Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ism1

Gene Name Gene ID Reads Annotation
ism1 ENSDARG00000020541 1241 isthmin 1 [Source:ZFIN;Acc:ZDB-GENE-050523-3]










Genes with expression patterns similar to ism1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ism1 ENSDARG00000020541 1241 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 isthmin 1 [Source:ZFIN;Acc:ZDB-GENE-050523-3]
2. ntla ntla 926 3.13 0.705 - - - - 0.834 0.805 - 0.786
3. si:dkeyp-118a3.2 ENSDARG00000086957 2106 3.107 - 0.711 - 0.769 - 0.819 0.808 - - si:dkeyp-118a3.2 [Source:ZFIN;Acc:ZDB-GENE-060810-149]
4. plod2 ENSDARG00000011821 1656 3.07 0.784 0.735 - - - 0.831 0.720 - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 [Source:ZFIN;Acc:ZDB-GENE-070326-1]
5. plcl1 ENSDARG00000067676 2457 2.523 - 0.819 - - - 0.861 0.843 - - phospholipase C like 1 [Source:ZFIN;Acc:ZDB-GENE-090313-194]
6. PAQR4 PAQR4 2150 2.456 - - - - - 0.783 0.809 - 0.864
7. epyc ENSDARG00000056950 7783 2.431 - 0.733 - - - 0.899 0.799 - - epiphycan [Source:ZFIN;Acc:ZDB-GENE-041008-9]
8. BX842614.2 BX842614.2 799 2.405 0.746 - - - - 0.865 0.794 - -
9. col27a1a 1747 2.378 - - - - - 0.840 0.712 - 0.826 collagen, type XXVII, alpha 1a
10. plod1a ENSDARG00000059746 3364 2.372 - - - - - 0.795 0.876 - 0.701 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3165]
11. CABZ01044297.1 CABZ01044297.1 2015 2.371 0.703 - - - - 0.884 0.784 - -
12. col9a3 ENSDARG00000037845 6564 2.358 - 0.746 - - - 0.860 0.752 - - collagen, type IX, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9799]
13. COBLL1_1 COBLL1_1 787 2.356 - 0.794 - - - 0.773 0.789 - -
14. sncga ENSDARG00000034423, ENSDARG00000112260 5469 2.341 - 0.743 - - - 0.764 0.834 - - synuclein, gamma a [Source:ZFIN;Acc:ZDB-GENE-050417-18]
15. CR847510.1 CR847510.1 629 2.294 - 0.747 - - - 0.759 0.788 - -
16. ltbp3 325 2.247 - 0.746 - - - 0.755 0.746 - - latent transforming growth factor beta binding protein 3, transcript variant X3
17. CR352249.1 ENSDARG00000114701 857 2.22 0.706 - - - - 0.756 0.758 - - solute carrier family 38, member 8b [Source:NCBI gene;Acc:795255]
18. plcd4a ENSDARG00000057975 241 2.203 0.718 0.748 - - - 0.737 - - - phospholipase C, delta 4a [Source:ZFIN;Acc:ZDB-GENE-050208-654]
19. ntd5 ENSDARG00000040944 4988 1.689 - - - - - 0.865 0.824 - - ntl-dependent gene 5 [Source:ZFIN;Acc:ZDB-GENE-031030-7]
20. CABZ01079764.1 CABZ01079764.1 12103 1.686 - - - - - 0.845 0.841 - -
21. MYADML2 ENSDARG00000053953 810 1.675 - - - - - - 0.778 - 0.897 myeloid-associated differentiation marker-like 2 [Source:ZFIN;Acc:ZDB-GENE-120807-3]
22. ehd2 ehd2 1089 1.666 - - - - - 0.841 0.825 - -
23. si:dkeyp-12a9.5 3058 1.653 - - - - - 0.861 0.792 - - si:dkeyp-12a9.5
24. cog2 ENSDARG00000004037 462 1.647 - 0.731 - - - - - - 0.916 component of oligomeric golgi complex 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2671]
25. chad ENSDARG00000045071 903 1.645 - - - - - 0.834 0.811 - - chondroadherin [Source:ZFIN;Acc:ZDB-GENE-040426-1130]
26. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 1.638 - 0.727 - - - - - - 0.911 ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
27. acana ENSDARG00000035891 118 1.614 - - - - - 0.833 0.781 - - aggrecan a [Source:ZFIN;Acc:ZDB-GENE-050208-221]
28. tgfb3 ENSDARG00000019367 2327 1.61 - - - - - 0.860 0.750 - - transforming growth factor, beta 3 [Source:ZFIN;Acc:ZDB-GENE-030723-4]
29. dtnba ENSDARG00000077694 5483 1.604 - 0.861 - - - 0.743 - - - dystrobrevin, beta a [Source:ZFIN;Acc:ZDB-GENE-030131-3967]
30. larp4aa ENSDARG00000078401 2526 1.603 - 0.802 - - - - 0.801 - - La ribonucleoprotein domain family, member 4Aa [Source:ZFIN;Acc:ZDB-GENE-090313-50]
31. alpk3a ENSDARG00000078989 1992 1.602 - - - - - 0.743 - - 0.859 alpha-kinase 3a [Source:ZFIN;Acc:ZDB-GENE-050419-48]
32. nt5dc3 ENSDARG00000062949 816 1.597 - 0.768 - - - - - - 0.829 5'-nucleotidase domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-080523-3]
33. matn3b ENSDARG00000069265 856 1.594 - 0.758 - - - 0.836 - - - matrilin 3b [Source:ZFIN;Acc:ZDB-GENE-050221-9]
34. lgr6 181 1.593 - - - - - 0.802 0.791 - - leucine rich repeat containing G protein-coupled receptor 6
35. BX004880.1 BX004880.1 638 1.592 - - - - - - - 0.726 0.866
36. selm 2395 1.589 0.741 - - - - 0.848 - - - selenoprotein M
37. BX296538.3 BX296538.3 813 1.58 - - - - - - - 0.705 0.875
38. arvcfb ENSDARG00000061688 2388 1.571 - - - - - 0.734 - - 0.837 ARVCF, delta catenin family member b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
39. abi1b ENSDARG00000062991 1564 1.569 - 0.835 - - - - - - 0.734 abl-interactor 1b [Source:ZFIN;Acc:ZDB-GENE-060929-1182]
40. susd5 ENSDARG00000088277 439 1.564 - - - - - 0.761 0.803 - - sushi domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-120215-196]
41. AKAP2 AKAP2 4178 1.562 - - - - - 0.748 - - 0.814
42. svila ENSDARG00000055075, ENSDARG00000110002, ENSDARG00000114888 4078 1.559 - - - - - - 0.846 - 0.713 supervillin a [Source:ZFIN;Acc:ZDB-GENE-990706-5]
43. GJD4 ENSDARG00000116895 139 1.557 - 0.720 - - - 0.837 - - - gap junction protein delta 4 [Source:HGNC Symbol;Acc:HGNC:23296]
44. tlk1a ENSDARG00000042467 2339 1.554 - 0.772 - - - - 0.782 - - tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
45. ERBB4_1 ERBB4_1 1064 1.542 - - - - - - 0.725 - 0.817
46. ryr3 ENSDARG00000071331 6795 1.54 - 0.804 - - - 0.736 - - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
47. brd8 ENSDARG00000025071 2605 1.539 - 0.710 - - - - - - 0.829 bromodomain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030722-10]
48. IGSF10 ENSDARG00000077497 317 1.536 - - - - - 0.716 0.820 - - immunoglobulin superfamily, member 10 [Source:ZFIN;Acc:ZDB-GENE-130530-827]
49. tnnt2d ENSDARG00000002988 7590 1.535 - 0.760 - - - - 0.775 - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
50. PCDH8 ENSDARG00000102185 52 1.532 0.702 - - - - 0.830 - - - protocadherin 8 [Source:HGNC Symbol;Acc:HGNC:8660]
51. eng1a eng1a 484 1.531 - - - - - 0.705 0.826 - -
52. tppp3 ENSDARG00000030463 992 1.524 - - - - - 0.747 0.777 - - tubulin polymerization-promoting protein family member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1909]
53. LRRC29 ENSDARG00000076425 284 1.521 - 0.715 - - - 0.806 - - - leucine rich repeat containing 29 [Source:ZFIN;Acc:ZDB-GENE-030131-7165]
54. fam46bb 601 1.512 - - - - - 0.772 0.740 - - family with sequence similarity 46, member Bb
55. arl15b ENSDARG00000057995, ENSDARG00000109775 1243 1.51 - - - - - - 0.782 0.728 - ADP-ribosylation factor-like 15b [Source:ZFIN;Acc:ZDB-GENE-080813-2]
56. myhc4 ENSDARG00000035438 1322 1.508 - 0.755 - - - 0.753 - - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
57. pi15a ENSDARG00000045378 2361 1.507 - 0.708 - - - 0.799 - - - peptidase inhibitor 15a [Source:ZFIN;Acc:ZDB-GENE-040724-135]
58. sox9a ENSDARG00000003293 812 1.502 - - - - - 0.760 0.742 - - SRY (sex determining region Y)-box 9a [Source:ZFIN;Acc:ZDB-GENE-001103-1]
59. CU972452.1 CU972452.1 1046 1.493 - - - - - 0.726 0.767 - -
60. hhip ENSDARG00000060397, ENSDARG00000111482, ENSDARG00000111668 3025 1.49 - - - - - 0.759 0.731 - - hedgehog interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-4827]
61. NTN5 ENSDARG00000036422 371 1.488 - - - - - 0.764 0.724 - - netrin 5 [Source:ZFIN;Acc:ZDB-GENE-130530-593]
62. si:ch211-242b18.1 ENSDARG00000054723 2929 1.486 - 0.752 - - - - 0.734 - - si:ch211-242b18.1 [Source:ZFIN;Acc:ZDB-GENE-030131-1518]
63. slc25a12 ENSDARG00000102362 2773 1.475 - 0.773 - - - - - - 0.702 solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
64. obsl1a ENSDARG00000003684 1288 1.469 - 0.760 - - - 0.709 - - - obscurin-like 1a [Source:ZFIN;Acc:ZDB-GENE-060503-649]
65. tnnc1b ENSDARG00000037539 13945 1.464 - 0.715 - - - - 0.749 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
66. CU469518.1 CU469518.1 214 1.464 0.755 0.709 - - - - - - -
67. C13H10orf71 3489 1.464 - 0.726 - - - - 0.738 - - chromosome 13 C10orf71 homolog
68. golim4b ENSDARG00000014545 628 1.463 - - - - - 0.706 0.757 - - golgi integral membrane protein 4b [Source:ZFIN;Acc:ZDB-GENE-050327-74]
69. tgm1l1 ENSDARG00000102106 1437 1.461 - 0.758 - - - - 0.703 - - transglutaminase 1 like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-139]
70. BX322608.1 ENSDARG00000111690 326 1.459 0.752 0.707 - - - - - - -
71. nars ENSDARG00000061100 2948 1.453 - 0.748 - - - - 0.705 - - asparaginyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-1016]
72. zgc:194470 zgc:194470 210 1.44 - 0.714 - - - 0.726 - - -
73. hspb11 ENSDARG00000002204 879 1.436 - 0.726 - - - - 0.710 - - heat shock protein, alpha-crystallin-related, b11 [Source:ZFIN;Acc:ZDB-GENE-030131-5148]
74. tnnt2e ENSDARG00000045822, ENSDARG00000109924 3288 1.436 - - - - - 0.712 0.724 - - troponin T2e, cardiac [Source:ZFIN;Acc:ZDB-GENE-041210-27]
75. jph1a ENSDARG00000058603 2852 1.429 - 0.726 - - - 0.703 - - - junctophilin 1a [Source:ZFIN;Acc:ZDB-GENE-040724-233]
76. cyr61l1 ENSDARG00000035422, ENSDARG00000112039, ENSDARG00000114683 332 1.415 - - - - - 0.705 0.710 - - cysteine-rich, angiogenic inducer 61 like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-136]
77. DUSP27 ENSDARG00000099889 1197 1.415 - 0.710 - - - - 0.705 - - dual specificity phosphatase 27 [Source:ZFIN;Acc:ZDB-GENE-140513-1]
78. mov10a ENSDARG00000015829 566 0.937 - - - - - - - - 0.937 Mov10 RISC complex RNA helicase a [Source:ZFIN;Acc:ZDB-GENE-091230-8]
79. ythdf3 ENSDARG00000057939 475 0.925 - - - - - - - - 0.925 YTH N(6)-methyladenosine RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6123]
80. pglyrp5 ENSDARG00000068382, ENSDARG00000112609 120 0.924 - - - - - - - - 0.924 peptidoglycan recognition protein 5 [Source:ZFIN;Acc:ZDB-GENE-050419-71]
81. imp4 ENSDARG00000054540 1396 0.924 - - - - - - - - 0.924 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-474]
82. casp2 ENSDARG00000062052 559 0.923 - - - - - - - - 0.923 caspase 2, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-3]
83. gpr1 ENSDARG00000101366 733 0.923 - - - - - - - - 0.923 G protein-coupled receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091204-457]
84. NAALAD2 ENSDARG00000021383 704 0.922 - - - - - - - - 0.922 N-acetylated alpha-linked acidic dipeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1025]
85. CR954145.1 CR954145.1 327 0.921 - - - - - - - - 0.921
86. pon1 ENSDARG00000032496 1375 0.921 - - - - - - - - 0.921 paraoxonase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-6]
87. CCDC167 ENSDARG00000045850 1024 0.919 - - - - - - - - 0.919 coiled-coil domain containing 167 [Source:ZFIN;Acc:ZDB-GENE-041210-79]
88. KIF2A_1 ENSDARG00000043571 189 0.919 - - - - - - - - 0.919 kinesin family member 2A [Source:HGNC Symbol;Acc:HGNC:6318]
89. galnt11 ENSDARG00000063636 1188 0.919 - - - - - - - - 0.919 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) [Source:ZFIN;Acc:ZDB-GENE-060929-998]
90. rnf170 ENSDARG00000104069 838 0.919 - - - - - - - - 0.919 ring finger protein 170 [Source:ZFIN;Acc:ZDB-GENE-040426-2572]
91. GRAMD1C ENSDARG00000076238 795 0.918 - - - - - - - - 0.918 GRAM domain containing 1c [Source:ZFIN;Acc:ZDB-GENE-050506-88]
92. sema3aa ENSDARG00000019235, ENSDARG00000116240 1745 0.917 - - - - - - - - 0.917 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa [Source:ZFIN;Acc:ZDB-GENE-991209-3]
93. endog ENSDARG00000058865 679 0.917 - - - - - - - - 0.917 endonuclease G [Source:ZFIN;Acc:ZDB-GENE-050522-402]
94. zgc:113363 ENSDARG00000101206 474 0.917 - - - - - - - - 0.917 zgc:113363 [Source:ZFIN;Acc:ZDB-GENE-050327-7]
95. si:ch211-195h23.3 ENSDARG00000068431 322 0.917 - - - - - - - - 0.917 si:ch211-195h23.3 [Source:ZFIN;Acc:ZDB-GENE-070912-174]
96. FAM83H FAM83H 190 0.916 - - - - - - - - 0.916
97. ano5a ENSDARG00000015731 601 0.916 - - - - - - - - 0.916 anoctamin 5a [Source:ZFIN;Acc:ZDB-GENE-091013-2]
98. tp53i11b ENSDARG00000006025 569 0.915 - - - - - - - - 0.915 tumor protein p53 inducible protein 11b [Source:ZFIN;Acc:ZDB-GENE-030131-6328]
99. TMEM97 ENSDARG00000040553 530 0.914 - - - - - - - - 0.914 transmembrane protein 97 [Source:ZFIN;Acc:ZDB-GENE-110627-1]
100. MAP4_1 MAP4_1 1153 0.914 - - - - - - - - 0.914

There are 1035 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA