Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lhx4

Gene Name Gene ID Reads Annotation
lhx4 ENSDARG00000039458 328 LIM homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-060728-1]










Genes with expression patterns similar to lhx4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lhx4 ENSDARG00000039458 328 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-060728-1]
2. tmem35 ENSDARG00000052567 5685 2.68 - 0.851 - - - 0.848 0.981 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
3. pou3f3a ENSDARG00000042032 2835 2.574 - 0.823 - - - 0.823 0.928 - - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
4. mnx1 ENSDARG00000035984, ENSDARG00000109419 1014 2.463 - 0.710 - - - 0.867 0.886 - - motor neuron and pancreas homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040409-1]
5. mnx2a ENSDARG00000042106 939 2.43 - 0.722 - - - 0.754 0.954 - - motor neuron and pancreas homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040415-1]
6. rhbdl3 ENSDARG00000105190, ENSDARG00000112687, ENSDARG00000116222 977 1.92 - - - - - 0.946 0.974 - - rhomboid, veinlet-like 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050417-2]
7. chga ENSDARG00000008829 1086 1.889 - - - - - 0.929 0.960 - - chromogranin A [Source:ZFIN;Acc:ZDB-GENE-041010-161]
8. nkx6.2 ENSDARG00000104735 5081 1.884 - - - - - 0.929 0.955 - - NK6 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-070626-1]
9. jph3 ENSDARG00000102204 175 1.873 - - - - - 0.946 0.927 - - junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
10. im:7162084 im:7162084 665 1.87 - - - - - 0.909 0.961 - -
11. ADAM22 ENSDARG00000060532 2259 1.865 - 0.882 - - - - 0.983 - - ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
12. SLC5A7 SLC5A7 453 1.85 - - - - - 0.899 0.951 - -
13. hectd2 ENSDARG00000061194 559 1.846 - - - - - 0.946 0.900 - - HECT domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100405-3]
14. calca ENSDARG00000056590 150 1.841 - - - - - 0.876 0.965 - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
15. sst1.1 ENSDARG00000040799 677 1.835 - - - - - 0.945 0.890 - - somatostatin 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4743]
16. CABZ01080599.2 CABZ01080599.2 192 1.834 - - - - - 0.867 0.967 - -
17. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 1.832 - - - - - 0.871 0.961 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
18. neurog1 ENSDARG00000056130 3924 1.829 - - - - - 0.854 0.975 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
19. si:dkey-169l5.3 si:dkey-169l5.3 239 1.828 - - - - - 0.879 0.949 - -
20. chat chat 463 1.825 - - - - - 0.862 0.963 - -
21. tmie ENSDARG00000069423 305 1.822 - - - - - 0.888 0.934 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
22. cdh7 582 1.82 - - - - - 0.849 0.971 - - cadherin 7, type 2, transcript variant X1
23. CU928222.1 ENSDARG00000097436 1662 1.82 - - - - - 0.843 0.977 - -
24. dlg4 88 1.816 - - - - - 0.913 0.903 - - discs large MAGUK scaffold protein 4, transcript variant X5
25. chrna2b ENSDARG00000057025 217 1.807 - - - - - 0.912 0.895 - - cholinergic receptor, nicotinic, alpha 2b (neuronal) [Source:ZFIN;Acc:ZDB-GENE-041001-99]
26. CR848045.1 CR848045.1 459 1.807 - - - - - 0.850 0.957 - -
27. her4.3 ENSDARG00000070770 613 1.806 - - - - - 0.816 0.990 - - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
28. BX511121.1 ENSDARG00000029997 1774 1.805 - - - - - 0.829 0.976 - -
29. ADAMTS3 ENSDARG00000060127 2839 1.804 - - - - - 0.844 0.960 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
30. cdk5r2a ENSDARG00000071011 167 1.792 - - - - - 0.872 0.920 - - cyclin-dependent kinase 5, regulatory subunit 2a (p39) [Source:ZFIN;Acc:ZDB-GENE-050417-22]
31. elavl3 ENSDARG00000014420 8644 1.791 - - - - - 0.806 0.985 - - ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
32. chrna2a ENSDARG00000006602 163 1.776 - - - - - 0.869 0.907 - - cholinergic receptor, nicotinic, alpha 2a (neuronal) [Source:ZFIN;Acc:ZDB-GENE-040108-2]
33. nkx6.1 ENSDARG00000022569 3779 1.773 - - - - - 0.813 0.960 - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
34. sv2bb ENSDARG00000060711 196 1.773 - - - - - 0.825 0.948 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
35. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 1.766 - - - - - 0.806 0.960 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
36. syt12 ENSDARG00000101776 215 1.764 - - - - - 0.842 0.922 - - synaptotagmin XII [Source:ZFIN;Acc:ZDB-GENE-081022-147]
37. ptprnb ENSDARG00000077047 2743 1.761 - - - - - 0.855 0.906 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
38. CABZ01029738.1 CABZ01029738.1 327 1.759 - - - - - 0.803 0.956 - -
39. her4.2 ENSDARG00000056729, ENSDARG00000094426 289 1.759 - - - - - 0.845 0.914 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
40. prdm8 ENSDARG00000025017 370 1.759 - - - - - 0.835 0.924 - - PR domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2747]
41. C8H1orf106 C8H1orf106 2690 1.755 - - - - - 0.803 0.952 - -
42. si:ch73-265d7.2 ENSDARG00000116713 2142 1.753 - - - - - 0.824 0.929 - - si:ch73-265d7.2 [Source:ZFIN;Acc:ZDB-GENE-100922-146]
43. ENTHD1 ENTHD1 235 1.743 - - - - - 0.809 0.934 - -
44. nes ENSDARG00000088805 2710 1.743 - - - - - 0.752 0.991 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
45. ctnnd2b ENSDARG00000003779 964 1.743 - - - - - 0.784 0.959 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
46. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 1.743 - - - - - 0.771 0.972 - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
47. SSX2IP SSX2IP 316 1.74 - - - - - 0.791 0.949 - -
48. her15.1 ENSDARG00000054560, ENSDARG00000054562 1500 1.74 - - - - - 0.768 0.972 - - hairy and enhancer of split-related 15, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030707-2]
49. her2 ENSDARG00000038205 3219 1.739 - - - - - 0.775 0.964 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
50. GADD45G GADD45G 382 1.735 - - - - - 0.777 0.958 - -
51. nhlh2 ENSDARG00000025495 1860 1.729 - - - - - 0.754 0.975 - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
52. chrm3a ENSDARG00000071091 72 1.728 - - - - - 0.851 0.877 - - cholinergic receptor, muscarinic 3a [Source:ZFIN;Acc:ZDB-GENE-090410-4]
53. CABZ01111990.1 CABZ01111990.1 4374 1.728 - - - - - 0.779 0.949 - -
54. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 1.728 - - - - - 0.768 0.960 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
55. nadl1.1 1200 1.727 - - - - - 0.742 0.985 - - neural adhesion molecule L1.1, transcript variant X1
56. slc18a3a ENSDARG00000006356 1285 1.727 - - - - - 0.754 0.973 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
57. sox19b ENSDARG00000040266 532 1.724 - - - - - 0.797 0.927 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
58. dync1i1 ENSDARG00000060948 554 1.724 - - - - - 0.763 0.961 - - dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
59. gdf11 ENSDARG00000044924 534 1.722 - - - - - 0.794 0.928 - - growth differentiation factor 11 [Source:ZFIN;Acc:ZDB-GENE-040427-2]
60. kif5c ENSDARG00000076027 424 1.72 - - - - - 0.801 0.919 - - kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
61. her12 ENSDARG00000032963 754 1.717 - - - - - 0.785 0.932 - - hairy-related 12 [Source:ZFIN;Acc:ZDB-GENE-040824-5]
62. pkd1b ENSDARG00000033029 461 1.717 - - - - - 0.841 0.876 - - polycystic kidney disease 1b [Source:ZFIN;Acc:ZDB-GENE-100707-2]
63. AL935029.1 AL935029.1 514 1.715 - - - - - 0.743 0.972 - -
64. msi1 ENSDARG00000010710 2634 1.712 - - - - - 0.773 0.939 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
65. her8.2 ENSDARG00000069675 315 1.712 - - - - - 0.746 0.966 - - hairy-related 8.2 [Source:ZFIN;Acc:ZDB-GENE-060815-4]
66. chodl ENSDARG00000034528, ENSDARG00000109583, ENSDARG00000111154 1306 1.71 - - - - - 0.898 0.812 - - chondrolectin [Source:ZFIN;Acc:ZDB-GENE-050417-36]
67. gabrg2 ENSDARG00000053665 434 1.708 - - - - - 0.796 0.912 - - gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-091118-65]
68. sv2c ENSDARG00000059997 592 1.708 - - - - - 0.758 0.950 - - synaptic vesicle glycoprotein 2C [Source:ZFIN;Acc:ZDB-GENE-060526-233]
69. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 1.707 - - - - - 0.789 0.918 - - visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
70. C5H5orf34 C5H5orf34 69 1.704 - - - - - 0.814 0.890 - -
71. TRIM46 TRIM46 73 1.701 - - - - - 0.793 0.908 - -
72. FUT9 FUT9 91 1.699 - - - - - 0.793 0.906 - -
73. necap1 ENSDARG00000020798 612 1.699 - 0.740 - - - - 0.959 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
74. AGO1 ENSDARG00000092644 4521 1.697 - - - - - 0.761 0.936 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
75. eno2 ENSDARG00000014287 2162 1.697 - 0.714 - - - - 0.983 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
76. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 1.691 - - - - - 0.772 0.919 - - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
77. zgc:113531 ENSDARG00000038794 2063 1.69 - - - - - 0.800 0.890 - - zgc:113531 [Source:ZFIN;Acc:ZDB-GENE-050320-52]
78. CDK5R1 CDK5R1 562 1.69 - - - - - 0.790 0.900 - -
79. mir124-2 196 1.689 - - - - - 0.761 0.928 - - microRNA 124-2
80. nova2 ENSDARG00000017673 7685 1.689 - - - - - 0.718 0.971 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
81. myo16 ENSDARG00000078582 714 1.686 - - - - - 0.789 0.897 - - myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
82. celf4 ENSDARG00000070045 1537 1.686 - - - - - 0.703 0.983 - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
83. lhfpl4a ENSDARG00000111810 206 1.681 - - - - - 0.863 0.818 - - lipoma HMGIC fusion partner-like 4a [Source:ZFIN;Acc:ZDB-GENE-111017-1]
84. scg2a 800 1.679 - - - - - 0.780 0.899 - - secretogranin II (chromogranin C) a
85. tmem240 tmem240 180 1.678 - - - - - 0.841 0.837 - -
86. epb41a ENSDARG00000099283 860 1.678 - - - - - 0.762 0.916 - - erythrocyte membrane protein band 4.1a [Source:ZFIN;Acc:ZDB-GENE-070705-81]
87. STMN3 ENSDARG00000038465 1009 1.673 - - - - - 0.738 0.935 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
88. nell2b ENSDARG00000062797 854 1.673 - - - - - 0.748 0.925 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
89. sall3b ENSDARG00000057586 982 1.666 - 0.709 - - - - 0.957 - - spalt-like transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9140]
90. faxcb ENSDARG00000078981 249 1.661 - 0.732 - - - - 0.929 - - failed axon connections homolog b [Source:ZFIN;Acc:ZDB-GENE-100922-19]
91. btbd3b ENSDARG00000087517 107 1.66 - - - - - 0.740 0.920 - - BTB (POZ) domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-041210-282]
92. gpr186 ENSDARG00000094860 53 1.66 - - - - - 0.826 0.834 - - G protein-coupled receptor 186 [Source:ZFIN;Acc:ZDB-GENE-060503-489]
93. vim ENSDARG00000010008 3551 1.656 - - - - - 0.735 0.921 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
94. fabp7a ENSDARG00000007697 5211 1.653 - - - - - 0.800 0.853 - - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
95. fyna ENSDARG00000011370 1679 1.653 - - - - - 0.774 0.879 - - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
96. EPB41L1 EPB41L1 1896 1.651 - - - - - 0.749 0.902 - -
97. sema3c ENSDARG00000034300 881 1.651 - - - - - 0.713 0.938 - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:ZFIN;Acc:ZDB-GENE-050513-5]
98. si:ch211-247j9.1 ENSDARG00000079283 217 1.65 - - - - - 0.814 0.836 - - si:ch211-247j9.1 [Source:ZFIN;Acc:ZDB-GENE-091204-212]
99. pkd2l1 ENSDARG00000022503 372 1.649 - - - - - 0.835 0.814 - - polycystic kidney disease 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-030616-558]
100. pax6b ENSDARG00000045936 349 1.648 - - - - - 0.754 0.894 - - paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]

There are 1327 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA