Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for irx5b

Gene Name Gene ID Reads Annotation
irx5b ENSDARG00000074070 459 iroquois homeobox 5b [Source:ZFIN;Acc:ZDB-GENE-040628-5]










Genes with expression patterns similar to irx5b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. irx5b ENSDARG00000074070 459 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 iroquois homeobox 5b [Source:ZFIN;Acc:ZDB-GENE-040628-5]
2. flrt1b ENSDARG00000075597 465 3.078 0.757 - - - - 0.862 0.721 0.738 - fibronectin leucine rich transmembrane protein 1b [Source:ZFIN;Acc:ZDB-GENE-080327-6]
3. slc17a6b ENSDARG00000041150 823 2.713 0.892 - - - - 0.975 0.846 - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
4. hmp19 2554 2.591 0.893 - - - - 0.935 0.763 - - HMP19 protein
5. gfap ENSDARG00000025301 5584 2.573 0.860 - - - - 0.896 0.817 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
6. prdm12b ENSDARG00000007430 914 2.527 0.893 - - - - 0.835 0.799 - - PR domain containing 12b [Source:ZFIN;Acc:ZDB-GENE-041114-172]
7. nrarpb ENSDARG00000018958 6225 2.527 0.844 - - - - 0.892 0.791 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
8. tuba1c ENSDARG00000055216 8384 2.504 0.784 - - - - 0.897 0.823 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
9. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.5 0.893 - - - - 0.753 0.854 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
10. dbx1a ENSDARG00000086393 3161 2.498 0.944 - - - - 0.769 0.785 - - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
11. CT030046.1 CT030046.1 190 2.496 0.851 - - - - 0.883 0.762 - -
12. ROBO3_1 ROBO3_1 468 2.496 0.744 - - - - 0.931 0.821 - -
13. atp6v0cb ENSDARG00000036577 3472 2.492 0.738 - - - - 0.936 0.818 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
14. lrrc4.1 ENSDARG00000069402 323 2.49 0.762 - - - - 0.871 0.857 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
15. olfm1b ENSDARG00000014053 1392 2.464 0.777 - - - - 0.920 0.767 - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
16. plp1a ENSDARG00000103732 3544 2.463 0.802 - - - - 0.918 0.743 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
17. mapk12b ENSDARG00000006409 2246 2.457 0.756 - - - - 0.898 0.803 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
18. ccdc28b ENSDARG00000011222 528 2.452 0.897 - - - - 0.763 0.792 - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
19. hoxc4a ENSDARG00000070338 1382 2.451 0.753 - - - - 0.910 0.788 - - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
20. spock2 ENSDARG00000075393 791 2.445 - 0.782 - - - 0.917 0.746 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-090312-170]
21. nell2b ENSDARG00000062797 854 2.442 0.808 - - - - 0.802 0.832 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
22. stmn1b ENSDARG00000033655 9491 2.44 0.714 - - - - 0.933 0.793 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
23. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.434 0.724 - - - - 0.871 0.839 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
24. vsnl1a ENSDARG00000023228 1584 2.428 0.806 - - - - 0.905 0.717 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
25. mllt11 ENSDARG00000071026 2518 2.424 0.740 - - - - 0.924 0.760 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
26. MAPK8IP1_1 MAPK8IP1_1 186 2.422 0.755 - - - - 0.938 0.729 - -
27. lhx5 ENSDARG00000057936 785 2.421 - 0.726 - - - 0.920 0.775 - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
28. pkib ENSDARG00000053110 527 2.42 0.854 - - - - 0.858 0.708 - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:ZFIN;Acc:ZDB-GENE-041014-312]
29. tox ENSDARG00000032317 9126 2.42 0.845 - - - - 0.781 0.794 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
30. TPPP2 ENSDARG00000035338, ENSDARG00000113727 298 2.42 0.712 - - - - 0.914 0.794 - - tubulin polymerization-promoting protein family member 2 [Source:ZFIN;Acc:ZDB-GENE-140106-24]
31. kcnc3a ENSDARG00000055855 1821 2.417 0.702 - - - - 0.899 0.816 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
32. lhx1a ENSDARG00000014018 958 2.405 0.808 - - - - 0.746 0.851 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
33. scg2b ENSDARG00000038574 345 2.4 - 0.726 - - - 0.937 0.737 - - secretogranin II (chromogranin C), b [Source:ZFIN;Acc:ZDB-GENE-061103-160]
34. si:ch73-21g5.7 ENSDARG00000093156 9412 2.399 0.708 - - - - 0.889 0.802 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
35. atp6v1b2 ENSDARG00000043465, ENSDARG00000113422 682 2.399 0.765 - - - - 0.839 0.795 - - ATPase H+ transporting V1 subunit B2 [Source:ZFIN;Acc:ZDB-GENE-030711-4]
36. scn1lab ENSDARG00000062744 155 2.398 0.776 - - - - 0.900 0.722 - - sodium channel, voltage-gated, type I like, alpha b [Source:ZFIN;Acc:ZDB-GENE-060906-1]
37. nadl1.1 1200 2.396 0.725 - - - - 0.900 0.771 - - neural adhesion molecule L1.1, transcript variant X1
38. amph ENSDARG00000007663 599 2.395 0.720 - - - - 0.864 0.811 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
39. fez1 ENSDARG00000023174 701 2.39 - 0.726 - - - 0.850 0.814 - - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
40. stmn2b ENSDARG00000070537 1586 2.388 0.704 - - - - 0.892 0.792 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
41. necap1 ENSDARG00000020798 612 2.383 - 0.764 - - - 0.907 0.712 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
42. dmrt3a ENSDARG00000035290, ENSDARG00000114587 115 2.383 0.752 - - - - 0.865 0.766 - - doublesex and mab-3 related transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-021220-3]
43. CU928222.1 ENSDARG00000097436 1662 2.381 0.803 - - - - 0.765 0.813 - -
44. nova2 ENSDARG00000017673 7685 2.376 0.773 - - - - 0.825 0.778 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
45. pax6a ENSDARG00000103379 3061 2.374 0.722 - - - - 0.846 0.806 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
46. SPOCK1 ENSDARG00000074644 794 2.373 0.833 - - - - 0.756 0.784 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
47. her2 ENSDARG00000038205 3219 2.371 0.814 - - - - - 0.804 - 0.753 hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
48. syt11a ENSDARG00000057913 1145 2.369 0.715 - - - - 0.901 0.753 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
49. vim ENSDARG00000010008 3551 2.351 0.799 - - - - 0.840 0.712 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
50. ric8a ENSDARG00000007247 229 2.349 0.769 - - - - 0.815 0.765 - - RIC8 guanine nucleotide exchange factor A [Source:ZFIN;Acc:ZDB-GENE-040927-18]
51. cacng8b ENSDARG00000070626 176 2.332 0.744 - - - - 0.808 0.780 - - calcium channel, voltage-dependent, gamma subunit 8b [Source:ZFIN;Acc:ZDB-GENE-100921-72]
52. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.323 - - - - - 0.751 0.818 - 0.754 SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
53. SGIP1 SGIP1 236 2.322 0.762 - - - - 0.834 0.726 - -
54. npas3b npas3b 1446 2.321 0.704 - - - - 0.837 0.780 - -
55. grin1a ENSDARG00000027828 1327 2.308 0.754 - - - - 0.759 0.795 - - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
56. nes ENSDARG00000088805 2710 2.308 0.862 - - - - 0.707 0.739 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
57. EFCC1 ENSDARG00000077826 1359 2.282 0.758 - - - - 0.757 0.767 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
58. sox2 ENSDARG00000070913 2763 2.277 0.733 - - - - 0.815 0.729 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
59. hmgb1b ENSDARG00000030479 10398 2.269 0.701 - - - - 0.815 0.753 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
60. clstn3 ENSDARG00000073883 590 2.269 0.710 - - - - 0.744 0.815 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
61. her3 ENSDARG00000076857 131 2.267 0.765 - - - - 0.779 0.723 - - hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]
62. DTX4 ENSDARG00000076302 2642 2.263 0.750 - - - - 0.786 0.727 - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
63. atp6v0a2a ENSDARG00000035538 278 2.262 0.723 - - - - 0.767 0.772 - - ATPase H+ transporting V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
64. MAP6 MAP6 643 2.244 0.738 - - - - 0.733 0.773 - -
65. TMEM57 TMEM57 260 2.232 - 0.726 - - - 0.718 0.788 - -
66. KCNIP4 ENSDARG00000088100 86 2.215 0.720 - - - - 0.765 0.730 - - potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
67. si:ch211-117c9.5 ENSDARG00000071235 154 1.811 0.953 0.858 - - - - - - - si:ch211-117c9.5 [Source:ZFIN;Acc:ZDB-GENE-110408-2]
68. si:ch211-11c15.3 si:ch211-11c15.3 1279 1.793 - - - - - 0.945 0.848 - -
69. MAP1A MAP1A 847 1.785 - - - - - 0.923 0.862 - -
70. BX957337.1 BX957337.1 1685 1.781 - - - - - 0.919 0.862 - -
71. spock3 ENSDARG00000070266, ENSDARG00000110158 934 1.774 0.922 - - - - 0.852 - - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
72. nova1 ENSDARG00000020178 4129 1.77 - - - - - 0.917 0.853 - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
73. her4.1 ENSDARG00000056732 1264 1.758 0.844 - - - - 0.914 - - - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
74. dpysl5a ENSDARG00000011141 1827 1.757 - - - - - 0.931 0.826 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
75. pcp4a ENSDARG00000053130 1024 1.748 0.933 - - - - - 0.815 - - Purkinje cell protein 4a [Source:ZFIN;Acc:ZDB-GENE-031118-105]
76. scrt2 ENSDARG00000056175 4331 1.747 - - - - - 0.925 0.822 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
77. CABZ01029738.1 CABZ01029738.1 327 1.737 0.921 - - - - - 0.816 - -
78. sncb ENSDARG00000104945 8197 1.737 0.821 - - - - 0.916 - - - synuclein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-1615]
79. stmn2a ENSDARG00000033234 2272 1.734 - - - - - 0.937 0.797 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
80. sypa ENSDARG00000042974, ENSDARG00000110528 3217 1.734 - - - - - 0.918 0.816 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
81. pcsk1nl ENSDARG00000076170 1232 1.733 - - - - - 0.954 0.779 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
82. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 1.733 - - - - - 0.922 0.811 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
83. st8sia2 ENSDARG00000018788 2183 1.731 0.804 - - - - 0.927 - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
84. sncgb ENSDARG00000109715 1014 1.73 - - - - - 0.909 0.821 - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
85. slc32a1 ENSDARG00000059775 1092 1.73 - - - - - 0.939 0.791 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
86. thsd7ba ENSDARG00000095022 231 1.728 - - - - - 0.889 0.839 - - thrombospondin, type I, domain containing 7Ba [Source:ZFIN;Acc:ZDB-GENE-070621-2]
87. TUSC5 TUSC5 1436 1.727 - - - - - 0.921 0.806 - -
88. b4galt2 ENSDARG00000077994 480 1.727 0.864 - - - - 0.863 - - - UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-070912-258]
89. pcdh1gc5 ENSDARG00000104826 10052 1.721 - - - - - 0.947 0.774 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
90. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.72 0.896 - - - - - 0.824 - - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
91. notch1b ENSDARG00000052094 7874 1.718 - - - - - 0.847 0.871 - - notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
92. cadm3 ENSDARG00000057013 1545 1.718 - - - - - 0.895 0.823 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
93. adarb1a ENSDARG00000041609 476 1.717 - - - - - 0.892 0.825 - - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
94. myt1b ENSDARG00000102879 5411 1.716 - - - - - 0.903 0.813 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
95. otpa ENSDARG00000014201 2290 1.713 - - - - - 0.910 0.803 - - orthopedia homeobox a [Source:ZFIN;Acc:ZDB-GENE-070216-1]
96. snap25a ENSDARG00000020609 4537 1.712 - - - - - 0.911 0.801 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
97. nbeaa ENSDARG00000070080 862 1.712 0.863 - - - - - 0.849 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
98. sh3gl2 sh3gl2 1305 1.711 - - - - - 0.915 0.796 - -
99. slc1a3a ENSDARG00000104431 9888 1.709 - - - - - 0.937 0.772 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
100. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 1.709 - - - - - 0.906 0.803 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]

There are 2010 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA