Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lgi3

Gene Name Gene ID Reads Annotation
lgi3 ENSDARG00000041358 46 leucine-rich repeat LGI family, member 3 [Source:ZFIN;Acc:ZDB-GENE-060217-4]










Genes with expression patterns similar to lgi3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lgi3 ENSDARG00000041358 46 8 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 leucine-rich repeat LGI family, member 3 [Source:ZFIN;Acc:ZDB-GENE-060217-4]
2. nxph1 ENSDARG00000033447 182 2.769 - 0.946 - - - 0.961 0.862 - - neurexophilin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-231]
3. TTBK1_1 TTBK1_1 132 2.741 - 0.903 - - - 0.937 0.901 - -
4. sept5b ENSDARG00000036031 188 2.65 - 1.000 - - - 0.844 0.806 - - septin 5b [Source:ZFIN;Acc:ZDB-GENE-040808-43]
5. SLITRK4 ENSDARG00000079781 54 2 - 1.000 - - - - 1.000 - - SLIT and NTRK-like family, member 4 [Source:ZFIN;Acc:ZDB-GENE-140303-1]
6. ATP6AP1L ATP6AP1L 164 1.964 - 1.000 - - - - 0.964 - -
7. KCNAB3 KCNAB3 134 1.927 - 1.000 - - - - 0.927 - -
8. st8sia5 ENSDARG00000036584 529 1.926 - - - - - 0.947 0.979 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
9. atl1 ENSDARG00000060481 251 1.923 - 1.000 - - - 0.923 - - - atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]
10. si:dkey-163m14.10 si:dkey-163m14.10 33 1.918 - 1.000 - - - 0.918 - - -
11. zic3 ENSDARG00000071497 1448 1.912 - - - - - 0.968 0.944 - - zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030708-2]
12. syn2a ENSDARG00000045945 434 1.909 - - - - - 0.955 0.954 - - synapsin IIa [Source:ZFIN;Acc:ZDB-GENE-040718-341]
13. cacng8a ENSDARG00000020450 32 1.898 - - - - - 0.958 0.940 - - calcium channel, voltage-dependent, gamma subunit 8a [Source:ZFIN;Acc:ZDB-GENE-050417-239]
14. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 1.895 - - - - - 0.919 0.976 - - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
15. CR538726.1 ENSDARG00000097179 321 1.895 - 1.000 - - - - 0.895 - -
16. CR377211.1 ENSDARG00000079364 24 1.894 - 1.000 - - - 0.894 - - - olfactory receptor 2T2-like [Source:NCBI gene;Acc:103910036]
17. KCNIP4 ENSDARG00000088100 86 1.891 - - - - - 0.977 0.914 - - potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
18. st6gal1 ENSDARG00000044514 142 1.89 - - - - - 0.941 0.949 - - ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:ZFIN;Acc:ZDB-GENE-060322-3]
19. slc1a1 ENSDARG00000020212 104 1.883 - 1.000 - - - 0.883 - - - solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 [Source:ZFIN;Acc:ZDB-GENE-040718-414]
20. rdh12 ENSDARG00000018069 396 1.882 - - - - - 0.952 0.930 - - retinol dehydrogenase 12 [Source:ZFIN;Acc:ZDB-GENE-040718-9]
21. dnajc6 ENSDARG00000079891 438 1.876 - - - - - 0.907 0.969 - - DnaJ (Hsp40) homolog, subfamily C, member 6 [Source:ZFIN;Acc:ZDB-GENE-080104-2]
22. AL929252.1 AL929252.1 81 1.876 - - - - - 0.876 1.000 - -
23. kcnn1a ENSDARG00000091306 95 1.874 - - - - - 0.918 0.956 - - potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1a [Source:ZFIN;Acc:ZDB-GENE-070912-703]
24. CR388231.1 ENSDARG00000098710 153 1.87 - - - - - 0.964 0.906 - -
25. ksr2 ENSDARG00000094526 134 1.869 - - - - - 0.966 0.903 - - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
26. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 1.856 - - - - - 0.935 0.921 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
27. cbln1 ENSDARG00000057296 165 1.852 - - - - - 0.958 0.894 - - cerebellin 1 precursor [Source:ZFIN;Acc:ZDB-GENE-040718-226]
28. fam228a ENSDARG00000042936, ENSDARG00000114092 30 1.841 - 1.000 - - - - 0.841 - - family with sequence similarity 228, member A [Source:ZFIN;Acc:ZDB-GENE-041014-83]
29. CIT_1 CIT_1 6 1.841 - 1.000 - - - - 0.841 - -
30. CNTNAP3 ENSDARG00000067824 25 1.841 - 1.000 - - - - 0.841 - - contactin associated protein like 3 [Source:ZFIN;Acc:ZDB-GENE-091113-51]
31. PPFIA3 ENSDARG00000077053 310 1.834 - - - - - 0.927 0.907 - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 [Source:ZFIN;Acc:ZDB-GENE-100311-3]
32. nexmifb ENSDARG00000029296 416 1.828 - - - - - 0.912 0.916 - - neurite extension and migration factor b [Source:ZFIN;Acc:ZDB-GENE-140106-18]
33. upf3a ENSDARG00000069297, ENSDARG00000111067 196 1.825 - - - - - 0.878 0.947 - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
34. atpv0e2 ENSDARG00000059057 585 1.82 - - - - - 0.962 0.858 - - ATPase H+ transporting V0 subunit e2 [Source:ZFIN;Acc:ZDB-GENE-050522-135]
35. UBL7 UBL7 197 1.815 - - - - - 0.936 0.879 - -
36. TRPC4_1 TRPC4_1 212 1.812 - - - - - 0.971 0.841 - -
37. atp2b3b ENSDARG00000023445 1424 1.809 - - - - - 0.879 0.930 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
38. bsk146 ENSDARG00000099069 274 1.808 - - - - - 0.955 0.853 - - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
39. LINGO2 LINGO2 300 1.806 - - - - - 0.974 0.832 - -
40. si:dkey-100n10.2 101 1.803 - - - - - 0.945 0.858 - - si:dkey-100n10.2
41. scn1lab ENSDARG00000062744 155 1.803 - - - - - 0.863 0.940 - - sodium channel, voltage-gated, type I like, alpha b [Source:ZFIN;Acc:ZDB-GENE-060906-1]
42. her15.2 her15.2 1701 1.803 - - - - - 0.919 0.884 - -
43. nptx1l ENSDARG00000074671 569 1.799 - - - - - 0.921 0.878 - - neuronal pentraxin 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2418]
44. sox2 ENSDARG00000070913 2763 1.794 - - - - - 0.921 0.873 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
45. kif3cb ENSDARG00000079500 935 1.789 - - - - - 0.948 0.841 - - kinesin family member 3Cb [Source:ZFIN;Acc:ZDB-GENE-080709-4]
46. pcsk1nl ENSDARG00000076170 1232 1.788 - - - - - 0.851 0.937 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
47. MAP6 MAP6 643 1.788 - - - - - 0.841 0.947 - -
48. dpysl4 ENSDARG00000103490 534 1.785 - - - - - 0.933 0.852 - - dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
49. cnrip1a ENSDARG00000091683 1491 1.785 - - - - - 0.953 0.832 - - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
50. tnika ENSDARG00000056218 728 1.782 - - - - - 0.922 0.860 - - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
51. lhx5 ENSDARG00000057936 785 1.782 - - - - - 0.862 0.920 - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
52. CLIP3 ENSDARG00000054456 734 1.776 - - - - - 0.943 0.833 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
53. slc6a1b ENSDARG00000039647 1301 1.775 - - - - - 0.939 0.836 - - solute carrier family 6 (neurotransmitter transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-041114-57]
54. cers6 ENSDARG00000053583 247 1.772 - - - - - 0.843 0.929 - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
55. EML6 250 1.77 - - - - - 0.820 0.950 - - echinoderm microtubule associated protein like 6
56. stmn1b ENSDARG00000033655 9491 1.764 - - - - - 0.924 0.840 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
57. pkib ENSDARG00000053110 527 1.764 - - - - - 0.937 0.827 - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:ZFIN;Acc:ZDB-GENE-041014-312]
58. shisa7 shisa7 181 1.764 - - - - - 0.841 0.923 - -
59. slc25a6 ENSDARG00000005853, ENSDARG00000113366 99 1.762 - - - - - 0.853 0.909 - - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Source:ZFIN;Acc:ZDB-GENE-070912-446]
60. st18 663 1.762 - - - - - 0.860 0.902 - - suppression of tumorigenicity 18, zinc finger
61. dhrs13l1 ENSDARG00000098746 102 1.755 - 1.000 - - - 0.755 - - - dehydrogenase/reductase (SDR family) member 13 like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1907]
62. si:ch211-133l11.10 ENSDARG00000005626 381 1.753 - - - - - 0.896 0.857 - - si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
63. sez6l2 ENSDARG00000076052 360 1.751 - - - - - 0.867 0.884 - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
64. TTYH1 ENSDARG00000076804 399 1.75 - - - - - 0.885 0.865 - - tweety family member 1 [Source:ZFIN;Acc:ZDB-GENE-100922-257]
65. gpr144 gpr144 479 1.747 - - - - - 0.818 0.929 - -
66. C7H4orf48 C7H4orf48 1455 1.746 - - - - - 0.842 0.904 - -
67. C19H7orf41 C19H7orf41 2243 1.743 - - - - - 0.922 0.821 - -
68. syt11a ENSDARG00000057913 1145 1.741 - - - - - 0.831 0.910 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
69. trim2b ENSDARG00000076174 250 1.739 - - - - - 0.858 0.881 - - tripartite motif containing 2b [Source:ZFIN;Acc:ZDB-GENE-090312-70]
70. DTX4 ENSDARG00000076302 2642 1.729 - - - - - 0.873 0.856 - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
71. stx12l ENSDARG00000044605 99 1.724 - - - - 0.806 - 0.918 - - syntaxin 12, like [Source:ZFIN;Acc:ZDB-GENE-110715-1]
72. slc7a10a ENSDARG00000008100 178 1.722 - 1.000 - - - 0.722 - - - solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10a [Source:ZFIN;Acc:ZDB-GENE-080116-1]
73. eno2 ENSDARG00000014287 2162 1.722 - - - - - 0.846 0.876 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
74. mapk12b ENSDARG00000006409 2246 1.72 - - - - - 0.886 0.834 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
75. SACS_1 SACS_1 234 1.719 - - - - - 0.836 0.883 - -
76. ADAM22 ENSDARG00000060532 2259 1.718 - - - - - 0.870 0.848 - - ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
77. TMEM57 TMEM57 260 1.718 - - - - - 0.931 0.787 - -
78. nrxn3b ENSDARG00000062693 192 1.718 - - - - - 0.733 0.985 - - neurexin 3b [Source:ZFIN;Acc:ZDB-GENE-070206-10]
79. DLGAP2 DLGAP2 36 1.718 - 1.000 - - - - 0.718 - -
80. CU856359.2 CU856359.2 182 1.717 - - - - - 0.896 0.821 - -
81. camta1a ENSDARG00000077428, ENSDARG00000116922 176 1.714 - - - - - 0.855 0.859 - - calmodulin binding transcription activator 1a [Source:ZFIN;Acc:ZDB-GENE-090312-183]
82. CABZ01065506.1 CABZ01065506.1 204 1.714 - - - - - 0.896 0.818 - -
83. stxbp1a ENSDARG00000001994 5154 1.714 - - - - - 0.822 0.892 - - syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
84. TPPP2 ENSDARG00000035338, ENSDARG00000113727 298 1.71 - - - - - 0.951 0.759 - - tubulin polymerization-promoting protein family member 2 [Source:ZFIN;Acc:ZDB-GENE-140106-24]
85. mdkb ENSDARG00000020708 5393 1.71 - - - - - 0.892 0.818 - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
86. plp1a ENSDARG00000103732 3544 1.709 - - - - - 0.816 0.893 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
87. pcsk2 ENSDARG00000019451 442 1.709 - 1.000 - - - 0.709 - - - proprotein convertase subtilisin/kexin type 2 [Source:ZFIN;Acc:ZDB-GENE-090608-1]
88. hpca ENSDARG00000018397, ENSDARG00000110115 3866 1.705 - - - - - 0.931 0.774 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
89. kiaa1549la ENSDARG00000062477 143 1.704 - - - - - 0.740 0.964 - - KIAA1549-like a [Source:ZFIN;Acc:ZDB-GENE-061207-55]
90. si:ch73-21g5.7 ENSDARG00000093156 9412 1.703 - - - - - 0.855 0.848 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
91. TUBB2A TUBB2A 142 1.703 - - - - - 0.833 0.870 - -
92. glra1 ENSDARG00000012019 315 1.702 - - - - - 0.863 0.839 - - glycine receptor, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-991117-1]
93. emp1 ENSDARG00000069632 251 1.701 - - - - - 0.866 0.835 - - epithelial membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-070822-2]
94. dtnbb ENSDARG00000013020 280 1.698 - - - - - 0.954 0.744 - - dystrobrevin, beta b [Source:ZFIN;Acc:ZDB-GENE-070117-3]
95. erap2 ENSDARG00000098618 16 1.698 - - - - 0.904 - 0.794 - - endoplasmic reticulum aminopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-080402-6]
96. adarb1a ENSDARG00000041609 476 1.696 - - - - - 0.954 0.742 - - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
97. hmp19 2554 1.689 - - - - - 0.784 0.905 - - HMP19 protein
98. KCNS1 KCNS1 24 1.687 - - - - - 0.911 0.776 - -
99. VSTM2B VSTM2B 149 1.685 - - - - - 0.815 0.870 - -
100. unc119b ENSDARG00000044362 1528 1.683 - - - - - 0.869 0.814 - - unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]

There are 2196 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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