Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ldb3a

Gene Name Gene ID Reads Annotation
ldb3a ENSDARG00000056322, ENSDARG00000116388 2569 LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]










Genes with expression patterns similar to ldb3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ldb3a ENSDARG00000056322, ENSDARG00000116388 2569 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]
2. mybpc2b ENSDARG00000021265 9618 5.608 0.859 0.730 0.722 0.760 - - 0.905 0.798 0.834 myosin binding protein C, fast type b [Source:ZFIN;Acc:ZDB-GENE-050320-80]
3. atp2a1 ENSDARG00000020574 291561 5.595 0.926 - 0.776 0.751 - 0.744 0.811 0.765 0.822 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
4. tnnt3a ENSDARG00000030270 112506 5.523 0.835 - 0.792 0.815 - 0.718 0.772 0.713 0.878 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
5. CR847973.1 ENSDARG00000115516 8754 4.986 0.832 - - 0.714 - 0.941 0.974 0.703 0.822
6. klhl40a ENSDARG00000039052 2537 4.897 0.867 0.755 - - - 0.839 0.940 0.753 0.743 kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
7. PTPLA PTPLA 4044 4.853 0.798 0.764 - - - 0.864 0.896 0.712 0.819
8. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 4.852 0.840 0.757 - 0.712 - - 0.925 0.795 0.823 ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
9. BX294434.1 ENSDARG00000061272 6493 4.833 0.791 0.751 0.727 0.785 - - 0.946 - 0.833 solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
10. mdh1b ENSDARG00000018008 3196 4.794 0.787 - - 0.752 0.738 0.728 0.940 - 0.849 malate dehydrogenase 1B, NAD (soluble) [Source:ZFIN;Acc:ZDB-GENE-060929-384]
11. ckma ENSDARG00000035327, ENSDARG00000114671 418792 4.786 0.832 - 0.808 0.724 - 0.833 - 0.757 0.832 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. cap2 ENSDARG00000104478 3266 4.741 0.776 0.701 - - - 0.792 0.866 0.805 0.801 CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
13. stac3 ENSDARG00000098883 1765 4.732 0.815 0.725 0.720 - - 0.831 0.910 - 0.731 SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
14. pygma ENSDARG00000055518 15972 4.726 0.898 0.729 - - 0.736 - 0.921 0.705 0.737 phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
15. mylz3 ENSDARG00000017441 303597 4.714 0.836 - 0.752 0.812 - - 0.737 0.763 0.814 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
16. tpma ENSDARG00000033683 752432 4.7 0.848 - 0.789 0.752 - - 0.806 0.799 0.706 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
17. jph1a ENSDARG00000058603 2852 4.669 - 0.820 0.713 0.715 - 0.735 0.914 - 0.772 junctophilin 1a [Source:ZFIN;Acc:ZDB-GENE-040724-233]
18. usp28 ENSDARG00000008880 1850 4.615 0.779 0.750 0.745 - 0.709 - 0.919 0.713 - ubiquitin specific peptidase 28 [Source:ZFIN;Acc:ZDB-GENE-041008-142]
19. apobec2a ENSDARG00000018881 4790 4.576 0.827 0.755 0.709 0.763 - - - 0.812 0.710 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2a [Source:ZFIN;Acc:ZDB-GENE-050306-15]
20. ckmb ENSDARG00000040565 505935 4.568 0.791 - 0.804 0.803 - 0.718 - 0.750 0.702 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
21. myom1a ENSDARG00000061249 10230 4.222 - - 0.717 - - 0.932 0.960 0.788 0.825 myomesin 1a (skelemin) [Source:ZFIN;Acc:ZDB-GENE-030131-2856]
22. hhatla ENSDARG00000039051 6598 4.19 0.887 0.751 - 0.760 - - 0.932 - 0.860 hedgehog acyltransferase like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1865]
23. tgm2a ENSDARG00000070157 4516 4.128 0.866 - 0.738 - - 0.863 0.926 - 0.735 transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
24. rbfox1l ENSDARG00000021184, ENSDARG00000111700 26249 4.123 0.803 - 0.769 - - - 0.951 0.756 0.844 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
25. ryr1b ENSDARG00000023797 5693 4.08 - 0.787 0.725 - - - 0.969 0.726 0.873 ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
26. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 27188 4.08 0.886 0.774 - 0.818 - - - 0.719 0.883 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
27. tnnt2d ENSDARG00000002988 7590 4.078 0.784 - 0.762 - - 0.768 0.956 - 0.808 troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
28. gypc ENSDARG00000041546 1487 4.07 0.771 0.815 - - 0.716 0.881 0.887 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
29. myod1 ENSDARG00000030110 6019 4.059 0.771 0.720 - - - 0.902 0.907 - 0.759 myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
30. srl ENSDARG00000104587 11126 4.054 0.827 0.790 0.735 0.736 - - 0.966 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
31. murca murca 6614 4.054 0.817 - 0.752 - 0.777 0.932 - - 0.776
32. txlnbb ENSDARG00000076241 6396 4.018 0.851 0.797 - - - 0.791 0.866 - 0.713 taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
33. ryr3 ENSDARG00000071331 6795 4.017 0.718 0.721 - - - 0.803 0.937 - 0.838 ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
34. acta1b ENSDARG00000055618 195597 4.016 0.863 - 0.765 - - 0.787 0.756 0.845 - actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
35. slc25a4 ENSDARG00000027355, ENSDARG00000112318 17542 4.009 0.821 - 0.715 0.810 - - 0.899 0.764 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
36. ITGB1BP2 ENSDARG00000030176 2472 4.007 0.858 0.714 - - - 0.853 0.835 - 0.747 integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
37. trdn ENSDARG00000041779 4283 4 0.819 0.734 0.756 - - - 0.943 - 0.748 triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
38. znf106a ENSDARG00000016651 6049 3.989 0.809 0.742 - - - - 0.906 0.705 0.827 zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
39. CR354540.2 ENSDARG00000117517 18452 3.985 0.735 - 0.789 - 0.757 - 0.897 - 0.807
40. sptb ENSDARG00000030490 7128 3.98 0.793 0.786 - - - 0.731 0.965 - 0.705 spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
41. fitm1 ENSDARG00000056464 1759 3.959 0.814 0.716 - - - 0.715 0.883 0.831 - fat storage-inducing transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-050306-28]
42. si:ch211-226o13.2 84923 3.936 - - 0.732 0.820 - 0.741 - 0.753 0.890 si:ch211-226o13.2
43. myl1 ENSDARG00000014196 98943 3.93 0.755 - 0.836 0.709 - 0.855 - 0.775 - myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
44. cfl2 ENSDARG00000014106 8051 3.865 0.816 0.796 0.708 0.709 - - 0.836 - - cofilin 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1815]
45. sucla2 ENSDARG00000005359 5992 3.839 0.717 0.827 0.708 - - 0.867 - - 0.720 succinate-CoA ligase, ADP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1963]
46. SYNPO2 SYNPO2 7382 3.823 - - 0.726 - - 0.790 0.723 0.741 0.843
47. cacna2d1a ENSDARG00000014804 1924 3.786 0.724 0.724 - - - - 0.881 0.715 0.742 calcium channel, voltage-dependent, alpha 2/delta subunit 1a [Source:ZFIN;Acc:ZDB-GENE-041210-215]
48. mylpfb ENSDARG00000002589 70167 3.781 - 0.710 0.770 0.803 - 0.730 - 0.768 - myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
49. nexn ENSDARG00000057317 10972 3.526 0.843 - - - - 0.909 0.965 - 0.809 nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
50. TRIM63 TRIM63 1600 3.519 0.880 0.825 - - - 0.876 0.938 - -
51. zgc:92518 ENSDARG00000016343 3837 3.44 0.889 - - - - 0.912 0.926 - 0.713 zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
52. jph2 ENSDARG00000028625 6706 3.418 0.856 - - - - 0.757 0.944 - 0.861 junctophilin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9848]
53. sh3bgr ENSDARG00000021633 3498 3.416 0.862 0.803 - - - 0.823 0.928 - - SH3 domain binding glutamate-rich protein [Source:ZFIN;Acc:ZDB-GENE-040801-27]
54. mafa ENSDARG00000015890 2140 3.415 0.877 - - - - 0.864 0.907 - 0.767 v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog a (paralog a) [Source:ZFIN;Acc:ZDB-GENE-010605-2]
55. klhl41b ENSDARG00000006757 10762 3.414 0.807 - - - - 0.839 0.957 - 0.811 kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
56. chrna1 ENSDARG00000009021 2931 3.413 0.839 0.729 - - - 0.919 0.926 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
57. DNAJA4 ENSDARG00000051762 5657 3.39 - 0.757 - - - 0.891 0.932 0.810 - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
58. NRAP ENSDARG00000009341 3565 3.389 0.824 - - 0.788 - 0.855 0.922 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
59. myoz1b ENSDARG00000071445 13381 3.388 0.907 - - 0.841 - - - 0.770 0.870 myozenin 1b [Source:ZFIN;Acc:ZDB-GENE-040718-146]
60. BX324201.1 BX324201.1 3302 3.385 0.873 - - - - - 0.938 0.780 0.794
61. SYNPO2L SYNPO2L 6697 3.379 0.857 - - 0.788 - 0.880 - - 0.854
62. CR392006.1 CR392006.1 1401 3.368 - 0.810 - - - 0.833 0.914 - 0.811
63. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 3.367 0.857 - - - - 0.820 0.953 - 0.737 fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
64. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 3.305 0.816 0.811 - - - 0.790 0.888 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
65. zgc:92113 1738 3.304 0.729 - - - - 0.867 0.922 - 0.786 zgc:92113
66. pabpc4 ENSDARG00000059259, ENSDARG00000111312 2392 3.298 0.787 - - - - 0.894 0.884 - 0.733 poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
67. si:ch211-255p10.3 ENSDARG00000096616 8336 3.297 - - - - - 0.899 0.860 0.717 0.821 si:ch211-255p10.3 [Source:ZFIN;Acc:ZDB-GENE-121214-339]
68. cacng1 cacng1 3118 3.295 0.857 0.759 - - - 0.838 0.841 - -
69. ppapdc3 ppapdc3 4924 3.292 0.763 - - - - 0.870 0.950 - 0.709
70. pvalb4 ENSDARG00000024433 35736 3.291 0.882 - - 0.710 0.745 - 0.954 - - parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
71. sar1ab ENSDARG00000033320 3984 3.287 0.764 - - 0.756 - - 0.912 0.855 - secretion associated, Ras related GTPase 1Ab [Source:ZFIN;Acc:ZDB-GENE-050417-437]
72. ATP5J_2 ATP5J_2 2381 3.287 0.772 - - - - 0.837 0.923 0.755 -
73. FHOD3_1 FHOD3_1 983 3.284 0.828 0.798 - - - 0.731 0.927 - -
74. usp2a ENSDARG00000020107 2586 3.281 0.781 - - - - 0.844 0.942 - 0.714 ubiquitin specific peptidase 2a [Source:ZFIN;Acc:ZDB-GENE-041212-59]
75. kbtbd12 ENSDARG00000001882 1196 3.281 - 0.703 - - - 0.893 0.928 0.757 - kelch repeat and BTB (POZ) domain containing 12 [Source:ZFIN;Acc:ZDB-GENE-050904-1]
76. AIMP1 ENSDARG00000060036 4136 3.253 0.830 0.761 - - - 0.860 - - 0.802 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:ZFIN;Acc:ZDB-GENE-060825-144]
77. smyd2b ENSDARG00000005629 8181 3.252 0.805 0.762 - - - 0.908 - - 0.777 SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
78. atp1b3b ENSDARG00000042837 5163 3.242 0.716 - - - - 0.888 0.905 - 0.733 ATPase Na+/K+ transporting subunit beta 3b [Source:ZFIN;Acc:ZDB-GENE-001127-1]
79. ntmt1 ENSDARG00000022399 5779 3.238 0.812 0.759 - - - 0.829 0.838 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
80. rtn2a ENSDARG00000016088 12184 3.231 0.801 - 0.712 - - - 0.950 0.768 - reticulon 2a [Source:ZFIN;Acc:ZDB-GENE-060420-1]
81. EHBP1L1 EHBP1L1 2500 3.231 0.814 0.742 0.737 - - - 0.938 - -
82. rtn2b ENSDARG00000057027 1391 3.224 0.715 - - 0.837 - - 0.948 0.724 - reticulon 2b [Source:ZFIN;Acc:ZDB-GENE-060331-95]
83. C13H10orf71 3489 3.22 0.770 0.740 - - - - 0.965 - 0.745 chromosome 13 C10orf71 homolog
84. si:ch211-114n24.7 si:ch211-114n24.7 2544 3.211 0.826 0.775 - 0.733 - - 0.877 - -
85. TENC1 TENC1 1729 3.202 0.795 0.747 - - - 0.735 0.925 - -
86. tnni2a.4 ENSDARG00000029069 122344 3.202 0.880 - 0.749 - - - - 0.803 0.770 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
87. limch1a ENSDARG00000074275 2981 3.201 0.759 0.779 - - - 0.742 0.921 - - LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]
88. prx ENSDARG00000017246 6183 3.195 0.743 - - 0.739 - - 0.935 - 0.778 periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
89. rp42-pen rp42-pen 3395 3.195 - 0.740 - - - 0.858 0.887 - 0.710
90. obsl1b ENSDARG00000077388 2511 3.19 0.758 0.743 - - - - 0.867 0.822 - obscurin-like 1b [Source:ZFIN;Acc:ZDB-GENE-050809-29]
91. chrnd ENSDARG00000019342 2728 3.186 0.795 0.768 - - - - 0.888 - 0.735 cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
92. tmem161a ENSDARG00000012790 16094 3.185 0.910 - - 0.723 - - 0.723 - 0.829 transmembrane protein 161A [Source:ZFIN;Acc:ZDB-GENE-041111-267]
93. cmya5 ENSDARG00000061379 1423 3.184 0.781 - - 0.738 - 0.796 0.869 - - cardiomyopathy associated 5 [Source:ZFIN;Acc:ZDB-GENE-070630-1]
94. PTP4A3 ENSDARG00000039997 3814 3.181 0.795 0.836 - - - 0.842 0.708 - - protein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
95. xirp2a ENSDARG00000071113 7113 3.176 0.788 0.776 - - - 0.729 0.883 - - xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
96. myhc4 ENSDARG00000035438 1322 3.164 0.726 0.775 - - - 0.743 0.920 - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
97. acsl1 acsl1 4216 3.158 0.761 - - 0.707 - 0.851 0.839 - -
98. pvalb2 ENSDARG00000002768, ENSDARG00000114085 333278 3.156 0.866 - - - - 0.706 - 0.801 0.783 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
99. COL22A1 COL22A1 4473 3.155 0.771 0.709 0.739 - - - 0.936 - -
100. ptrfa ptrfa 4363 3.15 0.809 0.776 - - - 0.793 - - 0.772

There are 1411 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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