Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hps3

Gene Name Gene ID Reads Annotation
hps3 ENSDARG00000015749 481 Hermansky-Pudlak syndrome 3 [Source:ZFIN;Acc:ZDB-GENE-061110-115]










Genes with expression patterns similar to hps3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hps3 ENSDARG00000015749 481 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Hermansky-Pudlak syndrome 3 [Source:ZFIN;Acc:ZDB-GENE-061110-115]
2. taf12 ENSDARG00000104030, ENSDARG00000115004 163 1.722 0.925 - - - - 0.797 - - - TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-031030-5]
3. dsc2l ENSDARG00000039677 2747 1.713 0.890 - - - - - 0.823 - - desmocollin 2 like [Source:ZFIN;Acc:ZDB-GENE-031116-55]
4. rorb ENSDARG00000033498 544 1.685 0.880 - - - - - 0.805 - - RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2]
5. esrrgb ENSDARG00000011696 108 1.677 0.955 - - - - - 0.722 - - estrogen-related receptor gamma b [Source:ZFIN;Acc:ZDB-GENE-040616-4]
6. wfdc1 ENSDARG00000058003 850 1.676 0.932 0.744 - - - - - - - WAP four-disulfide core domain 1 [Source:ZFIN;Acc:ZDB-GENE-070112-352]
7. pipox ENSDARG00000055591 260 1.671 0.931 - - - - - 0.740 - - pipecolic acid oxidase [Source:ZFIN;Acc:ZDB-GENE-110627-2]
8. mff ENSDARG00000053753 905 1.669 0.920 - - - - 0.749 - - - mitochondrial fission factor [Source:ZFIN;Acc:ZDB-GENE-040426-1510]
9. foxo1a ENSDARG00000099555 288 1.665 0.880 - - - - - 0.785 - - forkhead box O1 a [Source:ZFIN;Acc:ZDB-GENE-061013-59]
10. degs2 ENSDARG00000042544 1912 1.63 0.911 - - - - - 0.719 - - delta(4)-desaturase, sphingolipid 2 [Source:ZFIN;Acc:ZDB-GENE-080228-1]
11. tshz3a ENSDARG00000087394 2455 1.617 - 0.800 - - - - 0.817 - - teashirt zinc finger homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-100322-1]
12. rab18a ENSDARG00000055291, ENSDARG00000111917 2088 1.615 0.913 - - - - - 0.702 - - RAB18A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030131-3980]
13. PROZ PROZ 288 1.612 0.811 - - - - - 0.801 - -
14. prrg4 ENSDARG00000030753 1008 1.599 0.792 - - - - - 0.807 - - proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) [Source:ZFIN;Acc:ZDB-GENE-050417-112]
15. zgc:174906 ENSDARG00000075314 2187 1.581 0.763 0.818 - - - - - - - zgc:174906 [Source:ZFIN;Acc:ZDB-GENE-030131-6125]
16. pitpnm3 ENSDARG00000055255 209 1.559 0.840 - - - - - 0.719 - - PITPNM family member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9216]
17. AL954697.2 AL954697.2 1809 1.553 0.846 - - - - - 0.707 - -
18. rab5b ENSDARG00000016059, ENSDARG00000114966 1252 1.549 0.775 - - - - - 0.774 - - RAB5B, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040426-2593]
19. rrp7a ENSDARG00000098934 1123 1.546 0.838 0.708 - - - - - - - ribosomal RNA processing 7 homolog A [Source:ZFIN;Acc:ZDB-GENE-050417-38]
20. gna11a ENSDARG00000010002, ENSDARG00000111208 1303 1.542 0.821 0.721 - - - - - - - guanine nucleotide binding protein (G protein), alpha 11a (Gq class) [Source:ZFIN;Acc:ZDB-GENE-050208-597]
21. copz1 ENSDARG00000017844 7277 1.54 0.790 - - - - - 0.750 - - coatomer protein complex, subunit zeta 1 [Source:ZFIN;Acc:ZDB-GENE-000406-6]
22. cebpa ENSDARG00000036074 751 1.522 0.790 - - - - - 0.732 - - CCAAT enhancer binding protein alpha [Source:ZFIN;Acc:ZDB-GENE-020111-2]
23. cstf2 ENSDARG00000090788 170 1.521 - - - - - 0.737 0.784 - - cleavage stimulation factor, 3' pre-RNA, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-031118-2]
24. b3gnt2l ENSDARG00000068219 1875 1.509 0.728 - - - - - 0.781 - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2, like [Source:ZFIN;Acc:ZDB-GENE-061207-60]
25. PVRL4_1 PVRL4_1 702 1.485 0.780 - - - - - 0.705 - -
26. itpkb ENSDARG00000010059 2352 1.456 0.747 - - - - - 0.709 - - inositol-trisphosphate 3-kinase B [Source:ZFIN;Acc:ZDB-GENE-041014-166]
27. emc7 ENSDARG00000012144 1608 1.452 0.734 - - - - - 0.718 - - ER membrane protein complex subunit 7 [Source:ZFIN;Acc:ZDB-GENE-041001-170]
28. n4bp2 ENSDARG00000061451, ENSDARG00000113406 238 0.97 0.970 - - - - - - - - NEDD4 binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-061103-451]
29. larp6 1695 0.97 0.970 - - - - - - - - La ribonucleoprotein domain family, member 6
30. zp2.3 ENSDARG00000090237 45 0.965 0.965 - - - - - - - - zona pellucida glycoprotein 2, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-010622-2]
31. TULP3 TULP3 433 0.96 0.960 - - - - - - - -
32. zgc:100918 ENSDARG00000087243 5451 0.957 0.957 - - - - - - - - zgc:100918 [Source:ZFIN;Acc:ZDB-GENE-040927-2]
33. TM2D2 ENSDARG00000035515 561 0.954 0.954 - - - - - - - - TM2 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040718-387]
34. gna15.1 ENSDARG00000016364 754 0.951 0.951 - - - - - - - - guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040801-146]
35. SPG21 ENSDARG00000007760 645 0.95 0.950 - - - - - - - - spastic paraplegia 21 (autosomal recessive, Mast syndrome) [Source:ZFIN;Acc:ZDB-GENE-040426-2722]
36. hps5 ENSDARG00000071062 273 0.95 0.950 - - - - - - - - Hermansky-Pudlak syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-070410-80]
37. sft2d3 ENSDARG00000070284 351 0.946 0.946 - - - - - - - - SFT2 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070907-1]
38. cpt1a cpt1a 674 0.945 0.945 - - - - - - - -
39. ELMO3 ENSDARG00000042126, ENSDARG00000110625 1900 0.945 0.945 - - - - - - - - engulfment and cell motility 3 [Source:ZFIN;Acc:ZDB-GENE-050309-39]
40. gusb ENSDARG00000063126 867 0.942 0.942 - - - - - - - - glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
41. wu:fb12e11 wu:fb12e11 2332 0.941 0.941 - - - - - - - -
42. pigq ENSDARG00000038097 486 0.94 0.940 - - - - - - - - phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
43. nenf ENSDARG00000040192 599 0.938 0.938 - - - - - - - - neudesin neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-050320-129]
44. PTDSS2 ENSDARG00000101018 881 0.935 0.935 - - - - - - - - phosphatidylserine synthase 2 [Source:ZFIN;Acc:ZDB-GENE-130424-2]
45. agrn_1 ENSDARG00000079388, ENSDARG00000110127 47 0.93 0.930 - - - - - - - - agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
46. SGPP1 ENSDARG00000060534 1802 0.928 0.928 - - - - - - - - sphingosine-1-phosphate phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-090319-2]
47. fzd7b ENSDARG00000027589 2562 0.927 0.927 - - - - - - - - frizzled class receptor 7b [Source:ZFIN;Acc:ZDB-GENE-990415-229]
48. baiap2l1a ENSDARG00000029305 30 0.927 0.927 - - - - - - - - BAI1-associated protein 2-like 1a [Source:ZFIN;Acc:ZDB-GENE-031201-1]
49. C22H19orf26 C22H19orf26 66 0.927 0.927 - - - - - - - -
50. moxd1 ENSDARG00000031136, ENSDARG00000111773 112 0.927 0.927 - - - - - - - - monooxygenase, DBH-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9320]
51. TMEM151A ENSDARG00000077986 78 0.926 0.926 - - - - - - - - transmembrane protein 151A [Source:HGNC Symbol;Acc:HGNC:28497]
52. asb6 ENSDARG00000007125 389 0.926 0.926 - - - - - - - - ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
53. mnd1 ENSDARG00000074451 182 0.925 0.925 - - - - - - - - meiotic nuclear divisions 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040801-116]
54. gpr78 gpr78 135 0.925 0.925 - - - - - - - -
55. si:ch211-191a16.5 ENSDARG00000096545 45 0.925 0.925 - - - - - - - - si:ch211-191a16.5 [Source:ZFIN;Acc:ZDB-GENE-121214-56]
56. si:dkey-7i1.4 si:dkey-7i1.4 77 0.925 0.925 - - - - - - - -
57. si:dkey-58f10.12 ENSDARG00000092680 258 0.925 0.925 - - - - - - - - si:dkey-58f10.12 [Source:ZFIN;Acc:ZDB-GENE-060526-314]
58. TMEM220 ENSDARG00000088981 28 0.925 0.925 - - - - - - - - transmembrane protein 220 [Source:ZFIN;Acc:ZDB-GENE-131121-194]
59. rnf152 ENSDARG00000087782 141 0.925 0.925 - - - - - - - - ring finger protein 152 [Source:ZFIN;Acc:ZDB-GENE-050327-84]
60. C17H14orf1 C17H14orf1 256 0.924 0.924 - - - - - - - -
61. si:dkey-164n2.1 47 0.924 0.924 - - - - - - - - si:dkey-164n2.1, transcript variant X1
62. TMEM55B TMEM55B 76 0.924 0.924 - - - - - - - -
63. CDH26 CDH26 938 0.924 0.924 - - - - - - - -
64. CU468896.2 CU468896.2 38 0.924 0.924 - - - - - - - -
65. arfrp1 ENSDARG00000057857 2840 0.924 0.924 - - - - - - - - ADP-ribosylation factor related protein 1 [Source:ZFIN;Acc:ZDB-GENE-050227-14]
66. pou5f3 ENSDARG00000044774 212 0.924 0.924 - - - - - - - - POU domain, class 5, transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-980526-485]
67. dgat1a ENSDARG00000103503 63 0.923 0.923 - - - - - - - - diacylglycerol O-acyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4600]
68. tvp23b ENSDARG00000057060 361 0.923 0.923 - - - - - - - - trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-404]
69. nek1 ENSDARG00000022350 158 0.923 0.923 - - - - - - - - NIMA-related kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040730-1]
70. lyst ENSDARG00000008575, ENSDARG00000113634 55 0.923 0.923 - - - - - - - - lysosomal trafficking regulator [Source:ZFIN;Acc:ZDB-GENE-070702-1]
71. zgc:101562 ENSDARG00000040179 90 0.923 0.923 - - - - - - - - zgc:101562 [Source:ZFIN;Acc:ZDB-GENE-041010-74]
72. lygl1 ENSDARG00000056874 309 0.922 0.922 - - - - - - - - lysozyme g-like 1 [Source:ZFIN;Acc:ZDB-GENE-040718-461]
73. SIRT5 ENSDARG00000039684 1124 0.922 0.922 - - - - - - - - sirtuin 5 [Source:ZFIN;Acc:ZDB-GENE-040718-349]
74. exd3 ENSDARG00000063140 119 0.921 0.921 - - - - - - - - exonuclease 3'-5' domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-091204-349]
75. CABZ01020207.1 CABZ01020207.1 145 0.92 0.920 - - - - - - - -
76. brf1a ENSDARG00000017835 206 0.92 0.920 - - - - - - - - BRF1, RNA polymerase III transcription initiation factor a [Source:ZFIN;Acc:ZDB-GENE-030131-6334]
77. RFESD_1 RFESD_1 65 0.92 0.920 - - - - - - - -
78. itgb1b ENSDARG00000104484 51 0.919 0.919 - - - - - - - - integrin, beta 1b [Source:ZFIN;Acc:ZDB-GENE-030909-10]
79. me3 ENSDARG00000002305 3305 0.919 0.919 - - - - - - - - malic enzyme 3, NADP(+)-dependent, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-041111-294]
80. myo1ea ENSDARG00000036179 891 0.919 0.919 - - - - - - - - myosin IE, a [Source:ZFIN;Acc:ZDB-GENE-030131-5127]
81. zgc:85932 ENSDARG00000098239 373 0.919 0.919 - - - - - - - - zgc:85932 [Source:ZFIN;Acc:ZDB-GENE-040426-2460]
82. si:ch211-229b6.1 ENSDARG00000093422 151 0.919 0.919 - - - - - - - - si:ch211-229b6.1 [Source:ZFIN;Acc:ZDB-GENE-060503-311]
83. rspry1 ENSDARG00000062558 1424 0.918 0.918 - - - - - - - - ring finger and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061026-2]
84. zgc:173726 ENSDARG00000077078 250 0.918 0.918 - - - - - - - - zgc:173726 [Source:ZFIN;Acc:ZDB-GENE-071004-108]
85. ppfibp2a ENSDARG00000061977 199 0.918 0.918 - - - - - - - - PTPRF interacting protein, binding protein 2a (liprin beta 2) [Source:ZFIN;Acc:ZDB-GENE-070705-277]
86. pole ENSDARG00000058533, ENSDARG00000115430 381 0.917 0.917 - - - - - - - - polymerase (DNA directed), epsilon [Source:ZFIN;Acc:ZDB-GENE-070705-557]
87. plekhg7 ENSDARG00000062855 308 0.917 0.917 - - - - - - - - pleckstrin homology domain containing, family G (with RhoGef domain) member 7 [Source:ZFIN;Acc:ZDB-GENE-070410-15]
88. pho ENSDARG00000035133 670 0.917 0.917 - - - - - - - - phoenix [Source:ZFIN;Acc:ZDB-GENE-030131-5935]
89. acp6 ENSDARG00000040064 197 0.916 0.916 - - - - - - - - acid phosphatase 6, lysophosphatidic [Source:ZFIN;Acc:ZDB-GENE-050208-290]
90. OTTDARG00000032278 OTTDARG00000032278 1016 0.915 0.915 - - - - - - - -
91. dgcr6 ENSDARG00000005500 479 0.914 0.914 - - - - - - - - DiGeorge syndrome critical region gene 6 [Source:ZFIN;Acc:ZDB-GENE-040912-125]
92. PRSS23 ENSDARG00000055786 564 0.914 0.914 - - - - - - - - serine protease 23 [Source:ZFIN;Acc:ZDB-GENE-030131-9149]
93. nuak2 ENSDARG00000063661 610 0.914 0.914 - - - - - - - - NUAK family, SNF1-like kinase, 2 [Source:ZFIN;Acc:ZDB-GENE-050208-563]
94. CABZ01111604.1 CABZ01111604.1 140 0.914 0.914 - - - - - - - -
95. ACTR3 ENSDARG00000091138 1739 0.913 0.913 - - - - - - - - ARP3 actin related protein 3 homolog [Source:ZFIN;Acc:ZDB-GENE-040428-2]
96. CABZ01057013.1 CABZ01057013.1 1308 0.913 0.913 - - - - - - - -
97. gne ENSDARG00000099771 617 0.913 0.913 - - - - - - - - glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1848]
98. strada ENSDARG00000037929 1614 0.912 0.912 - - - - - - - - ste20-related kinase adaptor alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6482]
99. ck2b ck2b 781 0.911 0.911 - - - - - - - -
100. nle1 ENSDARG00000057105 522 0.911 0.911 - - - - - - - - notchless homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050522-321]

There are 662 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA