Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hoxd4a

Gene Name Gene ID Reads Annotation
hoxd4a ENSDARG00000059276 1516 homeobox D4a [Source:ZFIN;Acc:ZDB-GENE-980526-214]










Genes with expression patterns similar to hoxd4a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxd4a ENSDARG00000059276 1516 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox D4a [Source:ZFIN;Acc:ZDB-GENE-980526-214]
2. si:dkeyp-1h4.8 208 1.749 - - - - - - - 0.860 0.889 si:dkeyp-1h4.8
3. MIB1 ENSDARG00000102184 3285 1.646 - 0.835 - - - - 0.811 - - mindbomb E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-030404-2]
4. meis3 ENSDARG00000002795 2509 1.624 - - - - - - - 0.784 0.840 myeloid ecotropic viral integration site 3 [Source:ZFIN;Acc:ZDB-GENE-010406-2]
5. dip2ba ENSDARG00000005350, ENSDARG00000111011, ENSDARG00000111214 1640 1.616 - 0.771 - - - - 0.845 - - disco-interacting protein 2 homolog Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
6. si:dkey-269i1.2 si:dkey-269i1.2 6364 1.599 - - - - - - - 0.703 0.896
7. G3BP2_1 G3BP2_1 2390 1.581 - 0.775 - - - - 0.806 - -
8. actl6a ENSDARG00000070828, ENSDARG00000115348 1961 1.578 - 0.733 - - - - 0.845 - - actin-like 6A [Source:ZFIN;Acc:ZDB-GENE-020419-36]
9. map7d1b ENSDARG00000104701 1655 1.576 - - - - - 0.764 0.812 - - MAP7 domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-080215-23]
10. sos2 ENSDARG00000060506 769 1.576 - 0.834 - - - 0.742 - - - son of sevenless homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-090319-5]
11. ubr5 ENSDARG00000018192 9267 1.569 - 0.749 - - - - 0.820 - - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
12. RANBP2 ENSDARG00000093125 1854 1.569 - 0.741 - - - - 0.828 - - RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848]
13. hoxb3a ENSDARG00000029263 5493 1.558 - 0.752 - - - - - - 0.806 homeobox B3a [Source:ZFIN;Acc:ZDB-GENE-990415-104]
14. gipc1 ENSDARG00000104483 2913 1.542 - 0.827 - - - - 0.715 - - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
15. hax1 ENSDARG00000036764 617 1.537 - 0.716 - - - 0.821 - - - HCLS1 associated protein X-1 [Source:ZFIN;Acc:ZDB-GENE-040718-26]
16. slc16a9b ENSDARG00000104687 826 1.521 - - - - - 0.726 0.795 - - solute carrier family 16, member 9b [Source:ZFIN;Acc:ZDB-GENE-040801-69]
17. ZC3H4 ENSDARG00000078355 1888 1.514 - - - - - 0.756 0.758 - - zinc finger CCCH-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-100330-1]
18. C21H17orf85 C21H17orf85 1167 1.513 - 0.713 - - - - 0.800 - -
19. si:ch211-173p18.3 ENSDARG00000035821 1917 1.488 - - - - - 0.774 0.714 - - si:ch211-173p18.3 [Source:ZFIN;Acc:ZDB-GENE-060503-672]
20. cops5 ENSDARG00000057624 1485 1.485 - 0.751 - - - - 0.734 - - COP9 signalosome subunit 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1686]
21. rnf220a ENSDARG00000060929 693 1.479 0.700 - - - - - 0.779 - - ring finger protein 220a [Source:ZFIN;Acc:ZDB-GENE-060929-1006]
22. TOM1L2 ENSDARG00000056394 793 1.475 - - - - - 0.724 0.751 - - target of myb1 like 2 membrane trafficking protein [Source:HGNC Symbol;Acc:HGNC:11984]
23. usp44 ENSDARG00000089861 1532 1.453 - - - - - 0.736 0.717 - - ubiquitin specific peptidase 44 [Source:ZFIN;Acc:ZDB-GENE-040426-774]
24. CYHR1 ENSDARG00000061057 2625 1.448 - 0.724 - - - 0.724 - - - cysteine/histidine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-060929-720]
25. pik3c2a ENSDARG00000060841 785 1.44 - 0.713 - - - - 0.727 - - phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
26. si:dkeyp-120h9.1 ENSDARG00000020278 3120 1.434 - 0.724 - - - 0.710 - - - si:dkeyp-120h9.1 [Source:ZFIN;Acc:ZDB-GENE-070705-534]
27. TIFA TIFA 1519 1.43 - - - 0.716 - - 0.714 - -
28. tiparp ENSDARG00000061841 3642 1.407 - 0.703 - - - 0.704 - - - TCDD-inducible poly(ADP-ribose) polymerase [Source:ZFIN;Acc:ZDB-GENE-031002-47]
29. wu:fd16d01 wu:fd16d01 328 0.935 - - - - - 0.935 - - -
30. hoxc4a ENSDARG00000070338 1382 0.927 - - - - - - - - 0.927 homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
31. tmprss9 ENSDARG00000029841 435 0.925 - - - - - - - - 0.925 transmembrane serine protease 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
32. lrrc8a lrrc8a 674 0.912 - 0.912 - - - - - - -
33. znf296 ENSDARG00000077897 658 0.912 - - - - - 0.912 - - - zinc finger protein 296 [Source:ZFIN;Acc:ZDB-GENE-050419-201]
34. zgc:174153 ENSDARG00000079376 12007 0.911 - - - - - - - - 0.911 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
35. slc25a16 ENSDARG00000057287, ENSDARG00000109352 988 0.909 - 0.909 - - - - - - - solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 [Source:ZFIN;Acc:ZDB-GENE-030131-3299]
36. ctslb ENSDARG00000039173, ENSDARG00000074306 27150 0.906 - - - - - - - - 0.906 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
37. zgc:174855 ENSDARG00000094559 33515 0.904 - - - - - - - - 0.904 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
38. he1b 11900 0.903 - - - - - - - - 0.903 hatching enzyme 1b
39. si:dkey-26g8.5 ENSDARG00000089750 7070 0.902 - - - - - - - - 0.902 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
40. he1a 48624 0.902 - - - - - - - - 0.902 hatching enzyme 1a, transcript variant X1
41. BTBD2 BTBD2 610 0.897 - - - - - 0.897 - - -
42. si:dkey-269i1.3 18775 0.895 - - - - - - - - 0.895 si:dkey-269i1.3
43. ccdc85ca ENSDARG00000005232 3218 0.886 - - - - - - 0.886 - - coiled-coil domain containing 85C, a [Source:ZFIN;Acc:ZDB-GENE-060825-198]
44. wu:fb37b09 wu:fb37b09 10685 0.88 - - - - - - - - 0.880
45. cxxc1l cxxc1l 1035 0.877 - - - - - 0.877 - - -
46. nfe2l3 ENSDARG00000019810 3682 0.877 - - - - - - 0.877 - - nuclear factor, erythroid 2-like 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2334]
47. si:dkey-269i1.4 ENSDARG00000095744, ENSDARG00000100833 1945 0.877 - - - - - - - - 0.877 si:dkey-269i1.4 [Source:ZFIN;Acc:ZDB-GENE-121214-37]
48. OMG OMG 1202 0.875 - - - - - - - - 0.875
49. FNBP4 ENSDARG00000051800 2839 0.866 - - - - - - 0.866 - - formin binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-130530-633]
50. mctp2b ENSDARG00000073970 238 0.862 - - - - - - - - 0.862 multiple C2 domains, transmembrane 2b [Source:ZFIN;Acc:ZDB-GENE-050506-136]
51. galnt12 ENSDARG00000055490 1653 0.861 - - - - - 0.861 - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 [Source:ZFIN;Acc:ZDB-GENE-060503-704]
52. zgc:101566 ENSDARG00000086342 363 0.859 - - - - - 0.859 - - - zgc:101566 [Source:ZFIN;Acc:ZDB-GENE-041010-73]
53. mterfd3 mterfd3 1004 0.857 - 0.857 - - - - - - -
54. NIPAL4 ENSDARG00000059365 597 0.85 - - - - - - - - 0.850 NIPA like domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040718-412]
55. lhfpl2b ENSDARG00000098153 132 0.85 - - - - - 0.850 - - - LHFPL tetraspan subfamily member 2b [Source:ZFIN;Acc:ZDB-GENE-050417-10]
56. hoxb7a ENSDARG00000056030 1212 0.85 - 0.850 - - - - - - - homeobox B7a [Source:ZFIN;Acc:ZDB-GENE-000329-2]
57. pxk ENSDARG00000063195 851 0.85 - 0.850 - - - - - - - PX domain containing serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-050208-393]
58. cramp1l cramp1l 700 0.845 - 0.845 - - - - - - -
59. itpr3 ENSDARG00000061741, ENSDARG00000112936 707 0.843 - - - - - 0.843 - - - inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
60. mrpl12 ENSDARG00000038768 5539 0.842 - 0.842 - - - - - - - mitochondrial ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-050417-187]
61. stat5.1 stat5.1 3337 0.841 - 0.841 - - - - - - -
62. crip1 ENSDARG00000053858 768 0.841 - 0.841 - - - - - - - cysteine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-041111-1]
63. slc45a4 ENSDARG00000077326 481 0.84 - - - - - 0.840 - - - solute carrier family 45, member 4 [Source:ZFIN;Acc:ZDB-GENE-091230-5]
64. las1l ENSDARG00000062457, ENSDARG00000114475 3987 0.838 - - - - - - 0.838 - - LAS1-like, ribosome biogenesis factor [Source:ZFIN;Acc:ZDB-GENE-030131-3625]
65. ctslb_1 ENSDARG00000039173, ENSDARG00000074306 486 0.837 - - - - - - - - 0.837 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
66. tfcp2 ENSDARG00000060306 1024 0.836 - - - - - 0.836 - - - transcription factor CP2 [Source:ZFIN;Acc:ZDB-GENE-030131-2523]
67. zdhhc8b ENSDARG00000018508 1327 0.835 - - - - - 0.835 - - - zinc finger, DHHC-type containing 8b [Source:ZFIN;Acc:ZDB-GENE-030407-3]
68. polr2a ENSDARG00000099966 5706 0.833 - - - - - 0.833 - - - polymerase (RNA) II (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-041008-78]
69. ccdc174 ENSDARG00000023858 432 0.831 - 0.831 - - - - - - - coiled-coil domain containing 174 [Source:ZFIN;Acc:ZDB-GENE-050320-54]
70. chuk ENSDARG00000011662 1668 0.831 - - - - - 0.831 - - - conserved helix-loop-helix ubiquitous kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1069]
71. DPY19L3 ENSDARG00000079013 821 0.831 - - - - - - 0.831 - - dpy-19 like C-mannosyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-100319-1]
72. TCERG1 TCERG1 324 0.83 - 0.830 - - - - - - -
73. n6amt1 ENSDARG00000115421 1456 0.829 - - - - - - 0.829 - - N-6 adenine-specific DNA methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040718-206]
74. hoxd11a ENSDARG00000059267 521 0.828 - - - - - - 0.828 - - homeobox D11a [Source:ZFIN;Acc:ZDB-GENE-990415-117]
75. sestd1 ENSDARG00000040614 1014 0.827 - 0.827 - - - - - - - SEC14 and spectrin domains 1 [Source:ZFIN;Acc:ZDB-GENE-030801-1]
76. pak2b ENSDARG00000018476 4331 0.827 - 0.827 - - - - - - - p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
77. sod1 ENSDARG00000043848 1514 0.827 - - - - - - 0.827 - - superoxide dismutase 1, soluble [Source:ZFIN;Acc:ZDB-GENE-990415-258]
78. wipf2b ENSDARG00000006712 375 0.826 - - - - - - 0.826 - - WAS/WASL interacting protein family, member 2b [Source:ZFIN;Acc:ZDB-GENE-040625-182]
79. tmub1 ENSDARG00000038787 1012 0.826 - 0.826 - - - - - - - transmembrane and ubiquitin-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2504]
80. smg6 ENSDARG00000100481 493 0.825 - 0.825 - - - - - - - SMG6 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-081107-52]
81. cetn2 ENSDARG00000101510 541 0.825 - - - - - - 0.825 - - centrin, EF-hand protein, 2 [Source:ZFIN;Acc:ZDB-GENE-091118-94]
82. tspan4 tspan4 692 0.825 - 0.825 - - - - - - -
83. znf362 znf362 869 0.825 - - - - - 0.825 - - -
84. SEMA5B SEMA5B 1316 0.825 - - - 0.825 - - - - -
85. phf10 ENSDARG00000070084 1210 0.824 - - - - - - 0.824 - - PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
86. zgc:158309 zgc:158309 2696 0.824 - 0.824 - - - - - - -
87. CCDC115 ENSDARG00000033533, ENSDARG00000109365 353 0.824 - - - - - 0.824 - - - coiled-coil domain containing 115 [Source:ZFIN;Acc:ZDB-GENE-050227-20]
88. fam173a ENSDARG00000041223, ENSDARG00000113102 639 0.823 - 0.823 - - - - - - - family with sequence similarity 173, member A [Source:ZFIN;Acc:ZDB-GENE-040625-59]
89. hoxc6b ENSDARG00000101954 967 0.823 - 0.823 - - - - - - - homeobox C6b [Source:ZFIN;Acc:ZDB-GENE-000822-1]
90. oxsr1a ENSDARG00000034189 4314 0.822 - - - - - - 0.822 - - oxidative stress responsive 1a [Source:ZFIN;Acc:ZDB-GENE-070620-25]
91. FRMD5_1 ENSDARG00000075942 883 0.822 - 0.822 - - - - - - - FERM domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28214]
92. enc1l enc1l 1326 0.822 - - - - - 0.822 - - -
93. si:dkey-228b2.5 1760 0.821 - - - - - 0.821 - - - si:dkey-228b2.5
94. snx13 ENSDARG00000013828 684 0.82 - - - - - - 0.820 - - sorting nexin 13 [Source:ZFIN;Acc:ZDB-GENE-050306-12]
95. snrnp25 ENSDARG00000020363 588 0.82 - - - - - - 0.820 - - small nuclear ribonucleoprotein 25 [Source:ZFIN;Acc:ZDB-GENE-050417-179]
96. dab2ipa ENSDARG00000069484 1138 0.819 - - - - - - 0.819 - - DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
97. acacb ENSDARG00000061994 1886 0.819 - - - - - - 0.819 - - acetyl-CoA carboxylase beta [Source:ZFIN;Acc:ZDB-GENE-060526-132]
98. mettl6 ENSDARG00000070085 366 0.819 - - - - - - 0.819 - - methyltransferase like 6 [Source:ZFIN;Acc:ZDB-GENE-040426-926]
99. xiap ENSDARG00000016143, ENSDARG00000110199 621 0.819 - - - - - 0.819 - - - X-linked inhibitor of apoptosis [Source:ZFIN;Acc:ZDB-GENE-030825-7]
100. xrcc1 ENSDARG00000009494 1346 0.819 - - - - - - 0.819 - - X-ray repair complementing defective repair in Chinese hamster cells 1 [Source:ZFIN;Acc:ZDB-GENE-040822-30]

There are 695 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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