Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ldb3b

Gene Name Gene ID Reads Annotation
ldb3b ENSDARG00000099974 33615 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]










Genes with expression patterns similar to ldb3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ldb3b ENSDARG00000099974 33615 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
2. tpma ENSDARG00000033683 752432 3.541 0.899 - 0.931 - - 0.872 - 0.839 - alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. tmem182 tmem182 12589 3.397 0.910 - 0.837 - - - - 0.755 0.895
4. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 271486 3.269 0.865 - 0.865 0.750 - 0.789 - - - myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
5. acta1b ENSDARG00000055618 195597 3.263 0.836 - 0.927 - 0.702 - - 0.798 - actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
6. tmem38a ENSDARG00000024047 41883 3.176 0.753 - 0.890 - - 0.768 - 0.765 - transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
7. mybpc2b ENSDARG00000021265 9618 2.986 0.775 0.702 0.770 - - - - 0.739 - myosin binding protein C, fast type b [Source:ZFIN;Acc:ZDB-GENE-050320-80]
8. calm1b ENSDARG00000034187 13158 2.622 0.773 - 0.914 0.935 - - - - - calmodulin 1b [Source:ZFIN;Acc:ZDB-GENE-030804-2]
9. rbfox1l ENSDARG00000021184, ENSDARG00000111700 26249 2.584 - - 0.912 0.898 - - - 0.774 - RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
10. aldoab ENSDARG00000034470 88942 2.57 0.829 - 0.831 - - - - 0.910 - aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
11. klhl31 ENSDARG00000039066 13656 2.551 0.948 - 0.871 - - - - 0.732 - kelch-like family member 31 [Source:ZFIN;Acc:ZDB-GENE-030131-2052]
12. ckmb ENSDARG00000040565 505935 2.546 0.838 - 0.892 - - 0.816 - - - creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
13. nme2b.2 ENSDARG00000099420 70588 2.519 0.865 - - - - - 0.740 - 0.914 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
14. SYNPO2L SYNPO2L 6697 2.498 0.758 - 0.836 - - - - 0.904 -
15. atp2a1 ENSDARG00000020574 291561 2.492 0.802 - 0.902 - - - - 0.788 - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. mylz3 ENSDARG00000017441 303597 2.48 0.814 - 0.845 - - 0.821 - - - myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
17. si:ch211-226o13.2 84923 2.474 0.788 - 0.897 - - 0.789 - - - si:ch211-226o13.2
18. myhz1.3 ENSDARG00000067997 155509 2.472 0.857 - 0.881 - 0.734 - - - - myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. ank1 ank1 5209 2.442 0.735 - 0.838 - - - - 0.869 -
20. actc1b ENSDARG00000099197 324665 2.439 0.784 - 0.887 - - - - 0.768 - actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
21. klhl41b ENSDARG00000006757 10762 2.437 0.741 - 0.781 - - - - 0.915 - kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
22. casq2 ENSDARG00000008982 21802 2.427 0.788 - 0.849 - - - - 0.790 - calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
23. nmrk2 ENSDARG00000067848 10293 2.423 0.900 - 0.755 - - - - 0.768 - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
24. myom1a ENSDARG00000061249 10230 2.415 0.815 - 0.840 - - - - 0.760 - myomesin 1a (skelemin) [Source:ZFIN;Acc:ZDB-GENE-030131-2856]
25. atp5a1 48823 2.402 0.784 - - - 0.725 - - - 0.893 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
26. lama2 ENSDARG00000099390 24734 2.398 0.719 - 0.759 0.920 - - - - - laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
27. pvalb4 ENSDARG00000024433 35736 2.386 0.758 - 0.867 - - - - 0.761 - parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
28. pygma ENSDARG00000055518 15972 2.365 0.785 0.701 - - - - - 0.879 - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
29. actn3a ENSDARG00000013755, ENSDARG00000111128 22706 2.364 0.752 - 0.894 - - - 0.718 - - actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
30. eno1a ENSDARG00000022456, ENSDARG00000116458 14401 2.363 0.722 0.788 0.853 - - - - - - enolase 1a, (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-6048]
31. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 2.353 0.760 - 0.852 - - - - 0.741 - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
32. pvalb2 ENSDARG00000002768, ENSDARG00000114085 333278 2.342 0.862 - 0.734 - - 0.746 - - - parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
33. pgam2 ENSDARG00000057571 23387 2.334 0.731 - 0.756 - - - - 0.847 - phosphoglycerate mutase 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040116-6]
34. myl1 ENSDARG00000014196 98943 2.329 0.728 - 0.888 - - 0.713 - - - myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
35. AIMP1 ENSDARG00000060036 4136 2.297 0.760 - 0.826 - - - - 0.711 - aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:ZFIN;Acc:ZDB-GENE-060825-144]
36. si:ch211-156j16.1 ENSDARG00000092035 7441 2.292 0.757 0.773 0.762 - - - - - - si:ch211-156j16.1 [Source:ZFIN;Acc:ZDB-GENE-030131-4106]
37. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 27188 2.266 0.770 - 0.782 - - 0.714 - - - si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
38. rtn2a ENSDARG00000016088 12184 2.263 0.767 - 0.780 - - 0.716 - - - reticulon 2a [Source:ZFIN;Acc:ZDB-GENE-060420-1]
39. srl ENSDARG00000104587 11126 2.257 0.727 - 0.794 - - - - 0.736 - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
40. murcb murcb 13655 2.247 0.768 - 0.710 - - - - 0.769 -
41. smyd2b ENSDARG00000005629 8181 2.22 0.762 - 0.751 - - - - 0.707 - SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
42. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 2.218 0.715 - 0.802 - - - - 0.701 - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
43. tgm1l1 ENSDARG00000102106 1437 2.184 - 0.704 0.765 - - - - 0.715 - transglutaminase 1 like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-139]
44. EHBP1L1 EHBP1L1 2500 2.15 0.729 - 0.719 - - - - 0.702 -
45. ak1 ENSDARG00000001950 26964 1.769 0.969 - - - - 0.800 - - - adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
46. ttna ttna 101197 1.761 0.868 - 0.893 - - - - - -
47. SYNPO2 SYNPO2 7382 1.759 0.873 - 0.886 - - - - - -
48. ckma ENSDARG00000035327, ENSDARG00000114671 418792 1.71 0.869 - 0.841 - - - - - - creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
49. cd81 cd81 44833 1.708 0.904 - - - - - - - 0.804
50. hsp90aa1.1 ENSDARG00000010478 47784 1.69 0.916 - - - - - - - 0.774 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
51. ttnb ttnb 73721 1.684 0.824 - 0.860 - - - - - -
52. hhatla ENSDARG00000039051 6598 1.677 0.783 - 0.894 - - - - - - hedgehog acyltransferase like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1865]
53. cox4i1 ENSDARG00000032970 53784 1.675 - - - - - - - 0.752 0.923 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
54. myoz1b ENSDARG00000071445 13381 1.666 0.784 - 0.882 - - - - - - myozenin 1b [Source:ZFIN;Acc:ZDB-GENE-040718-146]
55. khdrbs1a ENSDARG00000052856 53666 1.662 - 0.851 - - - - 0.811 - - KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
56. rps16 ENSDARG00000045487 43243 1.65 0.801 - - 0.849 - - - - - ribosomal protein S16 [Source:ZFIN;Acc:ZDB-GENE-050506-107]
57. tgm2a ENSDARG00000070157 4516 1.639 0.791 - 0.848 - - - - - - transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
58. desma ENSDARG00000058656 30292 1.632 0.743 - 0.889 - - - - - - desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
59. gapdh ENSDARG00000043457 68684 1.628 - - 0.849 - - - - 0.779 - glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
60. tnnt3a ENSDARG00000030270 112506 1.624 0.748 - 0.876 - - - - - - troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
61. tnni1al 8272 1.622 - - 0.800 - - - - 0.822 - troponin I, skeletal, slow like, transcript variant X1
62. acta1a ENSDARG00000036371 137508 1.622 0.879 - - - - - - 0.743 - actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
63. tmod4 ENSDARG00000020890 17436 1.621 - - 0.882 - - - - 0.739 - tropomodulin 4 (muscle) [Source:ZFIN;Acc:ZDB-GENE-991019-9]
64. mt-co3 ENSDARG00000063912 398919 1.615 0.874 - - - - 0.741 - - - cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
65. tnni2a.4 ENSDARG00000029069 122344 1.613 0.794 - 0.819 - - - - - - troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
66. tpi1b ENSDARG00000040988, ENSDARG00000113061 29752 1.611 - - 0.804 - - - 0.807 - - triosephosphate isomerase 1b [Source:ZFIN;Acc:ZDB-GENE-020416-4]
67. rps12 ENSDARG00000036875, ENSDARG00000115157 92636 1.606 0.838 - - - - - 0.768 - - ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
68. actn3b ENSDARG00000001431 15747 1.605 0.776 - 0.829 - - - - - - actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
69. mt-nd4 ENSDARG00000063917 481351 1.6 0.750 - - - - - - 0.850 - NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
70. vcl vcl 6667 1.599 0.711 - 0.888 - - - - - -
71. tnnc2 ENSDARG00000070835, ENSDARG00000111155 259313 1.597 0.856 - - - - - - 0.741 - troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
72. tnnt2d ENSDARG00000002988 7590 1.583 - - 0.716 - - - - 0.867 - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
73. slc25a4 ENSDARG00000027355, ENSDARG00000112318 17542 1.583 0.741 - 0.842 - - - - - - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
74. nexn ENSDARG00000057317 10972 1.583 0.766 - 0.817 - - - - - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
75. myl10 ENSDARG00000062592 101207 1.577 0.793 - - - - - - - 0.784 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
76. CR847973.1 ENSDARG00000115516 8754 1.575 0.729 - 0.846 - - - - - -
77. hspb1 ENSDARG00000041065 13534 1.573 - - 0.775 - 0.798 - - - - heat shock protein, alpha-crystallin-related, 1 [Source:ZFIN;Acc:ZDB-GENE-030326-4]
78. mylpfb ENSDARG00000002589 70167 1.571 - - 0.865 - - - - 0.706 - myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
79. CR354540.2 ENSDARG00000117517 18452 1.565 - - 0.801 - - 0.764 - - -
80. sgcb ENSDARG00000052341 4168 1.564 - 0.713 0.851 - - - - - - sarcoglycan, beta (dystrophin-associated glycoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-6695]
81. tnnt3b ENSDARG00000068457 101827 1.558 0.757 - 0.801 - - - - - - troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
82. murca murca 6614 1.556 0.779 - 0.777 - - - - - -
83. rpsa ENSDARG00000019181 93440 1.546 0.825 - - 0.721 - - - - - ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. mt-nd1 ENSDARG00000063895 272230 1.542 0.825 - - - - 0.717 - - - NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
85. si:ch211-114n24.7 si:ch211-114n24.7 2544 1.537 0.703 - 0.834 - - - - - -
86. zgc:92518 ENSDARG00000016343 3837 1.537 0.764 - 0.773 - - - - - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
87. neb ENSDARG00000032630, ENSDARG00000109273 19493 1.536 0.706 - 0.830 - - - - - - nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
88. eef2l2 ENSDARG00000035256 6815 1.532 0.735 - 0.797 - - - - - - eukaryotic translation elongation factor 2, like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8112]
89. mt-co2 ENSDARG00000063908 621861 1.53 0.808 - - - - 0.722 - - - cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
90. col9a2 ENSDARG00000024492 20234 1.529 - - - - 0.756 - 0.773 - - procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
91. trdn ENSDARG00000041779 4283 1.529 0.730 - 0.799 - - - - - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
92. uqcrh ENSDARG00000059128 30831 1.52 - 0.798 - - - - - - 0.722 ubiquinol-cytochrome c reductase hinge protein [Source:ZFIN;Acc:ZDB-GENE-051030-93]
93. tmem161a ENSDARG00000012790 16094 1.516 0.758 - 0.758 - - - - - - transmembrane protein 161A [Source:ZFIN;Acc:ZDB-GENE-041111-267]
94. mt-nd2 ENSDARG00000063899 553982 1.514 0.707 - - - - - - 0.807 - NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
95. rps11 ENSDARG00000053058 16233 1.51 0.746 0.764 - - - - - - - ribosomal protein S11 [Source:ZFIN;Acc:ZDB-GENE-040426-2701]
96. sar1ab ENSDARG00000033320 3984 1.504 0.708 - 0.796 - - - - - - secretion associated, Ras related GTPase 1Ab [Source:ZFIN;Acc:ZDB-GENE-050417-437]
97. BX324201.1 BX324201.1 3302 1.502 0.756 - 0.746 - - - - - -
98. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 59212 1.495 - 0.743 0.752 - - - - - - myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
99. BX294434.1 ENSDARG00000061272 6493 1.492 0.749 - 0.743 - - - - - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
100. enpp1 ENSDARG00000005789 3267 1.491 0.705 - - - - - - - 0.786 ectonucleotide pyrophosphatase/phosphodiesterase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-172]

There are 390 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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