Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lbx1a

Gene Name Gene ID Reads Annotation
lbx1a ENSDARG00000018321 634 ladybird homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040724-40]










Genes with expression patterns similar to lbx1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lbx1a ENSDARG00000018321 634 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ladybird homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040724-40]
2. cspg5a ENSDARG00000069981 1699 2.526 0.837 - - - - 0.940 0.749 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
3. INA INA 950 2.48 0.931 - - - - 0.820 0.729 - -
4. elavl4 ENSDARG00000045639 998 2.472 0.865 - - - - 0.881 0.726 - - ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
5. gng3 ENSDARG00000009553 2530 2.457 0.798 - - - - 0.949 0.710 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
6. bhlhe22 ENSDARG00000058039 1673 2.454 0.859 - - - - 0.875 0.720 - - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
7. necab2 ENSDARG00000056745, ENSDARG00000110976 304 2.42 0.775 - - - - 0.897 0.748 - - N-terminal EF-hand calcium binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050706-167]
8. dbx2 2971 2.416 0.792 - - - - 0.902 0.722 - - developing brain homeobox 2
9. slc8a2b ENSDARG00000100592 598 2.408 0.716 - - - - 0.945 0.747 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
10. ntrk2a ENSDARG00000059897 185 2.407 0.759 - - - - 0.940 0.708 - - neurotrophic tyrosine kinase, receptor, type 2a [Source:ZFIN;Acc:ZDB-GENE-010126-1]
11. pou4f1 ENSDARG00000005559 821 2.404 0.856 - - - - 0.824 0.724 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
12. scn2b ENSDARG00000101713 796 2.404 0.755 - - - - 0.945 0.704 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
13. APBB3 ENSDARG00000053771 654 2.397 0.827 - - - - 0.866 0.704 - - amyloid beta (A4) precursor protein-binding, family B, member 3 [Source:ZFIN;Acc:ZDB-GENE-140106-53]
14. tlx2 ENSDARG00000011273 870 2.397 0.840 - - - - 0.802 - - 0.755 T cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020208-1]
15. nlgn3b ENSDARG00000062376 171 2.393 0.904 - - - - 0.775 0.714 - - neuroligin 3b [Source:ZFIN;Acc:ZDB-GENE-060526-197]
16. SPOCK1 ENSDARG00000074644 794 2.391 0.737 - - - - 0.911 0.743 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
17. dnajc5aa ENSDARG00000042948 2885 2.381 0.772 - - - - 0.895 0.714 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
18. calb2a ENSDARG00000041062, ENSDARG00000110220 459 2.374 0.905 - - - - 0.726 0.743 - - calbindin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1677]
19. MAPK8IP1_1 MAPK8IP1_1 186 2.371 0.849 - - - - 0.730 0.792 - -
20. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 2.367 0.862 - - - - 0.794 0.711 - - zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
21. EPB41L1 EPB41L1 1896 2.361 0.728 - - - - 0.879 0.754 - -
22. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 2.361 0.847 - - - - 0.752 0.762 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
23. dpysl3 ENSDARG00000002587 4381 2.36 0.707 - - - - 0.850 0.803 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
24. b3gat2 ENSDARG00000030733 348 2.347 0.837 - - - - 0.762 0.748 - - beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) [Source:ZFIN;Acc:ZDB-GENE-040801-191]
25. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.34 0.780 - - - - 0.836 0.724 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
26. UBE2QL1 ENSDARG00000079276 3474 2.332 0.843 - - - - 0.745 0.744 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
27. cdk5r1b ENSDARG00000045087 2075 2.33 0.766 - - - - 0.830 0.734 - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
28. ckbb ENSDARG00000043257 3503 2.33 0.714 - - - - 0.857 0.759 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
29. scrt2 ENSDARG00000056175 4331 2.31 0.876 - - - - 0.713 0.721 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
30. kcnc3a ENSDARG00000055855 1821 2.307 0.703 - - - - 0.841 0.763 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
31. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.293 0.704 - - - - 0.817 0.772 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
32. stmn4l ENSDARG00000043932 654 2.29 0.803 - - - - 0.765 0.722 - - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
33. AGO1 ENSDARG00000092644 4521 2.243 0.762 - - - - 0.771 0.710 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
34. snap25a ENSDARG00000020609 4537 2.237 0.748 - - - - 0.782 0.707 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
35. scn8aa ENSDARG00000005775 792 2.237 0.722 - - - - 0.809 0.706 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
36. rab3ab ENSDARG00000043835 1267 2.225 0.772 - - - - 0.741 0.712 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
37. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.222 0.770 - - - - 0.722 0.730 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
38. cadm3 ENSDARG00000057013 1545 2.222 0.752 - - - - 0.734 0.736 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
39. nrxn1a ENSDARG00000061647, ENSDARG00000111866 1069 2.203 0.720 - - - - 0.714 0.769 - - neurexin 1a [Source:ZFIN;Acc:ZDB-GENE-070206-1]
40. msi1 ENSDARG00000010710 2634 2.181 0.736 - - - - 0.725 0.720 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
41. fgf13b ENSDARG00000056633 455 1.841 0.967 - - - - 0.874 - - - fibroblast growth factor 13b [Source:ZFIN;Acc:ZDB-GENE-040426-1793]
42. BSN BSN 463 1.778 - - - - - 0.883 0.895 - -
43. adam23a ENSDARG00000062323 580 1.777 0.965 - - - - 0.812 - - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
44. lbx1b ENSDARG00000018611 399 1.766 0.867 - - - - 0.899 - - - ladybird homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050309-27]
45. ncam2 ENSDARG00000017466 175 1.763 0.904 - - - - 0.859 - - - neural cell adhesion molecule 2 [Source:ZFIN;Acc:ZDB-GENE-010822-1]
46. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 1.753 0.756 0.997 - - - - - - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
47. recql ENSDARG00000007175 501 1.746 - 1.000 - - - 0.746 - - - RecQ helicase-like [Source:ZFIN;Acc:ZDB-GENE-050809-134]
48. capn1b ENSDARG00000052748, ENSDARG00000117045 320 1.743 0.924 - - - - 0.819 - - - calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
49. LMTK3 LMTK3 222 1.743 0.906 - - - - - 0.837 - -
50. CU179656.1 ENSDARG00000107086 270 1.733 0.902 - - - - 0.831 - - -
51. NPAS3 ENSDARG00000109820 362 1.732 0.938 - - - - 0.794 - - - neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
52. mapk11 ENSDARG00000045836 846 1.725 0.846 - - - - 0.879 - - - mitogen-activated protein kinase 11 [Source:ZFIN;Acc:ZDB-GENE-040625-75]
53. scube2 ENSDARG00000037362 2833 1.725 0.871 - - - - 0.854 - - - signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
54. rab39b rab39b 449 1.71 - - - - - 0.945 0.765 - -
55. PDZD4 ENSDARG00000090564 131 1.705 0.962 - - - - 0.743 - - - PDZ domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21167]
56. map1aa ENSDARG00000059601 599 1.701 - - - - - 0.940 0.761 - - microtubule-associated protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-100426-2]
57. neto1l ENSDARG00000071596 57 1.699 0.829 - - - - 0.870 - - - neuropilin (NRP) and tolloid (TLL)-like 1, like [Source:ZFIN;Acc:ZDB-GENE-091207-1]
58. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 1.682 0.806 - - - - 0.876 - - - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
59. NPTXR NPTXR 241 1.679 - - - - - 0.971 0.708 - -
60. MCTP1 MCTP1 219 1.677 0.861 - - - - 0.816 - - -
61. dtnbp1b ENSDARG00000055206 64 1.675 - - - - - 0.950 0.725 - - dystrobrevin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-060503-889]
62. MAP1B ENSDARG00000060434, ENSDARG00000113782 1983 1.674 0.784 - - - - 0.890 - - - microtubule-associated protein 1B [Source:ZFIN;Acc:ZDB-GENE-130530-690]
63. lhx1a ENSDARG00000014018 958 1.674 - - - - - 0.923 0.751 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
64. vamp1 ENSDARG00000031283 3094 1.668 0.815 - - - - 0.853 - - - vesicle-associated membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2725]
65. ptprsa ENSDARG00000059738, ENSDARG00000110940 7232 1.667 - 0.953 - - - 0.714 - - - protein tyrosine phosphatase, receptor type, s, a [Source:ZFIN;Acc:ZDB-GENE-020107-3]
66. nefmb ENSDARG00000043697 2052 1.666 0.765 - - - - 0.901 - - - neurofilament, medium polypeptide b [Source:ZFIN;Acc:ZDB-GENE-070103-4]
67. ppfia4 ENSDARG00000053205 276 1.665 - - - - - 0.792 0.873 - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 [Source:ZFIN;Acc:ZDB-GENE-070720-14]
68. kcnd1 ENSDARG00000074746 153 1.665 0.777 - - - - 0.888 - - - potassium voltage-gated channel, Shal-related subfamily, member 1 [Source:ZFIN;Acc:ZDB-GENE-081105-40]
69. TUBB8P7_2 TUBB8P7_2 565 1.66 - - - - - 0.909 0.751 - -
70. cuedc1a ENSDARG00000068716 232 1.658 0.817 - - - - 0.841 - - - CUE domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-061027-344]
71. MAN1B1 MAN1B1 47 1.653 0.883 - - - - 0.770 - - -
72. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 1.647 - - - - - 0.937 0.710 - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
73. negr1 ENSDARG00000021607 1051 1.643 0.793 - - - - 0.850 - - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
74. uchl1 ENSDARG00000026871 1578 1.641 - - - - - 0.799 0.842 - - ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) [Source:ZFIN;Acc:ZDB-GENE-030131-3844]
75. C8H1orf106 C8H1orf106 2690 1.638 0.813 - - - - 0.825 - - -
76. myrip ENSDARG00000038814 103 1.636 - - - - - 0.805 0.831 - - myosin VIIA and Rab interacting protein [Source:ZFIN;Acc:ZDB-GENE-080123-1]
77. clstn3 ENSDARG00000073883 590 1.633 - - - - - 0.889 0.744 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
78. ANKRD13D ENSDARG00000098140 88 1.632 0.904 - - - - - 0.728 - - ankyrin repeat domain 13 family, member D [Source:ZFIN;Acc:ZDB-GENE-101007-3]
79. TUSC3 ENSDARG00000078854 1021 1.626 - - - - - 0.880 0.746 - - tumor suppressor candidate 3 [Source:ZFIN;Acc:ZDB-GENE-050522-381]
80. prdm13 ENSDARG00000078701 205 1.623 - - - 0.748 - 0.875 - - - PR domain containing 13 [Source:ZFIN;Acc:ZDB-GENE-080616-1]
81. syngr3a ENSDARG00000014871 405 1.62 - - - - - 0.901 0.719 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
82. gpr56 gpr56 523 1.619 - - - - - 0.816 0.803 - -
83. rbfox3 rbfox3 1443 1.617 - - - - - 0.889 0.728 - -
84. sox19b ENSDARG00000040266 532 1.616 - - - - - 0.818 0.798 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
85. TPPP2 ENSDARG00000035338, ENSDARG00000113727 298 1.614 0.892 - - - - - 0.722 - - tubulin polymerization-promoting protein family member 2 [Source:ZFIN;Acc:ZDB-GENE-140106-24]
86. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.611 - - - - - 0.882 0.729 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
87. FP102892.2 FP102892.2 809 1.61 - - - - - 0.888 0.722 - -
88. syt4 ENSDARG00000036505 421 1.604 - - - - - 0.891 0.713 - - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
89. calm3a ENSDARG00000015050, ENSDARG00000100825 1817 1.604 - - - - - 0.868 0.736 - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
90. tmem59l ENSDARG00000003655 1536 1.602 - - - - - 0.830 0.772 - - transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
91. SKOR2 SKOR2 1041 1.601 - - - - - 0.875 0.726 - -
92. CBFA2T3 ENSDARG00000079012 6799 1.601 - - - - - 0.871 0.730 - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
93. fam219ab ENSDARG00000013813 591 1.601 - - - - - 0.800 0.801 - - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
94. hoxc4a ENSDARG00000070338 1382 1.6 - - - - - 0.734 0.866 - - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
95. sv2bb ENSDARG00000060711 196 1.6 0.890 - - - - - 0.710 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
96. ppp3ca ENSDARG00000004988 615 1.599 0.892 - - - - - 0.707 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
97. csf1b ENSDARG00000068263 248 1.595 0.862 - - - - 0.733 - - - colony stimulating factor 1b (macrophage) [Source:ZFIN;Acc:ZDB-GENE-061215-106]
98. FGFBP3 FGFBP3 993 1.593 - - - - - 0.851 0.742 - -
99. sall3b ENSDARG00000057586 982 1.593 - - - - - 0.868 0.725 - - spalt-like transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9140]
100. kcnip3a ENSDARG00000034229 63 1.591 - - - - - 0.890 0.701 - - Kv channel interacting protein 3a, calsenilin [Source:ZFIN;Acc:ZDB-GENE-040426-1791]

There are 1376 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA