Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for irx1b

Gene Name Gene ID Reads Annotation
irx1b ENSDARG00000056594 2224 iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]










Genes with expression patterns similar to irx1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. irx1b ENSDARG00000056594 2224 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
2. neurog1 ENSDARG00000056130 3924 4.363 0.895 0.886 - - - 0.817 0.981 - 0.784 neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
3. nova2 ENSDARG00000017673 7685 4.227 0.858 0.713 - - - 0.894 0.987 - 0.775 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
4. msi1 ENSDARG00000010710 2634 4.226 0.720 0.852 - - - 0.878 0.982 - 0.794 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
5. stmn1b ENSDARG00000033655 9491 4.192 0.834 - - - 0.874 0.719 0.975 - 0.790 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
6. myt1b ENSDARG00000102879 5411 4.178 0.790 0.775 - - - 0.901 0.991 - 0.721 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
7. cspg5a ENSDARG00000069981 1699 4.007 0.832 0.719 - - - 0.738 0.951 - 0.767 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
8. gad2 ENSDARG00000015537 724 3.919 0.734 0.718 - - - 0.860 0.807 - 0.800 glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
9. epha4b ENSDARG00000011600 3110 3.511 0.870 - - - 0.882 0.823 0.936 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
10. itm2ca ENSDARG00000043448 1265 3.493 - 0.745 - - 0.913 0.886 0.949 - - integral membrane protein 2Ca [Source:ZFIN;Acc:ZDB-GENE-040718-284]
11. pcdh1gc5 ENSDARG00000104826 10052 3.473 0.834 0.833 - - - 0.835 0.971 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
12. dld ENSDARG00000020219 4928 3.466 0.718 0.835 - - 0.948 - 0.965 - - deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
13. nes ENSDARG00000088805 2710 3.461 0.881 0.722 - - - 0.898 0.960 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
14. AGO1 ENSDARG00000092644 4521 3.436 0.843 0.738 - - - 0.883 0.972 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
15. st8sia2 ENSDARG00000018788 2183 3.421 0.833 - - - - 0.836 0.922 - 0.830 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
16. CU928222.1 ENSDARG00000097436 1662 3.411 0.854 0.753 - - - 0.826 0.978 - -
17. atp1b4 ENSDARG00000053262 1337 3.395 0.775 - - - 0.917 0.785 0.918 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
18. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 3.385 0.743 - - - - 0.829 0.973 - 0.840 POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
19. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 3.376 - - - - 0.924 0.870 0.797 - 0.785 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
20. plp1a ENSDARG00000103732 3544 3.371 0.843 - - - - 0.780 0.969 - 0.779 proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
21. her4.1 ENSDARG00000056732 1264 3.37 0.821 - - - - 0.820 0.909 - 0.820 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
22. pax6a ENSDARG00000103379 3061 3.352 0.854 0.765 - - - 0.810 0.923 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
23. C8H1orf106 C8H1orf106 2690 3.345 0.857 0.760 - - - 0.783 0.945 - -
24. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 3.333 0.900 0.751 - - - 0.878 0.804 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
25. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 3.296 0.806 0.815 - - - 0.770 0.905 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
26. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 3.282 0.798 0.738 - - - 0.789 0.957 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
27. her15.2 her15.2 1701 3.281 - 0.777 - - - 0.703 0.954 - 0.847
28. mir10d-1 mir10d-1 860 3.28 0.747 0.782 - - - 0.833 0.918 - -
29. TUBB8P7_1 TUBB8P7_1 2722 3.278 0.779 0.753 - - - 0.828 0.918 - -
30. syngr3a ENSDARG00000014871 405 3.257 0.789 0.736 - - - 0.765 0.967 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
31. CABZ01111990.1 CABZ01111990.1 4374 3.257 0.729 - - - - 0.769 0.964 - 0.795
32. CABZ01029738.1 CABZ01029738.1 327 3.254 0.808 0.719 - - - 0.786 0.941 - -
33. nadl1.1 1200 3.253 0.760 0.745 - - - 0.802 0.946 - - neural adhesion molecule L1.1, transcript variant X1
34. CHL1 CHL1 1553 3.251 0.757 - - - - 0.853 0.921 - 0.720
35. snap25a ENSDARG00000020609 4537 3.242 0.759 0.738 - - - 0.822 0.923 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
36. cldn5a ENSDARG00000043716 3865 3.236 0.746 0.740 - - - 0.807 0.943 - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
37. eno2 ENSDARG00000014287 2162 3.227 0.715 0.705 - - - 0.834 0.973 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
38. slc35g2b ENSDARG00000045447 378 3.219 0.779 0.745 - - - 0.766 0.929 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
39. Sep-03 Sep-03 1124 3.214 0.780 0.731 - - - 0.820 0.883 - -
40. ROBO3_1 ROBO3_1 468 3.198 0.713 0.755 - - - 0.765 0.965 - -
41. hnrnpa3 ENSDARG00000059351 453 3.173 0.751 - - 0.755 - 0.805 0.862 - - heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
42. gad1b ENSDARG00000027419 440 3.145 0.849 - - - - 0.702 0.839 - 0.755 glutamate decarboxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030909-3]
43. ptprnb ENSDARG00000077047 2743 3.132 0.769 0.816 - - - 0.748 0.799 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
44. stmn2a ENSDARG00000033234 2272 3.097 0.709 - - - - 0.736 0.932 - 0.720 stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
45. nadl1.2 695 3.074 0.705 - - - - 0.722 0.918 - 0.729 neural adhesion molecule L1.2, transcript variant X1
46. nrxn3b ENSDARG00000062693 192 3.056 0.787 - - - - 0.705 0.835 - 0.729 neurexin 3b [Source:ZFIN;Acc:ZDB-GENE-070206-10]
47. tmem59l ENSDARG00000003655 1536 3.044 0.735 - - - - 0.709 0.834 - 0.766 transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
48. mdkb ENSDARG00000020708 5393 3.015 0.702 - - - - 0.707 0.798 - 0.808 midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
49. cd99l2 ENSDARG00000056722 5036 2.996 - 0.718 - - - 0.767 0.754 - 0.757 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
50. gfap ENSDARG00000025301 5584 2.746 0.901 - - - - 0.871 0.974 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
51. vim ENSDARG00000010008 3551 2.743 0.910 - - - - 0.890 0.943 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
52. CABZ01070258.1 ENSDARG00000105687 3643 2.726 0.849 - - - 0.913 - 0.964 - -
53. dla ENSDARG00000010791 9281 2.701 0.850 0.860 - - - - 0.991 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
54. nbeaa ENSDARG00000070080 862 2.697 0.911 - - - - 0.809 0.977 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
55. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.691 0.864 - - - - 0.864 0.963 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
56. clstn3 ENSDARG00000073883 590 2.685 0.902 - - - - 0.869 0.914 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
57. tuba1c ENSDARG00000055216 8384 2.682 0.857 - - - - 0.859 0.966 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
58. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.675 0.827 - - - - 0.857 0.991 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
59. nrarpb ENSDARG00000018958 6225 2.673 0.813 - - - - 0.882 0.978 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
60. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.667 0.815 - - - - 0.896 0.956 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
61. SPOCK1 ENSDARG00000074644 794 2.666 0.853 - - - - 0.831 0.982 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
62. ncana 1537 2.662 0.843 - - - - 0.860 0.959 - - neurocan a
63. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.657 0.824 - - - - 0.861 0.972 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
64. slc1a3a ENSDARG00000104431 9888 2.65 0.835 - - - - 0.851 0.964 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
65. AKT3 AKT3 1729 2.643 - - - - - 0.880 0.943 - 0.820
66. TUBA1A ENSDARG00000001889 25294 2.632 0.755 - - - - 0.892 0.985 - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
67. mapk12b ENSDARG00000006409 2246 2.629 0.864 - - - - 0.784 0.981 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
68. EFCC1 ENSDARG00000077826 1359 2.619 0.823 - - - - 0.901 0.895 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
69. kcnc3a ENSDARG00000055855 1821 2.618 0.848 - - - - 0.822 0.948 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
70. stx1b ENSDARG00000000503 2724 2.609 0.767 - - - - 0.888 0.954 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
71. slc18a3a ENSDARG00000006356 1285 2.606 - 0.743 - - - 0.879 0.984 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
72. stxbp1a ENSDARG00000001994 5154 2.602 - 0.896 - - - 0.762 0.944 - - syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
73. nova1 ENSDARG00000020178 4129 2.601 - 0.812 - - - 0.839 0.950 - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
74. cplx2l ENSDARG00000018997 3975 2.6 0.770 0.878 - - - - 0.952 - - complexin 2, like [Source:ZFIN;Acc:ZDB-GENE-040718-160]
75. adcyap1b ENSDARG00000027740 1539 2.598 - - - - 0.915 0.770 0.913 - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
76. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.598 0.879 - - - - 0.767 0.952 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
77. rab3ab ENSDARG00000043835 1267 2.583 0.793 - - - - 0.842 0.948 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
78. st18 663 2.582 0.823 - - - - 0.825 0.934 - - suppression of tumorigenicity 18, zinc finger
79. mllt11 ENSDARG00000071026 2518 2.582 0.817 - - - - 0.822 0.943 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
80. si:ch73-21g5.7 ENSDARG00000093156 9412 2.578 0.801 - - - - 0.789 0.988 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
81. dnajc5aa ENSDARG00000042948 2885 2.577 0.769 - - - - 0.837 0.971 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
82. STMN3 ENSDARG00000038465 1009 2.576 0.711 - - - - 0.906 0.959 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
83. CDK5R1 CDK5R1 562 2.571 0.837 - - - - 0.847 0.887 - -
84. slc32a1 ENSDARG00000059775 1092 2.571 0.815 - - - - 0.824 0.932 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
85. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 2.569 - - - - - 0.858 0.972 - 0.739 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
86. fyna ENSDARG00000011370 1679 2.565 0.864 - - - - 0.783 0.918 - - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
87. nrn1a ENSDARG00000071860 1311 2.564 - - - - - 0.826 0.947 - 0.791 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
88. atp6v0cb ENSDARG00000036577 3472 2.564 0.789 - - - - 0.790 0.985 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
89. cadm3 ENSDARG00000057013 1545 2.564 - 0.817 - - - 0.880 0.867 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
90. syt11a ENSDARG00000057913 1145 2.561 0.808 - - - - 0.802 0.951 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
91. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.559 0.851 - - - - 0.806 0.902 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
92. chat chat 463 2.559 0.768 - - - - 0.799 0.992 - -
93. UBE2QL1 ENSDARG00000079276 3474 2.557 0.829 - - - - 0.811 0.917 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
94. map7d2a ENSDARG00000068480 513 2.556 0.771 - - - - 0.864 0.921 - - MAP7 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-060526-150]
95. hmp19 2554 2.555 0.817 - - - - 0.787 0.951 - - HMP19 protein
96. scrt2 ENSDARG00000056175 4331 2.554 0.814 - - - - 0.824 0.916 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
97. dpysl3 ENSDARG00000002587 4381 2.554 0.757 - - - - 0.842 0.955 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
98. vgf ENSDARG00000105529 247 2.553 0.737 - - - - 0.854 0.962 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
99. hoxa5a ENSDARG00000102501 1667 2.553 0.841 - - - - 0.882 0.830 - - homeobox A5a [Source:ZFIN;Acc:ZDB-GENE-000823-9]
100. clstn1 ENSDARG00000031720 5286 2.551 0.774 - - - - 0.843 0.934 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]

There are 1961 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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