Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hoxd3a

Gene Name Gene ID Reads Annotation
hoxd3a ENSDARG00000059280 1919 homeobox D3a [Source:ZFIN;Acc:ZDB-GENE-990415-120]










Genes with expression patterns similar to hoxd3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxd3a ENSDARG00000059280 1919 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox D3a [Source:ZFIN;Acc:ZDB-GENE-990415-120]
2. hmgb3a ENSDARG00000056725 15668 2.504 0.751 - - - - 0.875 0.878 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
3. atp6v0cb ENSDARG00000036577 3472 2.47 0.781 - - - - 0.829 0.860 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
4. slc32a1 ENSDARG00000059775 1092 2.427 0.736 - - - - 0.826 0.865 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
5. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 2.421 0.759 - - - - 0.815 0.847 - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
6. hnrnpub ENSDARG00000004735 16496 2.418 0.759 - - - - 0.803 0.856 - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
7. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.414 0.746 - - - - 0.825 0.843 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
8. dpysl3 ENSDARG00000002587 4381 2.412 0.758 - - - - 0.793 0.861 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
9. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 2.411 0.728 - - - - 0.834 0.849 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
10. tox ENSDARG00000032317 9126 2.41 0.749 - - - - 0.765 0.896 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
11. nova2 ENSDARG00000017673 7685 2.404 0.732 - - - - 0.827 0.845 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
12. tuba1c ENSDARG00000055216 8384 2.404 0.738 - - - - 0.829 0.837 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
13. hmgb1b ENSDARG00000030479 10398 2.402 0.735 - - - - 0.833 0.834 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
14. snap25a ENSDARG00000020609 4537 2.399 0.726 - - - - 0.831 0.842 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
15. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 2.395 0.752 0.739 - - - 0.904 - - - ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
16. pcdh1gc5 ENSDARG00000104826 10052 2.393 0.715 - - - - 0.841 0.837 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
17. CABZ01111990.1 CABZ01111990.1 4374 2.383 0.772 - - - - 0.778 0.833 - -
18. ZFHX3 ENSDARG00000103057 7759 2.379 0.710 - - - - 0.834 0.835 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
19. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 2.376 0.761 - - - - 0.851 0.764 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
20. STMN3 ENSDARG00000038465 1009 2.373 0.710 - - - - 0.833 0.830 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
21. tmem198a ENSDARG00000042115 1694 2.369 - 0.726 - - - 0.801 0.842 - - transmembrane protein 198a [Source:ZFIN;Acc:ZDB-GENE-070912-716]
22. stx1b ENSDARG00000000503 2724 2.364 0.731 - - - - 0.802 0.831 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
23. eno2 ENSDARG00000014287 2162 2.358 0.719 - - - - 0.819 0.820 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
24. appb ENSDARG00000055543, ENSDARG00000109552 4461 2.354 0.734 - - - - 0.823 0.797 - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
25. tmem35 ENSDARG00000052567 5685 2.351 0.773 - - - - 0.753 0.825 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
26. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 2.346 0.736 - - - - 0.754 0.856 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
27. si:ch73-21g5.7 ENSDARG00000093156 9412 2.342 0.702 - - - - 0.786 0.854 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
28. plp1a ENSDARG00000103732 3544 2.339 0.713 - - - - 0.805 0.821 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
29. epha4b ENSDARG00000011600 3110 2.332 0.710 - - - - 0.819 0.803 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
30. vgf ENSDARG00000105529 247 2.321 0.702 - - - - 0.812 0.807 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
31. stmn1b ENSDARG00000033655 9491 2.318 0.748 - - - - 0.746 0.824 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
32. necap1 ENSDARG00000020798 612 2.313 0.749 - - - - 0.761 0.803 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
33. mllt11 ENSDARG00000071026 2518 2.312 0.724 - - - - 0.810 0.778 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
34. CHL1 CHL1 1553 2.305 0.736 - - - - 0.773 0.796 - -
35. slc1a2b ENSDARG00000102453 3136 2.303 0.704 - - - - 0.791 0.808 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
36. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.292 0.702 - - - - 0.839 0.751 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
37. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.29 0.719 - - - - 0.780 0.791 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
38. clstn3 ENSDARG00000073883 590 2.284 0.713 - - - - 0.767 0.804 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
39. stmn2b ENSDARG00000070537 1586 2.282 0.717 - - - - 0.801 0.764 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
40. kif22 ENSDARG00000102624 3694 2.278 0.761 - - - - 0.763 0.754 - - kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
41. TUBB8P7_1 TUBB8P7_1 2722 2.273 0.720 - - - - 0.782 0.771 - -
42. ANKRD11 ENSDARG00000051886 10024 2.262 0.723 - - - - 0.785 0.754 - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
43. tmpob ENSDARG00000022978 8121 2.242 0.709 - - - - 0.733 0.800 - - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
44. zic1 ENSDARG00000015567 2520 2.233 0.724 - - - - 0.708 0.801 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
45. tle2 5014 2.229 0.702 0.804 - - - - 0.723 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
46. sept5a ENSDARG00000013843 1206 2.227 0.722 - - - - 0.790 0.715 - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
47. atp6v1b2 ENSDARG00000043465, ENSDARG00000113422 682 2.224 0.726 - - - - 0.770 0.728 - - ATPase H+ transporting V1 subunit B2 [Source:ZFIN;Acc:ZDB-GENE-030711-4]
48. ppp1r14ab ENSDARG00000017710, ENSDARG00000110779 3296 2.208 0.719 - - - - 0.754 0.735 - - protein phosphatase 1, regulatory (inhibitor) subunit 14Ab [Source:ZFIN;Acc:ZDB-GENE-040426-1783]
49. uba1 ENSDARG00000037559 11579 2.189 0.704 - - - - 0.776 0.709 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
50. mycla ENSDARG00000006003 1866 2.169 - 0.708 - - - 0.704 0.757 - - MYCL proto-oncogene, bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-040426-2439]
51. atl1 ENSDARG00000060481 251 2.162 0.704 - - - - 0.710 0.748 - - atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]
52. btg2 ENSDARG00000020298 6616 1.774 - - - - - 0.887 0.887 - - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
53. hoxa9b ENSDARG00000056819 3081 1.756 - - - - - 0.903 0.853 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
54. ptprna ENSDARG00000058646 1327 1.744 - - - - - 0.899 0.845 - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
55. marcksa ENSDARG00000004049 2518 1.736 - - - - - 0.848 0.888 - - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
56. myt1b ENSDARG00000102879 5411 1.731 - - - - - 0.862 0.869 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
57. TUBA1A ENSDARG00000001889 25294 1.721 - - - - - 0.876 0.845 - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
58. spock3 ENSDARG00000070266, ENSDARG00000110158 934 1.716 - - - - - 0.885 0.831 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
59. calm1a ENSDARG00000021811 4791 1.713 - - - - - 0.843 0.870 - - calmodulin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8308]
60. gap43 ENSDARG00000099744 4114 1.71 - - - - - 0.836 0.874 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
61. nrarpb ENSDARG00000018958 6225 1.709 - - - - - 0.864 0.845 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
62. khsrp ENSDARG00000026489 15738 1.703 0.828 - - - - 0.875 - - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
63. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.695 - - - - - 0.905 0.790 - - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
64. UBE2QL1 ENSDARG00000079276 3474 1.691 - - - - - 0.787 0.904 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
65. rtn1b ENSDARG00000021143 1682 1.689 - - - - - 0.784 0.905 - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
66. fzd3a ENSDARG00000021664 1958 1.688 - - - - - 0.869 0.819 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
67. chat chat 463 1.688 - - - - - 0.839 0.849 - -
68. ppp3ca ENSDARG00000004988 615 1.687 - - - - - 0.819 0.868 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
69. msi1 ENSDARG00000010710 2634 1.678 - - - - - 0.830 0.848 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
70. sumo3a ENSDARG00000028119 13447 1.674 0.812 - - - - 0.862 - - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
71. slc1a3a ENSDARG00000104431 9888 1.672 - - - - - 0.831 0.841 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
72. nova1 ENSDARG00000020178 4129 1.669 - - - - - 0.844 0.825 - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
73. gfap ENSDARG00000025301 5584 1.669 - - - - - 0.836 0.833 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
74. slc18a3a ENSDARG00000006356 1285 1.668 - - - - - 0.820 0.848 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
75. lfng ENSDARG00000037879 11783 1.667 0.775 - - - - 0.892 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
76. gnao1a ENSDARG00000016676 8184 1.666 0.777 - - - - - 0.889 - - guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
77. her4.1 ENSDARG00000056732 1264 1.665 - - - - - 0.803 0.862 - - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
78. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 1.665 - - - - - 0.817 0.848 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
79. MAP1A MAP1A 847 1.662 - - - - - 0.849 0.813 - -
80. pdzrn4 ENSDARG00000045687 362 1.662 - - - - - 0.838 0.824 - - PDZ domain containing ring finger 4 [Source:ZFIN;Acc:ZDB-GENE-041210-237]
81. pacsin1b ENSDARG00000042128 1051 1.659 - - - - - 0.857 0.802 - - protein kinase C and casein kinase substrate in neurons 1b [Source:ZFIN;Acc:ZDB-GENE-050913-35]
82. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 1.658 - - - - - 0.853 0.805 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
83. fam60al 2846 1.657 - - - - - 0.829 0.828 - - family with sequence similarity 60, member A, like
84. hoxa11b ENSDARG00000007009 3983 1.653 - - - - 0.786 - 0.867 - - homeobox A11b [Source:ZFIN;Acc:ZDB-GENE-990415-4]
85. tubb5 ENSDARG00000037997 18691 1.65 0.759 - - - - - 0.891 - - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
86. TNRC6C_2 TNRC6C_2 2444 1.649 - - - - - 0.845 0.804 - -
87. mir10d-1 mir10d-1 860 1.648 - - - - - 0.845 0.803 - -
88. ptpn5 ENSDARG00000074866 548 1.647 - - - - - 0.811 0.836 - - protein tyrosine phosphatase, non-receptor type 5 [Source:ZFIN;Acc:ZDB-GENE-101028-3]
89. sall1a ENSDARG00000074319, ENSDARG00000111696 1486 1.647 - - - - - 0.790 0.857 - - spalt-like transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-020228-2]
90. rab3ab ENSDARG00000043835 1267 1.647 - - - - - 0.829 0.818 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
91. kif1ab ENSDARG00000062024 794 1.646 - - - - - 0.767 0.879 - - kinesin family member 1Ab [Source:ZFIN;Acc:ZDB-GENE-070912-480]
92. st8sia2 ENSDARG00000018788 2183 1.646 - - - - - 0.840 0.806 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
93. aldocb ENSDARG00000019702 2111 1.645 - - - - - 0.797 0.848 - - aldolase C, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-030821-1]
94. hoxb9a ENSDARG00000056023 11856 1.643 0.795 - - - - - 0.848 - - homeobox B9a [Source:ZFIN;Acc:ZDB-GENE-990415-109]
95. AGO1 ENSDARG00000092644 4521 1.642 - - - - - 0.805 0.837 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
96. hmp19 2554 1.64 - - - - - 0.844 0.796 - - HMP19 protein
97. cpe ENSDARG00000055874, ENSDARG00000116033 2981 1.639 0.722 - - - - - 0.917 - - carboxypeptidase E [Source:ZFIN;Acc:ZDB-GENE-090313-68]
98. irx1b ENSDARG00000056594 2224 1.638 - - - - - 0.787 0.851 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
99. kcnc3a ENSDARG00000055855 1821 1.636 - - - - - 0.806 0.830 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
100. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 1.636 - - - - - 0.779 0.857 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]

There are 1291 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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