Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lhx1b

Gene Name Gene ID Reads Annotation
lhx1b ENSDARG00000007944, ENSDARG00000111635 254 LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]










Genes with expression patterns similar to lhx1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
2. GADD45G_1 GADD45G_1 236 4.171 0.793 0.880 - - - 0.852 0.907 0.739 -
3. bhlhe22 ENSDARG00000058039 1673 3.452 0.777 0.832 - - - 0.933 0.910 - - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
4. her4.3 ENSDARG00000070770 613 3.391 0.740 - - - - 0.975 0.941 0.735 - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
5. GLRA3 ENSDARG00000011066 242 3.387 0.815 0.884 - - - 0.784 0.904 - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
6. lhx5 ENSDARG00000057936 785 3.373 0.790 0.880 - - - - 0.956 0.747 - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
7. sv2bb ENSDARG00000060711 196 3.315 0.881 0.703 - - - 0.840 0.891 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
8. MCTP1 MCTP1 219 3.282 0.907 0.764 - - - 0.789 0.822 - -
9. LMTK3 LMTK3 222 3.273 - 0.880 - - - 0.857 0.774 0.762 -
10. C8H1orf106 C8H1orf106 2690 3.245 0.770 0.720 - - - 0.979 0.776 - -
11. lhfpl4a ENSDARG00000111810 206 3.202 0.898 0.762 - - - 0.817 0.725 - - lipoma HMGIC fusion partner-like 4a [Source:ZFIN;Acc:ZDB-GENE-111017-1]
12. ptprnb ENSDARG00000077047 2743 3.189 0.818 0.724 - - - 0.752 0.895 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
13. cadm3 ENSDARG00000057013 1545 3.186 0.712 0.869 - - - 0.774 0.831 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
14. ZFHX3 ENSDARG00000103057 7759 3.162 0.796 - - - - 0.775 0.811 0.780 - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
15. rap2ip rap2ip 681 3.152 - 0.783 - - - 0.718 0.935 0.716 -
16. scrt2 ENSDARG00000056175 4331 3.134 0.898 0.746 - - - 0.752 0.738 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
17. pcdh1gc5 ENSDARG00000104826 10052 3.115 0.727 0.731 - - - 0.735 0.922 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
18. gap43 ENSDARG00000099744 4114 3.074 0.765 - - - - 0.742 0.835 0.732 - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
19. slc1a2b ENSDARG00000102453 3136 3.053 0.740 0.709 - - - 0.805 0.799 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
20. adcyap1b ENSDARG00000027740 1539 2.973 0.791 - - - - 0.728 0.751 0.703 - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
21. nhlh2 ENSDARG00000025495 1860 2.842 - 0.940 - - - 0.984 0.918 - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
22. slc35g2b ENSDARG00000045447 378 2.761 - 0.922 - - - 0.911 0.928 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
23. neurog1 ENSDARG00000056130 3924 2.691 - 0.847 - - - 0.956 0.888 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
24. cdk5r2a ENSDARG00000071011 167 2.681 0.931 - - - - 0.750 1.000 - - cyclin-dependent kinase 5, regulatory subunit 2a (p39) [Source:ZFIN;Acc:ZDB-GENE-050417-22]
25. itm2ca ENSDARG00000043448 1265 2.671 - 0.795 - - - 0.921 0.955 - - integral membrane protein 2Ca [Source:ZFIN;Acc:ZDB-GENE-040718-284]
26. calca ENSDARG00000056590 150 2.666 - 0.823 - - - 0.907 0.936 - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
27. dbx2 2971 2.665 - 0.819 - - - 0.937 0.909 - - developing brain homeobox 2
28. sox19b ENSDARG00000040266 532 2.657 - 0.865 - - - 0.939 0.853 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
29. EPB41L1 EPB41L1 1896 2.654 0.804 - - - - 0.971 0.879 - -
30. celf4 ENSDARG00000070045 1537 2.641 0.797 - - - - 0.915 0.929 - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
31. elavl3 ENSDARG00000014420 8644 2.638 - - - - - 0.973 0.901 0.764 - ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
32. slc8a2b ENSDARG00000100592 598 2.634 0.805 - - - - 0.959 0.870 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
33. mb21d2a mb21d2a 421 2.631 - 0.950 - - - 0.908 0.773 - -
34. pax6a ENSDARG00000103379 3061 2.63 - 0.893 - - - 0.922 0.815 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
35. GADD45G GADD45G 382 2.63 0.783 - - - - 0.880 0.967 - -
36. mapk11 ENSDARG00000045836 846 2.61 0.973 - - - - 0.908 0.729 - - mitogen-activated protein kinase 11 [Source:ZFIN;Acc:ZDB-GENE-040625-75]
37. nell2b ENSDARG00000062797 854 2.609 - - - - - 0.955 0.856 0.798 - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
38. LINGO2 LINGO2 300 2.597 0.724 1.000 - - - - 0.873 - -
39. phactr3a ENSDARG00000058243 150 2.597 0.894 - - - - 0.837 0.866 - - phosphatase and actin regulator 3a [Source:ZFIN;Acc:ZDB-GENE-080220-4]
40. CR848045.1 CR848045.1 459 2.591 - 0.758 - - - 0.901 0.932 - -
41. nes ENSDARG00000088805 2710 2.584 - 0.790 - - - 0.884 0.910 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
42. cadpsb ENSDARG00000070567 458 2.583 0.786 - - - - 0.886 0.911 - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
43. cspg5a ENSDARG00000069981 1699 2.581 0.732 - - - - 0.924 0.925 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
44. elavl4 ENSDARG00000045639 998 2.572 0.716 - - - - 0.924 0.932 - - ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
45. lrrtm1 ENSDARG00000052713 1041 2.571 0.864 - - - - 0.904 0.803 - - leucine rich repeat transmembrane neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-050506-80]
46. SPOCK1 ENSDARG00000074644 794 2.566 - - - - - 0.929 0.902 0.735 - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
47. CABZ01111990.1 CABZ01111990.1 4374 2.564 - - - - - 0.947 0.871 0.746 -
48. AGO1 ENSDARG00000092644 4521 2.56 0.847 - - - - 0.919 0.794 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
49. nadl1.1 1200 2.555 0.706 - - - - 0.891 0.958 - - neural adhesion molecule L1.1, transcript variant X1
50. ctnnd2b ENSDARG00000003779 964 2.554 0.729 - - - - 0.962 0.863 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
51. cdk5r1b ENSDARG00000045087 2075 2.548 0.747 - - - - 0.925 0.876 - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
52. sult4a1 ENSDARG00000101967 205 2.548 0.735 - - - - 0.933 0.880 - - sulfotransferase family 4A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060421-2705]
53. dbx1a ENSDARG00000086393 3161 2.544 - 0.881 - - - 0.848 0.815 - - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
54. cacng2a ENSDARG00000032565 99 2.542 - 0.880 - - - 0.753 0.909 - - calcium channel, voltage-dependent, gamma subunit 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1401]
55. msi1 ENSDARG00000010710 2634 2.536 0.792 - - - - 0.907 0.837 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
56. adam23a ENSDARG00000062323 580 2.535 0.860 - - - - 0.755 0.920 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
57. draxin ENSDARG00000058256, ENSDARG00000111676 266 2.531 0.809 0.846 - - - 0.876 - - - dorsal inhibitory axon guidance protein [Source:ZFIN;Acc:ZDB-GENE-050913-20]
58. sprn ENSDARG00000056004 128 2.527 - - - - - 0.852 0.935 0.740 - shadow of prion protein [Source:ZFIN;Acc:ZDB-GENE-031110-1]
59. PRR12 PRR12 38 2.517 - 0.880 - - - 0.861 0.776 - -
60. tmem35 ENSDARG00000052567 5685 2.516 0.720 - - - - 0.927 0.869 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
61. rhbdl3 ENSDARG00000105190, ENSDARG00000112687, ENSDARG00000116222 977 2.515 - 0.848 - - - 0.723 0.944 - - rhomboid, veinlet-like 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050417-2]
62. tmem59l ENSDARG00000003655 1536 2.507 0.730 - - - - 0.907 0.870 - - transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
63. slc18a3a ENSDARG00000006356 1285 2.505 - 0.724 - - - 0.879 0.902 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
64. epha4b ENSDARG00000011600 3110 2.501 0.727 - - - - 0.896 0.878 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
65. cdh4 ENSDARG00000015002, ENSDARG00000110803, ENSDARG00000110870 97 2.5 - - 0.729 - - 0.828 0.943 - - cadherin 4, type 1, R-cadherin (retinal) [Source:ZFIN;Acc:ZDB-GENE-991207-1]
66. C7H4orf48 C7H4orf48 1455 2.499 0.843 - - - - - 0.905 0.751 -
67. dpysl3 ENSDARG00000002587 4381 2.499 0.710 - - - - 0.906 0.883 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
68. atp2b2 ENSDARG00000044902, ENSDARG00000063433 140 2.498 - 0.880 - - - 0.911 0.707 - - ATPase plasma membrane Ca2+ transporting 2 [Source:ZFIN;Acc:ZDB-GENE-061016-1]
69. lhx1a ENSDARG00000014018 958 2.496 - 0.787 - - - 0.868 0.841 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
70. kcnc3a ENSDARG00000055855 1821 2.491 0.747 - - - - 0.860 0.884 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
71. TMEM57 TMEM57 260 2.49 - 0.880 - - - - 0.836 0.774 -
72. UBE2QL1 ENSDARG00000079276 3474 2.49 0.842 - - - - 0.849 0.799 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
73. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.489 0.746 - - - - 0.918 0.825 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
74. dnajc5aa ENSDARG00000042948 2885 2.484 0.746 - - - - 0.928 0.810 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
75. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.48 - - - - - 0.942 0.799 0.739 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
76. pdzd4 175 2.478 - 0.880 - - - 0.862 0.736 - - PDZ domain containing 4, transcript variant X2
77. aatkb ENSDARG00000104442 392 2.47 0.742 0.880 - - - - 0.848 - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
78. stx1b ENSDARG00000000503 2724 2.467 0.740 - - - - 0.847 0.880 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
79. TUBB8P7_1 TUBB8P7_1 2722 2.466 0.704 - - - - 0.787 0.975 - -
80. sept5a ENSDARG00000013843 1206 2.461 0.782 - - - - 0.783 0.896 - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
81. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 2.46 0.806 0.836 - - - - 0.818 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
82. rab39b rab39b 449 2.459 - - - - - 0.900 0.851 0.708 -
83. tuba1c ENSDARG00000055216 8384 2.458 0.742 - - - - 0.818 0.898 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
84. snap25a ENSDARG00000020609 4537 2.455 0.773 - - - - 0.793 0.889 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
85. mir10d-1 mir10d-1 860 2.446 0.724 0.848 - - - - 0.874 - -
86. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 2.439 0.859 - - - - 0.775 - 0.805 - zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
87. FGFBP3 FGFBP3 993 2.439 0.735 - - - - 0.920 0.784 - -
88. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 2.434 - - - - - 0.826 0.837 0.771 - cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
89. GRM8_1 GRM8_1 85 2.433 0.735 - - - - 0.837 0.861 - -
90. clvs2 ENSDARG00000053122 1390 2.43 0.740 - - - - - 0.941 0.749 - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
91. CABZ01029738.1 CABZ01029738.1 327 2.425 - 0.837 - - - 0.817 0.771 - -
92. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 2.415 - - - - - 0.811 0.861 0.743 - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
93. nlgn3b ENSDARG00000062376 171 2.414 0.737 - - - - 0.833 0.844 - - neuroligin 3b [Source:ZFIN;Acc:ZDB-GENE-060526-197]
94. pou4f1 ENSDARG00000005559 821 2.411 0.718 - - - - 0.759 0.934 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
95. chrna6 ENSDARG00000055559 60 2.408 - 0.880 - - - 0.811 0.717 - - cholinergic receptor, nicotinic, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-090312-91]
96. ppp1r14ab ENSDARG00000017710, ENSDARG00000110779 3296 2.407 0.709 - - - - 0.960 0.738 - - protein phosphatase 1, regulatory (inhibitor) subunit 14Ab [Source:ZFIN;Acc:ZDB-GENE-040426-1783]
97. ARHGAP22 ENSDARG00000076434 1406 2.4 0.739 - - - - 0.922 - 0.739 - Rho GTPase activating protein 22 [Source:HGNC Symbol;Acc:HGNC:30320]
98. sez6l ENSDARG00000100594 35 2.391 0.735 0.880 - - - - 0.776 - - seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
99. gfap ENSDARG00000025301 5584 2.39 0.705 - - - - 0.787 0.898 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
100. rab3ab ENSDARG00000043835 1267 2.383 0.727 - - - - 0.744 0.912 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]

There are 2155 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA