 0.877 0.796 - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
19. GRIN2B GRIN2B 140 3.419 0.940 1.000 - - - 0.736 - 0.743 -
20. bhlhe22 ENSDARG00000058039 1673 3.416 0.749 0.954 - - - - 0.955 0.758 - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
21. her4.1 ENSDARG00000056732 1264 3.412 - - - - - 0.935 0.847 0.847 0.783 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
22. rbfox3 rbfox3 1443 3.4 0.888 - - - - 0.826 0.929 - 0.757
23. scrt2 ENSDARG00000056175 4331 3.391 0.821 - - - - 0.945 0.890 0.735 - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
24. myt1b ENSDARG00000102879 5411 3.383 - - - 0.846 - 0.882 0.854 - 0.801 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
25. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 3.373 0.790 0.880 - - - - 0.956 0.747 - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
26. rims2b ENSDARG00000102690 275 3.356 0.718 0.875 - - - 0.907 0.856 - - regulating synaptic membrane exocytosis 2b [Source:ZFIN;Acc:ZDB-GENE-060503-893]
27. mex3b ENSDARG00000058369 1867 3.354 - - - - - 0.822 0.896 0.780 0.856 mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
28. plp1a ENSDARG00000103732 3544 3.346 0.787 - - - - 0.895 0.930 - 0.734 proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
29. rusc1 ENSDARG00000078125 617 3.323 0.855 - - - - 0.832 0.820 - 0.816 RUN and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-274]
30. nrxn3b ENSDARG00000062693 192 3.317 0.753 - - - - 0.890 0.896 - 0.778 neurexin 3b [Source:ZFIN;Acc:ZDB-GENE-070206-10]
31. ZFHX3 ENSDARG00000103057 7759 3.254 0.815 - - - - 0.827 0.881 0.731 - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
32. CABZ01111990.1 CABZ01111990.1 4374 3.244 0.738 - - - - - 0.940 0.824 0.742
33. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 3.242 0.804 - - - - 0.843 0.815 0.780 - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
34. dpysl4 ENSDARG00000103490 534 3.233 0.766 - - - - 0.803 0.956 0.708 - dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
35. rtn1b ENSDARG00000021143 1682 3.221 0.719 - - - - 0.958 0.801 0.743 - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
36. npas3b npas3b 1446 3.214 - - - 0.725 - 0.825 0.873 - 0.791
37. nova2 ENSDARG00000017673 7685 3.181 - - - 0.715 - 0.805 0.905 - 0.756 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
38. gnao1a ENSDARG00000016676 8184 3.151 0.820 - - - - - 0.913 0.706 0.712 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
39. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 3.121 0.795 - - - - 0.783 0.807 - 0.736 sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
40. negr1 ENSDARG00000021607 1051 3.083 0.799 - - 0.749 - 0.764 0.771 - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
41. TUSC5 TUSC5 1436 2.888 0.978 - - - - 0.996 0.914 - -
42. tmem178 ENSDARG00000020758 77 2.861 0.954 1.000 - - - 0.907 - - - transmembrane protein 178 [Source:ZFIN;Acc:ZDB-GENE-060929-756]
43. SV2B SV2B 208 2.839 0.920 - - - - 0.935 0.984 - -
44. atp2b3b ENSDARG00000023445 1424 2.837 0.960 - - - - 0.988 0.889 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
45. snap25a ENSDARG00000020609 4537 2.823 0.913 - - - - 0.956 0.954 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
46. cadm3 ENSDARG00000057013 1545 2.822 0.931 - - - - 0.950 0.941 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
47. pnoca ENSDARG00000025024 467 2.822 0.976 - - - - 0.928 0.918 - - prepronociceptin a [Source:ZFIN;Acc:ZDB-GENE-101229-1]
48. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.812 0.956 - - - - 0.974 0.882 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
49. pou4f1 ENSDARG00000005559 821 2.81 0.963 - - - - 0.864 0.983 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
50. st6gal1 ENSDARG00000044514 142 2.805 - 1.000 - - - 0.883 0.922 - - ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:ZFIN;Acc:ZDB-GENE-060322-3]
51. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 2.803 0.855 - - - - 0.980 0.968 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
52. cers6 ENSDARG00000053583 247 2.797 0.892 - - - - 0.950 0.955 - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
53. TUBB8P7_1 TUBB8P7_1 2722 2.789 0.855 - - - - 0.953 0.981 - -
54. AKT3 AKT3 1729 2.788 - - - - - 0.924 0.961 - 0.903
55. ROBO3_1 ROBO3_1 468 2.771 - 0.893 - - - 0.967 0.911 - -
56. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.763 0.902 - - - - 0.922 0.939 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
57. cnrip1a ENSDARG00000091683 1491 2.754 - - - - - 0.931 0.933 0.890 - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
58. pcbp3 ENSDARG00000054378 74 2.751 - 1.000 - - - 0.759 0.992 - - poly(rC) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-157]
59. SNAP91 ENSDARG00000098809 556 2.741 - - - - - 0.962 0.987 - 0.792 synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
60. rab3ab ENSDARG00000043835 1267 2.729 0.819 - - - - 0.936 0.974 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
61. amph ENSDARG00000007663 599 2.727 0.915 - - - - 0.891 0.921 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
62. st8sia5 ENSDARG00000036584 529 2.725 - - - - - 0.942 0.972 - 0.811 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
63. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.724 0.878 - - - - 0.938 0.908 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
64. LINGO2 LINGO2 300 2.722 - 0.880 - - - 0.905 0.937 - -
65. cdk5r1b ENSDARG00000045087 2075 2.722 0.951 - - - - 0.803 0.968 - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
66. nptx1l ENSDARG00000074671 569 2.719 0.854 - - - - 0.973 0.892 - - neuronal pentraxin 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2418]
67. sez6l2 ENSDARG00000076052 360 2.719 0.764 - - - - 0.990 0.965 - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
68. st18 663 2.718 - - - - - 0.957 0.889 0.872 - suppression of tumorigenicity 18, zinc finger
69. necap1 ENSDARG00000020798 612 2.716 0.812 - - - - 0.943 0.961 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
70. LMTK3 LMTK3 222 2.707 - 1.000 - - - - 0.901 0.806 -
71. slc32a1 ENSDARG00000059775 1092 2.707 0.808 - - - - 0.959 0.940 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
72. MAPK8IP1_1 MAPK8IP1_1 186 2.707 0.897 - - - - 0.895 0.915 - -
73. adam23a ENSDARG00000062323 580 2.7 0.873 - - - - 0.936 0.891 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
74. gabra5 ENSDARG00000070730 156 2.694 0.824 - - - - 0.918 0.952 - - gamma-aminobutyric acid (GABA) A receptor, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-081104-30]
75. MAP1A MAP1A 847 2.69 0.838 - - - - 0.945 0.907 - -
76. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.686 0.766 - - - - 0.973 0.947 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
77. dpysl3 ENSDARG00000002587 4381 2.684 0.912 - - - - 0.825 0.947 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
78. elavl4 ENSDARG00000045639 998 2.681 0.909 0.794 - - - - 0.978 - - ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
79. si:ch73-21g5.7 ENSDARG00000093156 9412 2.68 - - - - - 0.904 0.930 0.846 - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
80. adam11 ENSDARG00000079204 298 2.67 0.960 - - - - 0.882 0.828 - - ADAM metallopeptidase domain 11 [Source:ZFIN;Acc:ZDB-GENE-070808-3]
81. BX957337.1 BX957337.1 1685 2.667 - - - 0.764 - 0.957 0.946 - -
82. BX470131.1 BX470131.1 86 2.666 - 1.000 - - - 0.719 0.947 - -
83. stx1b ENSDARG00000000503 2724 2.664 0.807 - - - - 0.890 0.967 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
84. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 2.664 - - - - - 0.868 0.887 0.909 - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
85. TPPP2 ENSDARG00000035338, ENSDARG00000113727 298 2.657 0.766 - - - - 0.949 0.942 - - tubulin polymerization-promoting protein family member 2 [Source:ZFIN;Acc:ZDB-GENE-140106-24]
86. upf3a ENSDARG00000069297, ENSDARG00000111067 196 2.657 0.783 - - - - 0.921 0.953 - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
87. mapk12b ENSDARG00000006409 2246 2.655 0.792 - - - - 0.926 0.937 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
88. zic4 ENSDARG00000031307 1228 2.652 0.886 - - - - 0.951 0.815 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
89. tuba2 ENSDARG00000045014 1490 2.643 0.832 - - - - 0.920 0.891 - - tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
90. sh3gl2 sh3gl2 1305 2.642 0.788 - - - - 0.928 0.926 - -
91. st8sia2 ENSDARG00000018788 2183 2.641 - - - - - 0.875 0.917 - 0.849 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
92. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 2.638 - - - - - 0.977 0.870 0.791 - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
93. cacng8b ENSDARG00000070626 176 2.635 - 0.794 - - - 0.856 0.985 - - calcium channel, voltage-dependent, gamma subunit 8b [Source:ZFIN;Acc:ZDB-GENE-100921-72]
94. ppp3ca ENSDARG00000004988 615 2.631 0.814 - - - - 0.923 0.894 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
95. scn8aa ENSDARG00000005775 792 2.63 0.856 - - - - 0.906 0.868 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
96. slc1a3a ENSDARG00000104431 9888 2.629 0.875 - - - - 0.951 0.803 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
97. gad1b ENSDARG00000027419 440 2.623 - 1.000 - - - - 0.806 - 0.817 glutamate decarboxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030909-3]
98. eno2 ENSDARG00000014287 2162 2.622 0.788 - - - - 0.936 0.898 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
99. nrxn1a ENSDARG00000061647, ENSDARG00000111866 1069 2.622 0.760 - - - - 0.968 0.894 - - neurexin 1a [Source:ZFIN;Acc:ZDB-GENE-070206-1]
100. olfm1b ENSDARG00000014053 1392 2.62 0.725 - - - - 0.951 0.944 - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]

There are 2727 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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