Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for irx1a

Gene Name Gene ID Reads Annotation
irx1a ENSDARG00000101831 644 iroquois homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040707-1]










Genes with expression patterns similar to irx1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. irx1a ENSDARG00000101831 644 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 iroquois homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040707-1]
2. dmbx1a ENSDARG00000009922 284 4.127 - - 0.832 0.851 0.798 - - 0.869 0.777 diencephalon/mesencephalon homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-020117-1]
3. efna2 efna2 428 3.355 - - 0.731 0.912 0.933 - - - 0.779
4. irx2a ENSDARG00000001785 262 3.034 - - 0.821 - 0.786 0.727 - - 0.700 iroquois homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1446]
5. eng2b eng2b 865 2.615 - - 0.848 0.893 - 0.874 - - -
6. scrt1a ENSDARG00000100821 2687 2.445 - - 0.843 - 0.833 - - 0.769 - scratch family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-080219-30]
7. wu:fc51f04 wu:fc51f04 7074 2.41 - - - 0.835 - - - 0.739 0.836
8. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 2.4 - - - - - - 0.800 0.775 0.825 cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
9. mab21l1 ENSDARG00000102047 4665 2.39 - - 0.735 0.909 - - - 0.746 - mab-21-like 1 [Source:ZFIN;Acc:ZDB-GENE-020516-1]
10. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 2.362 - - 0.736 - - - - 0.802 0.824 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
11. RLTPR 1158 2.334 - - - - - - 0.769 0.844 0.721 RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing, transcript variant X1
12. pou3f2a ENSDARG00000070220 817 2.332 - - - - 0.712 - - 0.776 0.844 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
13. si:dkey-222f2.1 ENSDARG00000043242 192 2.291 0.726 - 0.701 - 0.864 - - - - si:dkey-222f2.1 [Source:ZFIN;Acc:ZDB-GENE-050208-726]
14. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 2.252 - - - - 0.742 - - 0.755 0.755 scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
15. mex3b ENSDARG00000058369 1867 2.229 - - 0.712 - 0.793 - - 0.724 - mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
16. wfikkn2a ENSDARG00000013460 859 2.223 - - 0.701 0.785 - - - - 0.737 info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-120914-1]
17. zic1 ENSDARG00000015567 2520 2.212 - - 0.717 0.789 - - - - 0.706 zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
18. coe2 coe2 1633 2.186 - - - - - - 0.704 0.746 0.736
19. penkb ENSDARG00000036045 304 1.773 - - - - - 0.850 0.923 - - proenkephalin b [Source:ZFIN;Acc:ZDB-GENE-030729-3]
20. otx2 766 1.71 - - - 0.883 - - - - 0.827 orthodenticle homeobox 2, transcript variant X2
21. nr2e1 ENSDARG00000017107 340 1.678 - - - 0.865 - - - - 0.813 nuclear receptor subfamily 2, group E, member 1 [Source:ZFIN;Acc:ZDB-GENE-040801-127]
22. ADM ADM 122 1.661 - - - - - 0.834 0.827 - -
23. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.659 - - - - - - - 0.803 0.856 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
24. marcksa ENSDARG00000004049 2518 1.651 - - - - - - - 0.810 0.841 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
25. pcdh19 ENSDARG00000034344 2378 1.644 - - - - 0.778 - - - 0.866 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
26. slc6a14 ENSDARG00000029866 61 1.635 - 0.801 - - - 0.834 - - - solute carrier family 6 (amino acid transporter), member 14 [Source:ZFIN;Acc:ZDB-GENE-130411-2]
27. C22H1orf53 C22H1orf53 24 1.634 - - - - - 0.810 0.824 - -
28. sostdc1a ENSDARG00000068892 127 1.63 - - 0.829 - 0.801 - - - - sclerostin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-050417-64]
29. bcl11ab ENSDARG00000063153 3032 1.628 - - - 0.758 - - - - 0.870 B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
30. si:dkey-260c8.6 ENSDARG00000096233 60 1.626 - 0.816 - - - 0.810 - - - si:dkey-260c8.6 [Source:ZFIN;Acc:ZDB-GENE-120215-121]
31. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.626 - - - - - - - 0.847 0.779 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
32. lrrc9 ENSDARG00000054352 25 1.626 - - - - - 0.792 0.834 - - leucine rich repeat containing 9 [Source:ZFIN;Acc:ZDB-GENE-080917-56]
33. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.624 - - 0.819 - - - - - 0.805 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
34. COL9A1 COL9A1 264 1.623 - - 0.716 - 0.907 - - - -
35. CR382327.1 ENSDARG00000088739 56 1.62 - - 0.730 - 0.890 - - - -
36. ZFHX3 ENSDARG00000103057 7759 1.617 - - 0.874 - - - - 0.743 - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
37. METTL15 ENSDARG00000089236 39 1.615 - 0.713 - - - 0.902 - - - methyltransferase like 15 [Source:ZFIN;Acc:ZDB-GENE-130530-958]
38. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.612 - - - - - - - 0.808 0.804 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
39. dlb ENSDARG00000004232 5120 1.607 - - - - 0.781 - - - 0.826 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
40. polr2b ENSDARG00000098783 90 1.601 - - - - - 0.834 - - 0.767 polymerase (RNA) II (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-041008-1]
41. ptprna ENSDARG00000058646 1327 1.596 - - 0.849 - 0.747 - - - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
42. dpysl5a ENSDARG00000011141 1827 1.596 - - 0.801 - - - - - 0.795 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
43. CR936437.1 CR936437.1 6465 1.594 - - 0.770 - - - - - 0.824
44. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.59 - - 0.735 - - - - - 0.855 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
45. pou3f3a ENSDARG00000042032 2835 1.583 - - - - - - 0.793 - 0.790 POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
46. tuba1c ENSDARG00000055216 8384 1.583 - - - - - - - 0.769 0.814 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
47. CU459152.1 CU459152.1 407 1.582 - - - 0.770 - 0.812 - - -
48. celsr1b ENSDARG00000058259 1219 1.577 - - - 0.788 - - - - 0.789 cadherin EGF LAG seven-pass G-type receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050823-4]
49. mta2 ENSDARG00000013031 2932 1.574 - - 0.714 - - - - 0.860 - metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
50. dync1i1 ENSDARG00000060948 554 1.574 - - 0.710 - - - - - 0.864 dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
51. gap43 ENSDARG00000099744 4114 1.573 - - - - - - - 0.820 0.753 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
52. mab21l2 ENSDARG00000015266 1687 1.572 - - 0.789 - 0.783 - - - - mab-21-like 2 [Source:ZFIN;Acc:ZDB-GENE-011101-3]
53. tmpob ENSDARG00000022978 8121 1.571 - - 0.757 - - - - - 0.814 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
54. DMBX1 DMBX1 140 1.57 - - - 0.828 - - - - 0.742
55. fzd3a ENSDARG00000021664 1958 1.559 - - 0.761 - - - - - 0.798 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
56. arhgap39 ENSDARG00000100007 344 1.557 - - - - - - - 0.826 0.731 Rho GTPase activating protein 39 [Source:ZFIN;Acc:ZDB-GENE-041014-247]
57. si:ch211-202e12.3 401 1.554 - - - - - - - 0.776 0.778 si:ch211-202e12.3, transcript variant X6
58. irx7 ENSDARG00000002601 72 1.553 - - - - 0.800 - - - 0.753 iroquois homeobox 7 [Source:ZFIN;Acc:ZDB-GENE-020103-1]
59. myt1la ENSDARG00000008209 120 1.55 - - - - - - - 0.781 0.769 myelin transcription factor 1-like, a [Source:ZFIN;Acc:ZDB-GENE-041001-172]
60. u2af1 ENSDARG00000015325 3217 1.55 - - - - - - - 0.842 0.708 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
61. otx1b 96 1.548 - - - 0.788 - - - - 0.760 orthodenticle homeobox 1b
62. clvs2 ENSDARG00000053122 1390 1.543 - - - - - - - 0.760 0.783 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
63. ptprn2 ENSDARG00000035970, ENSDARG00000114075 354 1.543 - - 0.800 0.743 - - - - - protein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3758]
64. irx5a ENSDARG00000034043 1694 1.543 - - 0.762 0.781 - - - - - iroquois homeobox 5a [Source:ZFIN;Acc:ZDB-GENE-010716-2]
65. foxn4 ENSDARG00000010591 2332 1.543 - - - 0.835 - - - - 0.708 forkhead box N4 [Source:ZFIN;Acc:ZDB-GENE-990415-277]
66. tfap2d ENSDARG00000023272 308 1.542 - - - 0.719 - - - - 0.823 transcription factor AP-2 delta (activating enhancer binding protein 2 delta) [Source:ZFIN;Acc:ZDB-GENE-050913-99]
67. slc29a1a ENSDARG00000101289 2074 1.54 - - - 0.813 0.727 - - - - solute carrier family 29 (equilibrative nucleoside transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050913-138]
68. crygn1 ENSDARG00000102129 23 1.53 - - - - - 0.751 0.779 - - crystallin, gamma N1 [Source:ZFIN;Acc:ZDB-GENE-050225-1]
69. snrpc ENSDARG00000009871 9567 1.529 - - - - - - - 0.742 0.787 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
70. st18 663 1.529 - - - - - - - 0.787 0.742 suppression of tumorigenicity 18, zinc finger
71. si:ch73-21g5.7 ENSDARG00000093156 9412 1.528 - - 0.794 - - - - 0.734 - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
72. TAF15 ENSDARG00000070019 5102 1.527 - - - - - - - 0.751 0.776 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
73. ilf2 ENSDARG00000014591 14543 1.526 - - - - - - - 0.722 0.804 interleukin enhancer binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2345]
74. fez1 ENSDARG00000023174 701 1.523 - - - - - - - 0.739 0.784 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
75. hunk ENSDARG00000091317 241 1.522 - 0.774 - - - - - - 0.748 hormonally up-regulated Neu-associated kinase [Source:ZFIN;Acc:ZDB-GENE-050309-240]
76. parp1 ENSDARG00000019529 6787 1.516 - - 0.745 - - - - - 0.771 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
77. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 1.514 - - - - - - - 0.777 0.737 serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
78. tctn2 ENSDARG00000035633 84 1.513 - 0.785 - - - - 0.728 - - tectonic family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-751]
79. nbeaa ENSDARG00000070080 862 1.507 - - - - - - - 0.739 0.768 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
80. ldb1a ENSDARG00000010137 3035 1.497 - - - - - - - 0.731 0.766 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
81. LRFN5_1 LRFN5_1 96 1.496 - - - - - - 0.760 0.736 -
82. zic6 ENSDARG00000071496 402 1.495 - - - 0.778 0.717 - - - - zic family member 6 [Source:ZFIN;Acc:ZDB-GENE-061207-1]
83. snrpd3l ENSDARG00000076283 7655 1.495 - - - 0.720 - - - - 0.775 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
84. adnpa ENSDARG00000062002, ENSDARG00000115617 2009 1.494 - - - - - - - 0.759 0.735 activity-dependent neuroprotector homeobox a [Source:ZFIN;Acc:ZDB-GENE-061215-112]
85. OTOG ENSDARG00000068460 60 1.491 - - - - 0.745 0.746 - - - otogelin [Source:ZFIN;Acc:ZDB-GENE-120228-1]
86. ncl ENSDARG00000002710 16951 1.491 - - - - - - - 0.753 0.738 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
87. NMNAT3 ENSDARG00000077034 126 1.489 - 0.718 - - - 0.771 - - - nicotinamide nucleotide adenylyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:20989]
88. tmem198a ENSDARG00000042115 1694 1.488 - - 0.771 - - - - - 0.717 transmembrane protein 198a [Source:ZFIN;Acc:ZDB-GENE-070912-716]
89. mcm5 ENSDARG00000019507 6407 1.487 - - - 0.725 - - - - 0.762 minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
90. msl2a ENSDARG00000038909 1357 1.487 - - - - - - - 0.726 0.761 male-specific lethal 2 homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-449]
91. rbb4 rbb4 15541 1.486 - - 0.700 - - - - - 0.786
92. st8sia2 ENSDARG00000018788 2183 1.484 - - 0.737 0.747 - - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
93. nr4a2a ENSDARG00000017007 140 1.478 - - - - - - - 0.752 0.726 nuclear receptor subfamily 4, group A, member 2a [Source:ZFIN;Acc:ZDB-GENE-990415-184]
94. her4.3 ENSDARG00000070770 613 1.476 - - - - - - - 0.710 0.766 hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
95. lamb2l ENSDARG00000033950 952 1.475 - - 0.715 - - - 0.760 - - laminin, beta 2-like [Source:ZFIN;Acc:ZDB-GENE-030131-4205]
96. mllt11 ENSDARG00000071026 2518 1.474 - - - - - - - 0.746 0.728 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
97. SPOCK1 ENSDARG00000074644 794 1.472 - - 0.740 - - - - 0.732 - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
98. pax5 ENSDARG00000037383 319 1.471 - - - 0.701 0.770 - - - - paired box 5 [Source:ZFIN;Acc:ZDB-GENE-001030-2]
99. PPP2R2B PPP2R2B 257 1.469 - - 0.722 - - - - - 0.747
100. fsip1 83 1.468 - - - - - 0.708 0.760 - - fibrous sheath interacting protein 1

There are 1162 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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