Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ldb2b

Gene Name Gene ID Reads Annotation
ldb2b ENSDARG00000034896, ENSDARG00000113987, ENSDARG00000116485 976 LIM domain binding 2b [Source:ZFIN;Acc:ZDB-GENE-990415-137]










Genes with expression patterns similar to ldb2b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ldb2b ENSDARG00000034896, ENSDARG00000113987, ENSDARG00000116485 976 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM domain binding 2b [Source:ZFIN;Acc:ZDB-GENE-990415-137]
2. gapvd1 ENSDARG00000090183, ENSDARG00000113177 611 2.408 - 0.779 - 0.794 - - 0.835 - - GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
3. mex3b ENSDARG00000058369 1867 2.386 - - - - 0.759 - 0.771 - 0.856 mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
4. ntn1a ENSDARG00000105112, ENSDARG00000111684 2553 2.324 - - - - - 0.736 0.824 - 0.764 netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
5. celf4 ENSDARG00000070045 1537 2.32 - - - 0.770 - - 0.815 0.735 - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
6. espl1 ENSDARG00000075354 818 1.715 - - - - - - 0.852 - 0.863 extra spindle pole bodies like 1, separase [Source:ZFIN;Acc:ZDB-GENE-030131-5188]
7. haus3 ENSDARG00000061385, ENSDARG00000110959 343 1.71 - 0.920 - - - - 0.790 - - HAUS augmin-like complex, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-060929-592]
8. memo1 ENSDARG00000010823 1681 1.701 - - - 0.833 - - - - 0.868 mediator of cell motility 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5571]
9. st8sia2 ENSDARG00000018788 2183 1.684 - - - - - - 0.856 - 0.828 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
10. AKT3 AKT3 1729 1.677 - - - - - - 0.785 - 0.892
11. kif5c ENSDARG00000076027 424 1.676 - - - - - - 0.841 - 0.835 kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
12. gad2 ENSDARG00000015537 724 1.675 - - - - - - 0.839 - 0.836 glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
13. gas1b ENSDARG00000067984 1748 1.639 - 0.761 - - - - 0.878 - - growth arrest-specific 1b [Source:ZFIN;Acc:ZDB-GENE-050302-79]
14. pwp1 ENSDARG00000015921 1160 1.629 - - - 0.794 - - 0.835 - - PWP1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1049]
15. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 1.628 - 0.855 - - - - 0.773 - - zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
16. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 1.617 - - - - - - 0.840 - 0.777 sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
17. prdm8 ENSDARG00000025017 370 1.616 - - - - - 0.735 0.881 - - PR domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2747]
18. prpf4ba ENSDARG00000008784 936 1.614 - - - - - - - 0.726 0.888 pre-mRNA processing factor 4Ba [Source:ZFIN;Acc:ZDB-GENE-040426-947]
19. kifap3a ENSDARG00000008639 721 1.612 0.819 - - - - - 0.793 - - kinesin-associated protein 3a [Source:ZFIN;Acc:ZDB-GENE-040912-74]
20. ift52 ENSDARG00000045025 606 1.609 - - - 0.806 - - 0.803 - - intraflagellar transport 52 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-040614-3]
21. si:dkey-19e4.5 ENSDARG00000089886 2562 1.608 0.830 - - - - - - - 0.778 si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
22. mpnd ENSDARG00000061989 817 1.608 0.836 - - - - - 0.772 - - MPN domain containing [Source:ZFIN;Acc:ZDB-GENE-060929-1162]
23. insm1a ENSDARG00000091756 1838 1.607 - - - - - - 0.778 - 0.829 insulinoma-associated 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1810]
24. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.606 - - - - - - 0.786 - 0.820 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
25. nrxn3b ENSDARG00000062693 192 1.605 - - - - - - 0.844 - 0.761 neurexin 3b [Source:ZFIN;Acc:ZDB-GENE-070206-10]
26. RASGRF2 RASGRF2 644 1.604 - - - 0.805 - - 0.799 - -
27. olig2 ENSDARG00000040946 1405 1.603 - - - - - - 0.831 - 0.772 oligodendrocyte lineage transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4013]
28. gad1b ENSDARG00000027419 440 1.602 - - - - - - 0.842 - 0.760 glutamate decarboxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030909-3]
29. lhx5 ENSDARG00000057936 785 1.601 - - - - - - 0.720 - 0.881 LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
30. nme5 ENSDARG00000041617 135 1.598 - - - - - 0.726 0.872 - - NME/NM23 family member 5 [Source:ZFIN;Acc:ZDB-GENE-040718-221]
31. morc2 ENSDARG00000028539 3259 1.598 - - - - 0.707 - - - 0.891 MORC family CW-type zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-040822-40]
32. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 1.597 - - - 0.801 - - 0.796 - - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
33. nrn1a ENSDARG00000071860 1311 1.596 - - - - - - 0.788 - 0.808 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
34. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 1.596 - - - - - - 0.753 - 0.843 immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
35. tmem59l ENSDARG00000003655 1536 1.595 - - - - - - 0.796 - 0.799 transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
36. yeats4 ENSDARG00000045874 1168 1.594 - - - 0.802 - - 0.792 - - YEATS domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040718-252]
37. rdh12 ENSDARG00000018069 396 1.594 - 0.781 - - - - 0.813 - - retinol dehydrogenase 12 [Source:ZFIN;Acc:ZDB-GENE-040718-9]
38. NHS NHS 409 1.592 - - - - - - 0.815 - 0.777
39. plekhg7 ENSDARG00000062855 308 1.592 - 0.801 - - - - 0.791 - - pleckstrin homology domain containing, family G (with RhoGef domain) member 7 [Source:ZFIN;Acc:ZDB-GENE-070410-15]
40. ptn ENSDARG00000102340 229 1.591 - - - - - - 0.810 - 0.781 pleiotrophin [Source:ZFIN;Acc:ZDB-GENE-030624-1]
41. SSX2IP SSX2IP 316 1.586 - - - - - 0.728 0.858 - -
42. st8sia5 ENSDARG00000036584 529 1.582 - - - - - - 0.794 - 0.788 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
43. si:ch211-133l11.10 ENSDARG00000005626 381 1.577 - - - 0.809 - - - - 0.768 si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
44. npm1b ENSDARG00000037675 5448 1.577 - - - - - - 0.756 0.821 - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
45. npas3b npas3b 1446 1.577 - - - - - - 0.781 - 0.796
46. syncripl ENSDARG00000026723 3889 1.577 - - - - - - 0.704 - 0.873 synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
47. DDX47_1 DDX47_1 453 1.576 - - - 0.823 - - - - 0.753
48. cars ENSDARG00000036164 2019 1.575 - - - 0.747 - - - - 0.828 cysteinyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030328-29]
49. tctn2 ENSDARG00000035633 84 1.566 - 0.845 - - - - 0.721 - - tectonic family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-751]
50. tmem63bb ENSDARG00000106631 503 1.565 - 0.756 - - - - - - 0.809 transmembrane protein 63Bb [Source:NCBI gene;Acc:569678]
51. supt16h ENSDARG00000079949 4755 1.565 - - - - - - 0.730 - 0.835 SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
52. pdlim5a ENSDARG00000101777 357 1.563 - 0.769 - - - - - - 0.794 PDZ and LIM domain 5a [Source:ZFIN;Acc:ZDB-GENE-040718-401]
53. cspg5a ENSDARG00000069981 1699 1.562 - - - - - - 0.836 - 0.726 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
54. MIB1 ENSDARG00000102184 3285 1.562 - - - - 0.705 - - - 0.857 mindbomb E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-030404-2]
55. zgc:113348 ENSDARG00000103795 1351 1.561 - - - - - - 0.771 - 0.790 zgc:113348 [Source:ZFIN;Acc:ZDB-GENE-050227-10]
56. pogza ENSDARG00000054778 1495 1.561 0.749 - - 0.812 - - - - - pogo transposable element derived with ZNF domain a [Source:ZFIN;Acc:ZDB-GENE-040914-76]
57. jph3 ENSDARG00000102204 175 1.558 - - - - - - 0.769 - 0.789 junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
58. her15.2 her15.2 1701 1.557 - - - - - - 0.818 - 0.739
59. ADAM22 ENSDARG00000060532 2259 1.555 - - - - - - 0.803 - 0.752 ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
60. FRMPD3 ENSDARG00000074865, ENSDARG00000109705 276 1.548 - - - - - - 0.716 - 0.832 FERM and PDZ domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-100316-9]
61. txnl4a ENSDARG00000036190 2048 1.544 - - - - - - 0.746 - 0.798 thioredoxin-like 4A [Source:ZFIN;Acc:ZDB-GENE-041010-25]
62. si:ch211-85n16.3 ENSDARG00000096346 1095 1.543 - 0.788 - 0.755 - - - - - si:ch211-85n16.3 [Source:ZFIN;Acc:ZDB-GENE-120215-137]
63. pou4f2 ENSDARG00000069737 451 1.541 - - - - - - - 0.736 0.805 POU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
64. stmn1b ENSDARG00000033655 9491 1.541 - - - - - - 0.743 - 0.798 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
65. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.541 - - - - - - 0.716 - 0.825 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
66. rac3a ENSDARG00000090062 394 1.54 - - - - - - 0.758 - 0.782 Rac family small GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-040718-256]
67. her4.1 ENSDARG00000056732 1264 1.54 - - - - - - 0.760 - 0.780 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
68. rheb ENSDARG00000090213 1432 1.538 - - - - - - 0.780 - 0.758 Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
69. wdr32 ENSDARG00000029600, ENSDARG00000110405 607 1.537 - - - - - 0.720 0.817 - - WD repeat domain 32 [Source:ZFIN;Acc:ZDB-GENE-040426-2314]
70. acyp1 ENSDARG00000060126 2161 1.536 - - - - - 0.811 0.725 - - acylphosphatase 1, erythrocyte (common) type [Source:ZFIN;Acc:ZDB-GENE-050309-125]
71. dnajc6 ENSDARG00000079891 438 1.535 - - - - - - 0.824 0.711 - DnaJ (Hsp40) homolog, subfamily C, member 6 [Source:ZFIN;Acc:ZDB-GENE-080104-2]
72. emc9 ENSDARG00000034633 686 1.53 - - - 0.745 - - 0.785 - - ER membrane protein complex subunit 9 [Source:ZFIN;Acc:ZDB-GENE-040426-693]
73. TNRC6C_2 TNRC6C_2 2444 1.53 - - 0.735 - - - 0.795 - -
74. pou4f1 ENSDARG00000005559 821 1.529 - - - 0.790 - - 0.739 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
75. nova2 ENSDARG00000017673 7685 1.527 - - - - - - 0.794 - 0.733 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
76. mta2 ENSDARG00000013031 2932 1.526 - - - - - - 0.759 - 0.767 metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
77. dopey1 438 1.525 - 0.759 - - - - - - 0.766 dopey family member 1, transcript variant X4
78. appb ENSDARG00000055543, ENSDARG00000109552 4461 1.524 - - - - - - 0.808 - 0.716 amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
79. rbm15b ENSDARG00000078966, ENSDARG00000112832 1888 1.521 - - - 0.720 - - 0.801 - - RNA binding motif protein 15B [Source:ZFIN;Acc:ZDB-GENE-080204-91]
80. ercc5 ENSDARG00000023678 468 1.52 - 0.713 - 0.807 - - - - - excision repair cross-complementation group 5 [Source:ZFIN;Acc:ZDB-GENE-050327-28]
81. ebf3 ebf3 4238 1.52 - - - - - - 0.744 - 0.776
82. CHD1 ENSDARG00000103787 1645 1.518 - - - 0.712 - - - - 0.806 chromodomain helicase DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7120]
83. ephb3a ENSDARG00000031548 1872 1.515 - - - - - - 0.771 - 0.744 eph receptor B3a [Source:ZFIN;Acc:ZDB-GENE-990415-60]
84. papss1 ENSDARG00000057099 809 1.515 - - - - - - 0.709 - 0.806 3'-phosphoadenosine 5'-phosphosulfate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-080721-5]
85. hs3st1l2 ENSDARG00000035578 279 1.513 - - - 0.737 - - 0.776 - - heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2 [Source:ZFIN;Acc:ZDB-GENE-070202-3]
86. pdzrn3b ENSDARG00000073869 1566 1.513 - 0.741 - - - - - - 0.772 PDZ domain containing RING finger 3b [Source:ZFIN;Acc:ZDB-GENE-071022-4]
87. fzd3a ENSDARG00000021664 1958 1.509 - 0.777 - - - - 0.732 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
88. wu:fd60c08 wu:fd60c08 35 1.508 - 0.791 - - - - 0.717 - -
89. CABZ01021538.1 CABZ01021538.1 67 1.507 - - - - - 0.711 0.796 - -
90. mrgbp ENSDARG00000028894, ENSDARG00000110790 1316 1.507 - - - 0.797 - - 0.710 - - MRG/MORF4L binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1698]
91. plagx ENSDARG00000036855 3768 1.506 - - - - 0.740 - 0.766 - - pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
92. PSIP1 PSIP1 5252 1.506 - - - - - - 0.798 - 0.708
93. stim1b ENSDARG00000061560 146 1.505 - 0.736 - 0.769 - - - - - stromal interaction molecule 1b [Source:ZFIN;Acc:ZDB-GENE-060531-4]
94. plp1a ENSDARG00000103732 3544 1.505 - - - - - - 0.799 - 0.706 proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
95. kif15 ENSDARG00000012073 1936 1.504 - - - - 0.715 - - - 0.789 kinesin family member 15 [Source:ZFIN;Acc:ZDB-GENE-050622-16]
96. prkrira 971 1.501 0.743 - - - - - 0.758 - - protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) a
97. lnpep ENSDARG00000100394 1436 1.501 - 0.760 - - - - - - 0.741 leucyl/cystinyl aminopeptidase [Source:ZFIN;Acc:ZDB-GENE-030131-1534]
98. rassf2a ENSDARG00000029865, ENSDARG00000113625 1134 1.5 - - - - - 0.731 0.769 - - Ras association (RalGDS/AF-6) domain family member 2a [Source:ZFIN;Acc:ZDB-GENE-040912-124]
99. pebp1 ENSDARG00000042069 6651 1.5 - - - - - - 0.783 - 0.717 phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
100. wdr76 ENSDARG00000053554, ENSDARG00000115151 813 1.498 - - - - 0.714 0.784 - - - WD repeat domain 76 [Source:ZFIN;Acc:ZDB-GENE-030131-4513]

There are 2055 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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