Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hoxd9a

Gene Name Gene ID Reads Annotation
hoxd9a ENSDARG00000059274 3414 homeobox D9a [Source:ZFIN;Acc:ZDB-GENE-990415-121]










Genes with expression patterns similar to hoxd9a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxd9a ENSDARG00000059274 3414 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox D9a [Source:ZFIN;Acc:ZDB-GENE-990415-121]
2. hoxd10a ENSDARG00000057859 1498 3.098 - 0.719 - - - 0.745 0.802 0.832 - homeobox D10a [Source:ZFIN;Acc:ZDB-GENE-990415-116]
3. hoxa9b ENSDARG00000056819 3081 2.402 - - - - - 0.775 0.896 - 0.731 homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
4. gfra1b ENSDARG00000102564 821 2.39 - - - 0.756 - 0.843 0.791 - - gdnf family receptor alpha 1b [Source:ZFIN;Acc:ZDB-GENE-010226-3]
5. atp6v0cb ENSDARG00000036577 3472 2.341 0.755 0.776 - - - - 0.810 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
6. znf207b ENSDARG00000101277, ENSDARG00000110098, ENSDARG00000115586 4227 2.34 - 0.743 - - - 0.833 0.764 - - zinc finger protein 207, b [Source:ZFIN;Acc:ZDB-GENE-030131-7377]
7. uba1 ENSDARG00000037559 11579 2.336 0.711 - - - - 0.776 0.849 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
8. PTGES3L PTGES3L 4801 2.318 - - 0.745 - 0.820 - - 0.753 -
9. si:ch73-21k16.6 si:ch73-21k16.6 4896 2.283 - 0.804 - - - 0.761 - - 0.718
10. sema3c ENSDARG00000034300 881 2.272 0.712 - - - - 0.758 0.802 - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C [Source:ZFIN;Acc:ZDB-GENE-050513-5]
11. smyhc1 ENSDARG00000099959, ENSDARG00000115916 48476 2.26 - - 0.743 - 0.729 - - - 0.788 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
12. SLC5A7 SLC5A7 453 2.249 0.760 - - - - 0.714 0.775 - -
13. chodl ENSDARG00000034528, ENSDARG00000109583, ENSDARG00000111154 1306 2.218 0.711 - - - - 0.747 0.760 - - chondrolectin [Source:ZFIN;Acc:ZDB-GENE-050417-36]
14. cbx1b ENSDARG00000054442 1206 2.198 0.708 - - - - 0.713 0.777 - - chromobox homolog 1b (HP1 beta homolog Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040625-68]
15. luc7l ENSDARG00000055903 3357 2.195 - 0.737 - - - 0.731 0.727 - - LUC7-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-111]
16. fundc1 ENSDARG00000040822 2460 2.162 0.707 0.722 - - - - 0.733 - - FUN14 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-466]
17. atf7ip ENSDARG00000069619 5495 1.683 0.769 - - - - - 0.914 - - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
18. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 1.681 0.801 - - - - - 0.880 - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
19. ssbp4 ENSDARG00000056483 10196 1.67 - - - - - 0.814 0.856 - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
20. ddx39ab ENSDARG00000015111 11619 1.615 - - - - - 0.738 0.877 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
21. h2afva ENSDARG00000068820 16427 1.612 - - - - - 0.807 0.805 - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
22. chd7 ENSDARG00000075211 12085 1.61 - - - - - 0.755 0.855 - - chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]
23. hoxb9a ENSDARG00000056023 11856 1.607 0.739 - - - - - 0.868 - - homeobox B9a [Source:ZFIN;Acc:ZDB-GENE-990415-109]
24. snrpf ENSDARG00000105037 10241 1.601 - - - - - 0.722 0.879 - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
25. zgc:123105 ENSDARG00000003127 3061 1.6 - - - - - 0.773 0.827 - - zgc:123105 [Source:ZFIN;Acc:ZDB-GENE-051113-272]
26. khsrp ENSDARG00000026489 15738 1.595 0.747 - - - - - 0.848 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
27. npm1b ENSDARG00000037675 5448 1.595 0.762 - - - - - 0.833 - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
28. actr1 ENSDARG00000011611 3879 1.589 - - - - - 0.811 0.778 - - ARP1 actin related protein 1, centractin [Source:ZFIN;Acc:ZDB-GENE-040426-2695]
29. puf60a ENSDARG00000032175 5618 1.588 - 0.749 - - - - 0.839 - - poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
30. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 1.587 0.724 - - - - - 0.863 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
31. tox ENSDARG00000032317 9126 1.586 0.782 - - - - - 0.804 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
32. znf865 ENSDARG00000036698 15532 1.586 - - - - - 0.773 0.813 - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
33. znf292b ENSDARG00000043973 3791 1.583 - - - - - 0.738 0.845 - - zinc finger protein 292b [Source:ZFIN;Acc:ZDB-GENE-030131-9559]
34. clstn3 ENSDARG00000073883 590 1.581 0.802 - - - - - 0.779 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
35. ranbp9 ENSDARG00000061048 2687 1.573 - 0.814 - - - - 0.759 - - RAN binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-021030-5]
36. hmgb3a ENSDARG00000056725 15668 1.57 0.708 - - - - - 0.862 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
37. zgc:77262 ENSDARG00000044545 5563 1.569 0.781 - - - - - 0.788 - - zgc:77262 [Source:ZFIN;Acc:ZDB-GENE-040426-1811]
38. foxo3b ENSDARG00000042904 5046 1.569 - - - - - 0.814 0.755 - - forkhead box O3b [Source:ZFIN;Acc:ZDB-GENE-990708-6]
39. stmn1a ENSDARG00000004169 21169 1.563 0.718 - - - - - 0.845 - - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
40. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 1.561 - 0.802 - - - - 0.759 - - PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
41. pik3r3b ENSDARG00000034409, ENSDARG00000113215, ENSDARG00000117028 3213 1.559 - - - - - 0.851 0.708 - - phosphoinositide-3-kinase, regulatory subunit 3b (gamma) [Source:ZFIN;Acc:ZDB-GENE-040426-743]
42. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.557 0.790 - - - - - 0.767 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
43. ANKRD11 ENSDARG00000051886 10024 1.556 - - - - - 0.755 0.801 - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
44. setb ENSDARG00000003920 21788 1.554 - - - - - 0.740 0.814 - - SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
45. hnrnpl2 ENSDARG00000059303, ENSDARG00000114431 6633 1.553 - - - - - 0.842 0.711 - - heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]
46. ptgr1 ENSDARG00000024877, ENSDARG00000115676 4312 1.553 0.738 - - - - - 0.815 - - prostaglandin reductase 1 [Source:ZFIN;Acc:ZDB-GENE-041212-80]
47. smarca4 smarca4 9726 1.553 - - - - - 0.801 0.752 - -
48. ank2b ENSDARG00000043313 3065 1.549 - - - - - 0.784 0.765 - - ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
49. ROBO3_1 ROBO3_1 468 1.548 0.774 - - - - - 0.774 - -
50. nexn ENSDARG00000057317 10972 1.544 - - - - 0.809 - - - 0.735 nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
51. UBE2QL1 ENSDARG00000079276 3474 1.544 - - - - - 0.712 0.832 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
52. nucks1a ENSDARG00000078473 28285 1.544 - 0.769 - - - 0.775 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
53. rnps1 ENSDARG00000116743 9994 1.543 - - - - - 0.748 0.795 - - RNA binding protein S1, serine-rich domain [Source:NCBI gene;Acc:327020]
54. skib ENSDARG00000008034 6518 1.542 - - - - - 0.777 0.765 - - v-ski avian sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-990715-10]
55. atp6v1b2 ENSDARG00000043465, ENSDARG00000113422 682 1.542 0.763 - - - - - 0.779 - - ATPase H+ transporting V1 subunit B2 [Source:ZFIN;Acc:ZDB-GENE-030711-4]
56. creb1a ENSDARG00000053586 5068 1.542 - 0.826 - - - 0.716 - - - cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
57. hoxa11b ENSDARG00000007009 3983 1.54 - - - - - 0.732 0.808 - - homeobox A11b [Source:ZFIN;Acc:ZDB-GENE-990415-4]
58. msl2a ENSDARG00000038909 1357 1.538 - - - - - 0.754 0.784 - - male-specific lethal 2 homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-449]
59. pou3f3a ENSDARG00000042032 2835 1.538 - - - - - 0.713 0.825 - - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
60. dnmt3ab ENSDARG00000015566 1206 1.537 0.744 - - - - - 0.793 - - DNA (cytosine-5-)-methyltransferase 3 alpha b [Source:ZFIN;Acc:ZDB-GENE-050314-3]
61. spock3 ENSDARG00000070266, ENSDARG00000110158 934 1.537 0.743 - - - - - 0.794 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
62. EFCC1 ENSDARG00000077826 1359 1.535 0.734 - - - - - 0.801 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
63. polr2i ENSDARG00000040443, ENSDARG00000110652 879 1.531 - - - - - 0.758 0.773 - - polymerase (RNA) II (DNA directed) polypeptide I [Source:ZFIN;Acc:ZDB-GENE-041010-106]
64. pygo2 ENSDARG00000036772 2510 1.531 - - - - - 0.728 0.803 - - pygopus homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050809-108]
65. brms1 ENSDARG00000051955 900 1.528 - 0.773 - - - - 0.755 - - BRMS1, transcriptional repressor and anoikis regulator [Source:ZFIN;Acc:ZDB-GENE-030616-596]
66. CBFA2T3 ENSDARG00000079012 6799 1.527 - - - - - 0.701 0.826 - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
67. whsc1l1 8544 1.526 - - - - - 0.804 0.722 - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
68. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 1.525 - - - - - 0.758 0.767 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
69. ptenb ENSDARG00000056623 5783 1.524 - - - - - 0.736 0.788 - - phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
70. magi1a ENSDARG00000070145 547 1.524 - - - - - 0.708 0.816 - - membrane associated guanylate kinase, WW and PDZ domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-081105-13]
71. hmg20a ENSDARG00000031198 1763 1.524 - - - - - 0.735 0.789 - - high mobility group 20A [Source:ZFIN;Acc:ZDB-GENE-030131-5107]
72. CABZ01111990.1 CABZ01111990.1 4374 1.522 0.729 - - - - - 0.793 - -
73. im:7162084 im:7162084 665 1.521 - - - - - 0.754 0.767 - -
74. her2 ENSDARG00000038205 3219 1.52 0.751 - - - - - 0.769 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
75. DTX4 ENSDARG00000076302 2642 1.52 0.744 - - - - - 0.776 - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
76. FP016176.1 FP016176.1 7030 1.519 - - - - - 0.708 0.811 - -
77. zgc:66286 zgc:66286 118947 1.518 - - - - 0.790 - - 0.728 -
78. snrpc ENSDARG00000009871 9567 1.518 0.739 - - - - - 0.779 - - small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
79. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 1.516 - - - - - 0.776 0.740 - - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
80. rbb4 rbb4 15541 1.516 - - - - - 0.751 0.765 - -
81. FAM171A2 FAM171A2 707 1.515 0.759 - - - - - 0.756 - -
82. pfdn5 ENSDARG00000035043, ENSDARG00000109218, ENSDARG00000110370, ENSDARG00000113603 7566 1.514 - - - - - 0.785 0.729 - - prefoldin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6858]
83. gna11b ENSDARG00000053326 5118 1.513 - 0.790 - - - 0.723 - - - guanine nucleotide binding protein (G protein), alpha 11b (Gq class) [Source:ZFIN;Acc:ZDB-GENE-041121-9]
84. pkib ENSDARG00000053110 527 1.513 0.776 - - - - - 0.737 - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:ZFIN;Acc:ZDB-GENE-041014-312]
85. nbeaa ENSDARG00000070080 862 1.512 0.755 - - - - - 0.757 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
86. tmie ENSDARG00000069423 305 1.507 0.764 - - - - - 0.743 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
87. mxi1 ENSDARG00000040884, ENSDARG00000111950 3239 1.506 - 0.703 - - - - 0.803 - - max interactor 1, dimerization protein [Source:ZFIN;Acc:ZDB-GENE-990415-151]
88. nup155 ENSDARG00000001777 3417 1.502 - - - - - 0.743 0.759 - - nucleoporin 155 [Source:ZFIN;Acc:ZDB-GENE-040426-711]
89. pax6a ENSDARG00000103379 3061 1.501 0.734 - - - - - 0.767 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
90. fgfr4 ENSDARG00000069105 3593 1.501 - 0.797 - - - - 0.704 - - fibroblast growth factor receptor 4 [Source:ZFIN;Acc:ZDB-GENE-980526-488]
91. nr2f2 ENSDARG00000040926 5213 1.499 - - - - - 0.763 0.736 - - nuclear receptor subfamily 2, group F, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-252]
92. rac1 rac1 7341 1.498 - 0.782 - - - - 0.716 - -
93. prcc ENSDARG00000063252 2065 1.497 - - - - - 0.706 0.791 - - proline rich mitotic checkpoint control factor [Source:ZFIN;Acc:ZDB-GENE-070717-1]
94. CABZ01080599.2 CABZ01080599.2 192 1.497 - - - - - 0.761 0.736 - -
95. fyna ENSDARG00000011370 1679 1.494 0.758 - - - - - 0.736 - - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
96. tnni1al 8272 1.494 - - - - - - - 0.754 0.740 troponin I, skeletal, slow like, transcript variant X1
97. kidins220b ENSDARG00000017338 1937 1.492 0.714 - - - - 0.778 - - - kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
98. mef2ca ENSDARG00000029764 18547 1.492 - - 0.757 - 0.735 - - - - myocyte enhancer factor 2ca [Source:ZFIN;Acc:ZDB-GENE-980526-253]
99. MPP3_1 MPP3_1 88 1.492 0.717 - - - - - 0.775 - -
100. ipo7 ENSDARG00000035751 7095 1.491 - 0.759 - - - - 0.732 - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]

There are 1457 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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