Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for irf1b

Gene Name Gene ID Reads Annotation
irf1b ENSDARG00000043249 30 interferon regulatory factor 1b [Source:ZFIN;Acc:ZDB-GENE-041114-13]










Genes with expression patterns similar to irf1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. irf1b ENSDARG00000043249 30 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 interferon regulatory factor 1b [Source:ZFIN;Acc:ZDB-GENE-041114-13]
2. cdh10 cdh10 38 2.903 1.000 0.960 - - - 0.943 - - -
3. DNAI1 DNAI1 11 2.849 0.960 0.949 - - - - - - 0.940
4. FAM196A 82 2.744 - 0.859 0.885 - - 1.000 - - - family with sequence similarity 196 member A
5. gcnt3 ENSDARG00000060471 37 2.63 - - 0.989 - - 0.913 0.728 - - glucosaminyl (N-acetyl) transferase 3, mucin type [Source:ZFIN;Acc:ZDB-GENE-110411-253]
6. si:ch211-76l23.4 ENSDARG00000096242 202 2 1.000 - - - 1.000 - - - - si:ch211-76l23.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8310]
7. GMEB2 ENSDARG00000093240 6 1.96 - 0.960 - - - 1.000 - - - glucocorticoid modulatory element binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4371]
8. CABZ01084273.1 CABZ01084273.1 16 1.96 - 0.960 - - - 1.000 - - -
9. si:dkey-119g10.4 si:dkey-119g10.4 7 1.96 - 0.960 - - - 1.000 - - -
10. TESPA1 ENSDARG00000053311 29 1.96 - 0.960 - - - 1.000 - - - thymocyte expressed, positive selection associated 1 [Source:ZFIN;Acc:ZDB-GENE-120727-10]
11. ccdc14 ENSDARG00000098734 3 1.96 - 0.960 - - - 1.000 - - - coiled-coil domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-120215-134]
12. si:ch211-76l23.6 si:ch211-76l23.6 68 1.855 0.895 - - - - - 0.960 - -
13. irak1 ENSDARG00000025949 19 1.836 0.836 - - - - 1.000 - - - interleukin-1 receptor-associated kinase 1 [Source:ZFIN;Acc:ZDB-GENE-071116-5]
14. or115-12 ENSDARG00000044748 2 1.825 - - - - - 1.000 - - 0.825 odorant receptor, family F, subfamily 115, member 12 [Source:ZFIN;Acc:ZDB-GENE-070806-13]
15. CU302436.1_1 ENSDARG00000114500 18 1.823 1.000 - - - - 0.823 - - - si:dkey-108k21.25 [Source:NCBI gene;Acc:103909883]
16. C5H2orf42 C5H2orf42 65 1.805 0.899 - - - - 0.906 - - -
17. si:dkeyp-27e10.6 si:dkeyp-27e10.6 36 1.767 - 0.960 - - - - 0.807 - -
18. CT573356.3 CT573356.3 2 1.754 - - - - - 1.000 - - 0.754
19. bmpr1ab ENSDARG00000105045 2 1.754 - - - - 1.000 - - - 0.754 bone morphogenetic protein receptor, type IAb [Source:ZFIN;Acc:ZDB-GENE-040912-150]
20. rab11fip1a ENSDARG00000046124 69 1.754 - - - - - 0.896 0.858 - - RAB11 family interacting protein 1 (class I) a [Source:ZFIN;Acc:ZDB-GENE-051113-116]
21. CABZ01060813.1 CABZ01060813.1 12 1.754 - - - - - 1.000 - - 0.754
22. zgc:162971 ENSDARG00000101093 1 1.754 - - - - 1.000 - - - 0.754 zgc:162971 [Source:ZFIN;Acc:ZDB-GENE-070424-48]
23. HIST1H2BA ENSDARG00000116654 10 1.746 - 0.960 - 0.786 - - - - - histone cluster 1 H2B family member a [Source:HGNC Symbol;Acc:HGNC:18730]
24. SLC9B1 SLC9B1 137 1.732 0.868 0.864 - - - - - - -
25. XKR8 XKR8 9 1.728 1.000 - - - - - 0.728 - -
26. LRRC69 LRRC69 1 1.728 - - - - 1.000 - 0.728 - -
27. rbm27 ENSDARG00000060521 185 1.725 0.734 - - - - 0.991 - - - RNA binding motif protein 27 [Source:ZFIN;Acc:ZDB-GENE-110411-31]
28. PLCXD1_3 PLCXD1_3 35 1.725 - 0.960 - 0.765 - - - - -
29. zgc:113307 ENSDARG00000044894 17 1.714 - 0.960 - - - - - - 0.754 zgc:113307 [Source:ZFIN;Acc:ZDB-GENE-050522-29]
30. CR391998.1 ENSDARG00000091817 15 1.714 - 0.960 - - - - - - 0.754 putative protein TPRXL [Source:NCBI gene;Acc:101882255]
31. si:ch211-239m17.2 si:ch211-239m17.2 1 1.714 - 0.960 - - - - - - 0.754
32. si:dkey-285e18.6 ENSDARG00000098144 1 1.714 - 0.960 - - - - - - 0.754 si:dkey-285e18.6 [Source:ZFIN;Acc:ZDB-GENE-120709-86]
33. cyp2j20 ENSDARG00000094057 44 1.714 - 0.960 - - - - - - 0.754 cytochrome P450, family 2, subfamily J, polypeptide 20 [Source:ZFIN;Acc:ZDB-GENE-041210-324]
34. arsa ENSDARG00000042270 74 1.708 - - 0.971 - - 0.737 - - - arylsulfatase A [Source:ZFIN;Acc:ZDB-GENE-050320-118]
35. foxi1 ENSDARG00000104566 176 1.703 - - 0.703 - - 1.000 - - - forkhead box i1 [Source:ZFIN;Acc:ZDB-GENE-030505-1]
36. si:dkey-164n2.1 47 1.701 - 0.714 0.987 - - - - - - si:dkey-164n2.1, transcript variant X1
37. DNAJC30 DNAJC30 47 1.7 - 0.960 - - - 0.740 - - -
38. si:dkeyp-35e5.1 si:dkeyp-35e5.1 12 1.69 - 0.960 - - 0.730 - - - -
39. CR387932.1 ENSDARG00000097344 2 1.688 - 0.960 - - - - 0.728 - -
40. tbx5b ENSDARG00000092060 37 1.688 - 0.960 - - - - 0.728 - - T-box 5b [Source:ZFIN;Acc:ZDB-GENE-060601-2]
41. BX537305.1 ENSDARG00000113834 10 1.688 - 0.960 - - - - 0.728 - -
42. rdh14a ENSDARG00000039299 79 1.684 - - - - - 0.927 0.757 - - retinol dehydrogenase 14a [Source:ZFIN;Acc:ZDB-GENE-041010-124]
43. si:dkey-6n3.3 si:dkey-6n3.3 9 1.682 - 0.960 - - - - 0.722 - -
44. cd151l ENSDARG00000068629 16 1.679 - - - 0.733 - 0.946 - - - CD151 antigen, like [Source:ZFIN;Acc:ZDB-GENE-040426-1868]
45. scfd2 ENSDARG00000040005, ENSDARG00000116272 7 1.677 - 0.960 - 0.717 - - - - - sec1 family domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050320-143]
46. tap1 ENSDARG00000079766 75 1.677 - 0.960 - - - 0.717 - - - transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) [Source:ZFIN;Acc:ZDB-GENE-050517-43]
47. CABZ01075242.1 ENSDARG00000114227 9 1.676 0.716 0.960 - - - - - - -
48. pear1 ENSDARG00000060753 173 1.667 0.931 - - - - 0.736 - - - platelet endothelial aggregation receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091230-1]
49. mettl21d mettl21d 94 1.661 0.718 - - - - 0.943 - - -
50. itpa ENSDARG00000057529 104 1.661 - - - - - 0.876 0.785 - - inosine triphosphatase (nucleoside triphosphate pyrophosphatase) [Source:ZFIN;Acc:ZDB-GENE-070705-218]
51. npffr1l2 ENSDARG00000062631 127 1.657 - 0.757 0.900 - - - - - - neuropeptide FF receptor 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-060526-110]
52. UBAP1L UBAP1L 130 1.65 - - 0.833 - - - 0.817 - -
53. zgc:73340 823 1.649 - 0.914 - - - 0.735 - - - zgc:73340
54. DHDH DHDH 15 1.622 - - - 0.797 - - - - 0.825
55. ARSJ ENSDARG00000077590 684 1.603 - - 0.897 - - - 0.706 - - arylsulfatase family, member J [Source:ZFIN;Acc:ZDB-GENE-111215-1]
56. CR854827.2 ENSDARG00000097227 15 1.571 - - - - 0.704 0.867 - - -
57. tmub2 ENSDARG00000056467, ENSDARG00000109925 100 1.551 0.772 - - - - - 0.779 - - transmembrane and ubiquitin-like domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030616-254]
58. b3gat3 ENSDARG00000001939 58 1.505 - 0.777 - - - - 0.728 - - beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) [Source:ZFIN;Acc:ZDB-GENE-020419-3]
59. tubgcp5 ENSDARG00000077442 507 1.5 0.797 0.703 - - - - - - - tubulin, gamma complex associated protein 5 [Source:ZFIN;Acc:ZDB-GENE-050522-344]
60. spon2b ENSDARG00000002732 115 1.498 - 0.766 - - - - 0.732 - - spondin 2b, extracellular matrix protein [Source:ZFIN;Acc:ZDB-GENE-990415-161]
61. or106-10 ENSDARG00000091143, ENSDARG00000111913, ENSDARG00000114806 1 1.482 - - - - - - 0.728 - 0.754 odorant receptor, family G, subfamily 106, member 10 [Source:ZFIN;Acc:ZDB-GENE-070806-62]
62. flvcr2b ENSDARG00000031506 170 1.482 - - - - - 0.728 0.754 - - feline leukemia virus subgroup C cellular receptor family, member 2b [Source:ZFIN;Acc:ZDB-GENE-041210-312]
63. si:dkeyp-3f10.17 ENSDARG00000087254 1 1.482 - - - - - - 0.728 - 0.754 si:dkeyp-3f10.17 [Source:ZFIN;Acc:ZDB-GENE-081104-467]
64. saal1 ENSDARG00000018681, ENSDARG00000109471 480 1.469 - 0.729 0.740 - - - - - - serum amyloid A-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-725]
65. fpgt ENSDARG00000042139 155 1 1.000 - - - - - - - - fucose-1-phosphate guanylyltransferase [Source:ZFIN;Acc:ZDB-GENE-050522-489]
66. or102-3 ENSDARG00000074966 0 1 - - - - 1.000 - - - - odorant receptor, family C, subfamily 102, member 3 [Source:ZFIN;Acc:ZDB-GENE-010308-3]
67. si:ch211-93g21.1 ENSDARG00000093602 5 1 - - - - 1.000 - - - - si:ch211-93g21.1 [Source:ZFIN;Acc:ZDB-GENE-060503-703]
68. gcsha ENSDARG00000091655, ENSDARG00000111225 1 1 - - - - 1.000 - - - - glycine cleavage system protein H (aminomethyl carrier), a [Source:ZFIN;Acc:ZDB-GENE-050320-18]
69. calhm3 ENSDARG00000079602 4 1 - - - - 1.000 - - - - calcium homeostasis modulator 3 [Source:ZFIN;Acc:ZDB-GENE-081107-70]
70. ftr58 ENSDARG00000071238 10 1 - - - - - 1.000 - - - finTRIM family, member 58 [Source:ZFIN;Acc:ZDB-GENE-080219-44]
71. tbl2 ENSDARG00000043357 125 1 - - - - - 1.000 - - - transducin (beta)-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9012]
72. uts1 ENSDARG00000014927 35 1 - - - - - 1.000 - - - urotensin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-348]
73. scg5_1 ENSDARG00000032126, ENSDARG00000077045 6 1 - - - - 1.000 - - - - secretogranin V [Source:ZFIN;Acc:ZDB-GENE-040426-1687]
74. si:ch211-232d10.3 ENSDARG00000104008 2 1 1.000 - - - - - - - - si:ch211-232d10.3 [Source:ZFIN;Acc:ZDB-GENE-081103-4]
75. radil ENSDARG00000079779 14 1 1.000 - - - - - - - - Ras association and DIL domains [Source:ZFIN;Acc:ZDB-GENE-071206-1]
76. si:dkey-254e13.12 si:dkey-254e13.12 1 1 - - - - 1.000 - - - -
77. foxa ENSDARG00000087094, ENSDARG00000110743, ENSDARG00000115019 6 1 1.000 - - - - - - - - forkhead box A sequence [Source:ZFIN;Acc:ZDB-GENE-990415-76]
78. olfcg2 ENSDARG00000101083 8 1 - - - - - 1.000 - - - olfactory receptor C family, g2 [Source:ZFIN;Acc:ZDB-GENE-060503-253]
79. snR50 snR50 1 1 - - - - - 1.000 - - -
80. cldn10l2 ENSDARG00000105042 11 1 - - - - - 1.000 - - - claudin 10-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9598]
81. zgc:173603 zgc:173603 2 1 - - - - 1.000 - - - -
82. si:ch211-74m13.3 ENSDARG00000076144 55 1 1.000 - - - - - - - - si:ch211-74m13.3 [Source:ZFIN;Acc:ZDB-GENE-060503-219]
83. gja3 ENSDARG00000021889, ENSDARG00000116798 49 1 1.000 - - - - - - - - gap junction protein, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-031217-3]
84. si:dkey-53f14.2 si:dkey-53f14.2 4 1 1.000 - - - - - - - -
85. si:dkey-112e17.1 ENSDARG00000093201 1 1 - - - - - 1.000 - - - si:dkey-112e17.1 [Source:ZFIN;Acc:ZDB-GENE-060526-193]
86. LRCH4 ENSDARG00000068258 22 1 - - - - 1.000 - - - - leucine-rich repeats and calponin homology (CH) domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060503-749]
87. slc25a23b ENSDARG00000024708 51 1 1.000 - - - - - - - - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23b [Source:ZFIN;Acc:ZDB-GENE-040724-220]
88. zgc:153704 ENSDARG00000045979 11 1 - - - - 1.000 - - - - zgc:153704 [Source:ZFIN;Acc:ZDB-GENE-060929-1114]
89. suv39h1a ENSDARG00000026799 18 1 - - - - 1.000 - - - - suppressor of variegation 3-9 homolog 1a [Source:ZFIN;Acc:ZDB-GENE-040801-111]
90. il12bb ENSDARG00000054542 6 1 - - - - - 1.000 - - - interleukin 12B, b [Source:ZFIN;Acc:ZDB-GENE-030131-7937]
91. ptger1c ENSDARG00000078602, ENSDARG00000110042 2 1 1.000 - - - - - - - - prostaglandin E receptor 1c (subtype EP1) [Source:ZFIN;Acc:ZDB-GENE-120917-4]
92. sumf2 ENSDARG00000069497 51 1 1.000 - - - - - - - - sulfatase modifying factor 2 [Source:ZFIN;Acc:ZDB-GENE-041010-55]
93. si:ch211-117l17.4 ENSDARG00000103534 24 1 - - - - - 1.000 - - - si:ch211-117l17.4 [Source:ZFIN;Acc:ZDB-GENE-110913-102]
94. kcnh3 ENSDARG00000069560 4 1 - - - - - 1.000 - - - potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]
95. or115-8 ENSDARG00000092406 1 1 - - - - 1.000 - - - - odorant receptor, family F, subfamily 115, member 8 [Source:ZFIN;Acc:ZDB-GENE-070806-10]
96. BX004880.2 BX004880.2 83 1 - - - - - 1.000 - - -
97. CLTCL1_2 CLTCL1_2 1 1 - - - - 1.000 - - - -
98. si:dkey-57b6.4 si:dkey-57b6.4 3 1 - - - - 1.000 - - - -
99. gig2e ENSDARG00000075757, ENSDARG00000110217 2 1 - - - - 1.000 - - - - grass carp reovirus (GCRV)-induced gene 2e [Source:ZFIN;Acc:ZDB-GENE-130517-2]
100. CR392006.2 CR392006.2 0 1 - - - - 1.000 - - - -

There are 1713 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA