Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for irx3a

Gene Name Gene ID Reads Annotation
irx3a ENSDARG00000101076 3106 iroquois homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-991119-5]










Genes with expression patterns similar to irx3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. irx3a ENSDARG00000101076 3106 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 iroquois homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-991119-5]
2. her9 ENSDARG00000056438, ENSDARG00000115775 3099 2.493 0.754 - - - 0.745 0.994 - - - hairy-related 9 [Source:ZFIN;Acc:ZDB-GENE-011213-1]
3. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.292 0.788 - 0.746 - 0.758 - - - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
4. CR936437.1 CR936437.1 6465 2.227 0.764 - 0.709 - 0.754 - - - -
5. gys1 ENSDARG00000016875 2037 1.984 - - - - - 0.986 0.998 - - glycogen synthase 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1243]
6. hnrnpm ENSDARG00000061735 19428 1.927 - - - - - 0.952 0.975 - - heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
7. clvs2 ENSDARG00000053122 1390 1.865 0.873 - - - - 0.992 - - - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
8. grpel2 ENSDARG00000069421 5673 1.859 - - - - - 0.861 0.998 - - GrpE-like 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-091204-188]
9. TUBB8P7 TUBB8P7 1353 1.853 0.853 - - - - - 1.000 - -
10. vamp1 ENSDARG00000031283 3094 1.837 0.842 - - - - - 0.995 - - vesicle-associated membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2725]
11. azin1b ENSDARG00000035869, ENSDARG00000115647 9761 1.826 - - - - - 0.863 0.963 - - antizyme inhibitor 1b [Source:ZFIN;Acc:ZDB-GENE-030121-1]
12. vamp2 ENSDARG00000056877 2158 1.819 0.820 - - - - - 0.999 - - vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
13. adssl ENSDARG00000012399 2271 1.819 - - - - 0.819 - 1.000 - - adenylosuccinate synthase, like [Source:ZFIN;Acc:ZDB-GENE-020419-28]
14. pcp4a ENSDARG00000053130 1024 1.815 0.827 - - - - 0.988 - - - Purkinje cell protein 4a [Source:ZFIN;Acc:ZDB-GENE-031118-105]
15. meis1 meis1 6937 1.806 0.809 - - - - - 0.997 - -
16. sub1a ENSDARG00000053446 13383 1.781 - - - - 0.790 - 0.991 - - SUB1 homolog, transcriptional regulator a [Source:ZFIN;Acc:ZDB-GENE-050522-151]
17. rps21 ENSDARG00000025850 25954 1.772 - - - - - 0.818 0.954 - - ribosomal protein S21 [Source:ZFIN;Acc:ZDB-GENE-040426-1102]
18. dnajc8 ENSDARG00000059373 1858 1.748 - - - - - - 0.999 0.749 - DnaJ (Hsp40) homolog, subfamily C, member 8 [Source:ZFIN;Acc:ZDB-GENE-030131-66]
19. CABZ01070258.1 ENSDARG00000105687 3643 1.738 - - 0.753 - - 0.985 - - -
20. cpz ENSDARG00000075521 2356 1.734 - 0.742 - - - 0.992 - - - carboxypeptidase Z [Source:ZFIN;Acc:ZDB-GENE-090313-267]
21. mapk6 ENSDARG00000032103 6422 1.733 - 0.734 - - - - 0.999 - - mitogen-activated protein kinase 6 [Source:ZFIN;Acc:ZDB-GENE-050420-7]
22. gbx1 ENSDARG00000071418 871 1.725 - - 0.731 - - 0.994 - - - gastrulation brain homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-020117-2]
23. kif5aa ENSDARG00000098936 2428 1.708 0.709 - - - - - 0.999 - - kinesin family member 5A, a [Source:ZFIN;Acc:ZDB-GENE-070912-141]
24. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 1.704 0.714 - - - - - 0.990 - - heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
25. tp53 ENSDARG00000035559, ENSDARG00000115148 4362 1.695 - - - - 0.702 0.993 - - - tumor protein p53 [Source:ZFIN;Acc:ZDB-GENE-990415-270]
26. her2 ENSDARG00000038205 3219 1.68 0.878 - - - 0.802 - - - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
27. sox3 ENSDARG00000053569 12016 1.632 0.821 - 0.811 - - - - - - SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
28. vdac1 ENSDARG00000045132 8051 1.628 0.861 - - - 0.767 - - - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
29. tuba8l ENSDARG00000042708 48551 1.607 - - - - - 0.741 0.866 - - tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
30. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.57 0.851 - 0.719 - - - - - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
31. ccdc85ca ENSDARG00000005232 3218 1.568 0.804 - - - - - - - 0.764 coiled-coil domain containing 85C, a [Source:ZFIN;Acc:ZDB-GENE-060825-198]
32. neurog1 ENSDARG00000056130 3924 1.564 0.821 - 0.743 - - - - - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
33. tfap4 ENSDARG00000103923 2203 1.561 - 0.799 - - 0.762 - - - - transcription factor AP-4 (activating enhancer binding protein 4) [Source:ZFIN;Acc:ZDB-GENE-090810-1]
34. st8sia2 ENSDARG00000018788 2183 1.556 0.736 - - - 0.820 - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
35. papolg ENSDARG00000012141 1445 1.551 - - - - 0.776 - - - 0.775 poly(A) polymerase gamma [Source:ZFIN;Acc:ZDB-GENE-040426-1256]
36. AGO1 ENSDARG00000092644 4521 1.55 0.789 - - - 0.761 - - - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
37. hnrnpub ENSDARG00000004735 16496 1.548 0.784 - - - 0.764 - - - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
38. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.547 0.757 - - - 0.790 - - - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
39. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 1.547 0.841 - - - 0.706 - - - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
40. hmgb1b ENSDARG00000030479 10398 1.535 0.828 - 0.707 - - - - - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
41. dut ENSDARG00000106529 3120 1.533 0.750 - - - 0.783 - - - - deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
42. ZFHX3 ENSDARG00000103057 7759 1.532 0.747 - 0.785 - - - - - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
43. ywhae1 ENSDARG00000006399, ENSDARG00000109636, ENSDARG00000109789 13364 1.524 - - - - 0.708 - 0.816 - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-779]
44. CHL1 CHL1 1553 1.519 0.765 - 0.754 - - - - - -
45. ccdc94 1417 1.511 - 0.782 - - - - - - 0.729 coiled-coil domain containing 94
46. scrt1a ENSDARG00000100821 2687 1.505 0.749 - 0.756 - - - - - - scratch family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-080219-30]
47. mtss1l mtss1l 2494 1.504 0.803 - - - 0.701 - - - -
48. wasf3 wasf3 3287 1.499 0.787 - - - 0.712 - - - -
49. npas3b npas3b 1446 1.488 0.775 - 0.713 - - - - - -
50. u2af1 ENSDARG00000015325 3217 1.487 0.740 - - - 0.747 - - - - U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
51. prkar1aa ENSDARG00000076128 6565 1.484 - - - - 0.722 - - - 0.762 protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) a [Source:ZFIN;Acc:ZDB-GENE-050116-2]
52. ogfr ENSDARG00000037837 1001 1.464 - - - - 0.730 - - - 0.734 opioid growth factor receptor [Source:ZFIN;Acc:ZDB-GENE-030131-377]
53. rnd1l rnd1l 984 1.459 0.728 - - 0.731 - - - - -
54. mir454b 395 1.452 0.700 0.752 - - - - - - - microRNA 454b
55. mn1b ENSDARG00000079248 882 1.448 - - 0.720 - 0.728 - - - - meningioma 1b [Source:ZFIN;Acc:ZDB-GENE-080917-23]
56. dpysl5a ENSDARG00000011141 1827 1.441 0.717 - 0.724 - - - - - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
57. rtf1 ENSDARG00000008947 6596 1.427 0.707 - - - 0.720 - - - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
58. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 1.425 0.714 - 0.711 - - - - - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
59. ttc3 ENSDARG00000086075 2157 1.425 - - - - 0.704 - - 0.721 - tetratricopeptide repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-090313-3]
60. atf7ip ENSDARG00000069619 5495 1.421 0.716 - - 0.705 - - - - - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
61. ARHGAP35 2409 1 - - - - - - 1.000 - - Rho GTPase activating protein 35b, transcript variant X2
62. zbtb18 ENSDARG00000028228 3653 1 - - - - - - 1.000 - - zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
63. mapre1b ENSDARG00000002659 9119 0.999 - - - - - - 0.999 - - microtubule-associated protein, RP/EB family, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2256]
64. ZNF462 ENSDARG00000112909 1132 0.999 - - - - - - 0.999 - - zinc finger protein 462 [Source:HGNC Symbol;Acc:HGNC:21684]
65. rbms1a ENSDARG00000074023 2742 0.999 - - - - - - 0.999 - - RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
66. med6 ENSDARG00000034734 2711 0.999 - - - - - - 0.999 - - mediator complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-040625-61]
67. mtmr14 ENSDARG00000059642 1405 0.999 - - - - - - 0.999 - - myotubularin related protein 14 [Source:ZFIN;Acc:ZDB-GENE-030131-2649]
68. fbl ENSDARG00000053912 5891 0.999 - - - - - - 0.999 - - fibrillarin [Source:ZFIN;Acc:ZDB-GENE-040426-1936]
69. vipr2 ENSDARG00000012353, ENSDARG00000111580, ENSDARG00000115849 485 0.999 - - - - - - 0.999 - - vasoactive intestinal peptide receptor 2 [Source:ZFIN;Acc:ZDB-GENE-010406-4]
70. etv5a ENSDARG00000069763, ENSDARG00000112509, ENSDARG00000113729 1954 0.999 - - - - - - 0.999 - - ets variant 5a [Source:ZFIN;Acc:ZDB-GENE-030131-9572]
71. cux2b ENSDARG00000086345 519 0.999 - - - - - - 0.999 - - cut-like homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-081104-176]
72. degs1 ENSDARG00000007347 2481 0.999 - - - - - - 0.999 - - delta(4)-desaturase, sphingolipid 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5283]
73. mfhas1 ENSDARG00000079104, ENSDARG00000115162 921 0.999 - - - - - - 0.999 - - malignant fibrous histiocytoma amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-080917-20]
74. hoxb3a ENSDARG00000029263 5493 0.999 - - - - - - 0.999 - - homeobox B3a [Source:ZFIN;Acc:ZDB-GENE-990415-104]
75. echdc2 ENSDARG00000016607 719 0.999 - - - - - - 0.999 - - enoyl CoA hydratase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030219-147]
76. dkk2 ENSDARG00000076420 553 0.999 - - - - - - 0.999 - - dickkopf WNT signaling pathway inhibitor 2 [Source:ZFIN;Acc:ZDB-GENE-080204-14]
77. prkacba ENSDARG00000001782 1340 0.999 - - - - - - 0.999 - - protein kinase, cAMP-dependent, catalytic, beta a [Source:ZFIN;Acc:ZDB-GENE-040426-1351]
78. cd276 ENSDARG00000003061 2798 0.999 - - - - - - 0.999 - - CD276 molecule [Source:ZFIN;Acc:ZDB-GENE-070112-452]
79. xpo4 ENSDARG00000010281, ENSDARG00000109463 2010 0.999 - - - - - - 0.999 - - exportin 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3062]
80. scg3 ENSDARG00000086288, ENSDARG00000115955 1587 0.999 - - - - - - 0.999 - - secretogranin III [Source:ZFIN;Acc:ZDB-GENE-040426-1725]
81. si:dkey-256i11.1 si:dkey-256i11.1 3373 0.999 - - - - - - 0.999 - -
82. CU457815.1 ENSDARG00000115823 1005 0.999 - - - - - - 0.999 - - ankyrin repeat and SOCS box containing 15a [Source:NCBI gene;Acc:100151067]
83. galnt11 ENSDARG00000063636 1188 0.999 - - - - - - 0.999 - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) [Source:ZFIN;Acc:ZDB-GENE-060929-998]
84. TNRC18 ENSDARG00000077052 1095 0.999 - - - - - - 0.999 - - trinucleotide repeat containing 18 [Source:ZFIN;Acc:ZDB-GENE-100326-1]
85. C20H2orf44 C20H2orf44 486 0.999 - - - - - - 0.999 - -
86. CAMK2G CAMK2G 3537 0.999 - - - - - - 0.999 - -
87. CR388132.2 ENSDARG00000104041 640 0.999 - - - - - - 0.999 - -
88. rcc2 ENSDARG00000011510, ENSDARG00000115981 7997 0.999 - - - - - - 0.999 - - regulator of chromosome condensation 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2213]
89. igfbp1a ENSDARG00000099351 1717 0.999 - - - - - - 0.999 - - insulin-like growth factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-021231-1]
90. lgi2a ENSDARG00000111069 965 0.999 - - - - - - 0.999 - - leucine-rich repeat LGI family, member 2a [Source:ZFIN;Acc:ZDB-GENE-060217-2]
91. inpp5e ENSDARG00000103926 567 0.999 - - - - - - 0.999 - - inositol polyphosphate-5-phosphatase E [Source:ZFIN;Acc:ZDB-GENE-050809-23]
92. TNRC6C_1 TNRC6C_1 6574 0.999 - - - - - - 0.999 - -
93. h1fx ENSDARG00000054058 4075 0.999 - - - - - - 0.999 - - H1 histone family, member X [Source:ZFIN;Acc:ZDB-GENE-030131-1228]
94. pigo ENSDARG00000011743 928 0.999 - - - - - - 0.999 - - phosphatidylinositol glycan anchor biosynthesis, class O [Source:ZFIN;Acc:ZDB-GENE-091204-80]
95. AP2A1 ENSDARG00000054320 5591 0.999 - - - - - - 0.999 - - adaptor related protein complex 2 subunit alpha 1 [Source:ZFIN;Acc:ZDB-GENE-090302-2]
96. arrdc3a ENSDARG00000052690 2280 0.999 - - - - - - 0.999 - - arrestin domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2913]
97. SH3BGRL ENSDARG00000058302 4525 0.999 - - - - - - 0.999 - - SH3 domain binding glutamate-rich protein like [Source:ZFIN;Acc:ZDB-GENE-040426-1376]
98. CABZ01075242.1_1 ENSDARG00000114227 1012 0.999 - - - - - - 0.999 - -
99. SLC29A4 ENSDARG00000059690 470 0.999 - - - - - - 0.999 - - solute carrier family 29 (equilibrative nucleoside transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-1932]
100. prkag1 ENSDARG00000003818 2800 0.999 - - - - - - 0.999 - - protein kinase, AMP-activated, gamma 1 non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2188]

There are 965 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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