Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hoxc6a

Gene Name Gene ID Reads Annotation
hoxc6a ENSDARG00000070343 2839 homeobox C6a [Source:ZFIN;Acc:ZDB-GENE-990415-113]










Genes with expression patterns similar to hoxc6a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxc6a ENSDARG00000070343 2839 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox C6a [Source:ZFIN;Acc:ZDB-GENE-990415-113]
2. calb2b ENSDARG00000036344 2417 1.845 - - - - - 0.849 0.996 - - calbindin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1668]
3. sipa1l2 ENSDARG00000061640 4545 1.818 - - - - - 0.821 0.997 - - signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
4. elavl1 11672 1.814 - - - - - 0.816 0.998 - - ELAV like RNA binding protein 1, transcript variant X3
5. nucks1a ENSDARG00000078473 28285 1.794 - - - - - 0.810 0.984 - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
6. eif2d ENSDARG00000012929 2624 1.783 - 0.786 - - - - 0.997 - - eukaryotic translation initiation factor 2D [Source:ZFIN;Acc:ZDB-GENE-040426-1226]
7. spock3 ENSDARG00000070266, ENSDARG00000110158 934 1.776 - 0.913 - - - 0.863 - - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
8. hes6 ENSDARG00000019335 4754 1.712 0.828 - - - - 0.884 - - - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
9. MAST1_1 MAST1_1 1595 1.705 - - - - - 0.708 0.997 - -
10. PLCXD1_4 PLCXD1_4 3673 1.702 - - - - - - 0.988 - 0.714
11. rab3ab ENSDARG00000043835 1267 1.688 0.777 - - - - 0.911 - - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
12. btg2 ENSDARG00000020298 6616 1.64 - 0.820 - - - 0.820 - - - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
13. vim ENSDARG00000010008 3551 1.636 - 0.840 - - - 0.796 - - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
14. smfn ENSDARG00000009806 1280 1.618 0.754 0.864 - - - - - - - small fragment nuclease [Source:ZFIN;Acc:ZDB-GENE-040426-1709]
15. foxk2 ENSDARG00000030583 2982 1.616 - 0.788 - - - 0.828 - - - forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
16. fscn1a ENSDARG00000059680 3999 1.61 - 0.805 - - - 0.805 - - - fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
17. hmgb3a ENSDARG00000056725 15668 1.604 0.778 - - - - 0.826 - - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
18. hoxb8b ENSDARG00000054025, ENSDARG00000111056 2106 1.598 - - - - - 0.809 - - 0.789 homeobox B8b [Source:ZFIN;Acc:ZDB-GENE-980526-291]
19. ptges3b_1 ENSDARG00000089626 1670 1.592 - 0.841 - - - 0.751 - - - prostaglandin E synthase 3b (cytosolic) [Source:ZFIN;Acc:ZDB-GENE-040625-144]
20. clasp2 ENSDARG00000020345 3382 1.591 - 0.821 - - - 0.770 - - - cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
21. ckbb ENSDARG00000043257 3503 1.583 0.719 - - - - 0.864 - - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
22. gnb2 ENSDARG00000035357, ENSDARG00000105310 1523 1.573 - 0.708 - - - 0.865 - - - guanine nucleotide binding protein (G protein), beta polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-050320-65]
23. hnrnpub ENSDARG00000004735 16496 1.57 0.775 - - - - 0.795 - - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
24. b4galt6 ENSDARG00000010301 2005 1.564 0.813 - - - - 0.751 - - - UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-789]
25. ccdc85ca ENSDARG00000005232 3218 1.561 - 0.760 - - - 0.801 - - - coiled-coil domain containing 85C, a [Source:ZFIN;Acc:ZDB-GENE-060825-198]
26. ptbp2b ENSDARG00000015901 2458 1.559 - 0.858 - - - 0.701 - - - polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
27. stra6 ENSDARG00000051874, ENSDARG00000115031 1625 1.555 - 0.836 - - - - - - 0.719 stimulated by retinoic acid 6 [Source:ZFIN;Acc:ZDB-GENE-060616-252]
28. notch3 ENSDARG00000052139 15033 1.554 0.740 - - - - 0.814 - - - notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
29. hoxb8a ENSDARG00000056027 6340 1.549 - - - - 0.719 - - - 0.830 homeobox B8a [Source:ZFIN;Acc:ZDB-GENE-990415-108]
30. zswim5 ENSDARG00000055900 4243 1.547 - 0.743 - - - 0.804 - - - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
31. lfng ENSDARG00000037879 11783 1.544 0.739 - - - - 0.805 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
32. babam1 ENSDARG00000077526 776 1.538 - 0.818 - - - 0.720 - - - BRISC and BRCA1 A complex member 1 [Source:ZFIN;Acc:ZDB-GENE-040808-6]
33. rbm15b ENSDARG00000078966, ENSDARG00000112832 1888 1.53 0.716 0.814 - - - - - - - RNA binding motif protein 15B [Source:ZFIN;Acc:ZDB-GENE-080204-91]
34. nefmb ENSDARG00000043697 2052 1.522 - 0.759 - - - 0.763 - - - neurofilament, medium polypeptide b [Source:ZFIN;Acc:ZDB-GENE-070103-4]
35. RASGRF2 RASGRF2 644 1.516 0.749 - - - - 0.767 - - -
36. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 1.492 0.735 - - - - 0.757 - - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
37. myhz1.2 ENSDARG00000067995 29117 1.49 - 0.753 - - - - 0.737 - - myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
38. rbm4.3 ENSDARG00000022129 28571 1.487 0.743 - - - - 0.744 - - - RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
39. elavl3 ENSDARG00000014420 8644 1.483 - 0.776 - - - 0.707 - - - ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
40. polb ENSDARG00000003749 2049 1.467 - 0.756 - - - 0.711 - - - polymerase (DNA directed), beta [Source:ZFIN;Acc:ZDB-GENE-040830-1]
41. SLC29A1 SLC29A1 1152 1.453 - 0.714 - - - - - - 0.739
42. h2afvb ENSDARG00000116491 35692 1.449 0.701 - - - - 0.748 - - - H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
43. cops7a ENSDARG00000022788, ENSDARG00000112421 5302 1.438 0.725 - - - - 0.713 - - - COP9 constitutive photomorphogenic homolog subunit 7A [Source:ZFIN;Acc:ZDB-GENE-030131-8680]
44. rufy3 ENSDARG00000029692 3031 1.423 0.704 - - - - 0.719 - - - RUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]
45. si:ch211-113e8.10 ENSDARG00000079631 498 1.421 - 0.716 - - - 0.705 - - - si:ch211-113e8.10 [Source:ZFIN;Acc:ZDB-GENE-090313-11]
46. thrap3b ENSDARG00000098228 4396 1 - - - - - - 1.000 - - thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
47. psmb3 ENSDARG00000013938 10744 0.999 - - - - - - 0.999 - - proteasome subunit beta 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2682]
48. tia1l ENSDARG00000026476, ENSDARG00000109827 9378 0.999 - - - - - - 0.999 - - cytotoxic granule-associated RNA binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2167]
49. gpt2l ENSDARG00000019541 3397 0.999 - - - - - - 0.999 - - glutamic pyruvate transaminase (alanine aminotransferase) 2, like [Source:ZFIN;Acc:ZDB-GENE-050302-11]
50. mcm5 ENSDARG00000019507 6407 0.999 - - - - - - 0.999 - - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
51. m6pr ENSDARG00000018432 1411 0.997 - - - - - - 0.997 - - mannose-6-phosphate receptor (cation dependent) [Source:ZFIN;Acc:ZDB-GENE-040426-2285]
52. TUB ENSDARG00000062165, ENSDARG00000111083 871 0.997 - - - - - - 0.997 - - tubby bipartite transcription factor [Source:ZFIN;Acc:ZDB-GENE-121009-1]
53. cd2bp2 ENSDARG00000027357, ENSDARG00000115040, ENSDARG00000115297 1808 0.997 - - - - - - 0.997 - - CD2 (cytoplasmic tail) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-925]
54. shoc2 ENSDARG00000040853, ENSDARG00000112058, ENSDARG00000116564 2264 0.997 - - - - - - 0.997 - - SHOC2 leucine-rich repeat scaffold protein [Source:ZFIN;Acc:ZDB-GENE-050208-523]
55. dcun1d1 ENSDARG00000099642 2043 0.997 - - - - - - 0.997 - - DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5443]
56. zgc:92066 ENSDARG00000031776, ENSDARG00000116586 12826 0.997 - - - - - - 0.997 - - zgc:92066 [Source:ZFIN;Acc:ZDB-GENE-040718-72]
57. zgc:73340 823 0.997 - - - - - - 0.997 - - zgc:73340
58. oxr1b ENSDARG00000063310 929 0.997 - - - - - - 0.997 - - oxidation resistance 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2438]
59. TMEM45A ENSDARG00000070743 1669 0.997 - - - - - - 0.997 - - transmembrane protein 45a [Source:ZFIN;Acc:ZDB-GENE-050522-34]
60. mrpl13 ENSDARG00000056903 2768 0.997 - - - - - - 0.997 - - mitochondrial ribosomal protein L13 [Source:ZFIN;Acc:ZDB-GENE-050522-167]
61. rbfox2 ENSDARG00000052182 6621 0.997 - - - - - - 0.997 - - RNA binding fox-1 homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2464]
62. spen ENSDARG00000074245, ENSDARG00000116696 3054 0.997 - - - - - - 0.997 - - spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]
63. myo10 ENSDARG00000017004 2191 0.997 - - - - - - 0.997 - - myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
64. CRELD1 794 0.997 - - - - - - 0.997 - - cysteine rich with EGF like domains 1
65. mid2 ENSDARG00000034871 1001 0.997 - - - - - - 0.997 - - midline 2 [Source:ZFIN;Acc:ZDB-GENE-090220-1]
66. map3k1 ENSDARG00000098405 3043 0.997 - - - - - - 0.997 - - mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-090313-412]
67. mtp_1 3298 0.996 - - - - - - 0.996 - - microsomal triglyceride transfer protein
68. eif5 ENSDARG00000003681 7986 0.996 - - - - - - 0.996 - - eukaryotic translation initiation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-975]
69. wu:fb12e11 wu:fb12e11 2332 0.996 - - - - - - 0.996 - -
70. aldh9a1b ENSDARG00000037061 2638 0.996 - - - - - - 0.996 - - aldehyde dehydrogenase 9 family, member A1b [Source:ZFIN;Acc:ZDB-GENE-040120-5]
71. lamb2 ENSDARG00000002084 3265 0.996 - - - - - - 0.996 - - laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
72. psmd14 ENSDARG00000063100 15711 0.995 - - - - - - 0.995 - - proteasome 26S subunit, non-ATPase 14 [Source:ZFIN;Acc:ZDB-GENE-070410-56]
73. pak2a ENSDARG00000068177 8931 0.994 - - - - - - 0.994 - - p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
74. khdrbs1b ENSDARG00000070475 18157 0.994 - - - - - - 0.994 - - KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344]
75. tp63 ENSDARG00000044356, ENSDARG00000113627 5686 0.994 - - - - - - 0.994 - - tumor protein p63 [Source:ZFIN;Acc:ZDB-GENE-030819-1]
76. AL929007.1 AL929007.1 3649 0.993 - - - - - - 0.993 - -
77. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 0.993 - - - - - - 0.993 - - high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
78. mdh1a mdh1a 11035 0.992 - - - - - - 0.992 - -
79. IGFN1 IGFN1 5030 0.991 - - - - - - 0.991 - -
80. MYOM2_1 MYOM2_1 4054 0.991 - - - - - - 0.991 - -
81. vtna ENSDARG00000055388 2635 0.991 - - - - - - 0.991 - - vitronectin a [Source:ZFIN;Acc:ZDB-GENE-050522-440]
82. ddost ENSDARG00000037318 10904 0.991 - - - - - - 0.991 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-040426-2147]
83. cox7a2a ENSDARG00000053217 12564 0.99 - - - - - - 0.990 - - cytochrome c oxidase subunit 7A2a [Source:ZFIN;Acc:ZDB-GENE-050522-153]
84. rps11 ENSDARG00000053058 16233 0.99 - - - - - - 0.990 - - ribosomal protein S11 [Source:ZFIN;Acc:ZDB-GENE-040426-2701]
85. gart ENSDARG00000101089 6062 0.99 - - - - - - 0.990 - - phosphoribosylglycinamide formyltransferase [Source:ZFIN;Acc:ZDB-GENE-000616-14]
86. hnrnph1l ENSDARG00000005551 8727 0.99 - - - - - - 0.990 - - heterogeneous nuclear ribonucleoprotein H1, like [Source:ZFIN;Acc:ZDB-GENE-030131-275]
87. marcksl1b ENSDARG00000035715 37390 0.989 - - - - - - 0.989 - - MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
88. s100v2 ENSDARG00000070702 8645 0.988 - - - - - - 0.988 - - S100 calcium binding protein V2 [Source:ZFIN;Acc:ZDB-GENE-030131-8909]
89. ank1 ank1 5209 0.988 - - - - - - 0.988 - -
90. ap3m1 ENSDARG00000029928 3772 0.988 - - - - - - 0.988 - - adaptor related protein complex 3 subunit mu 1 [Source:ZFIN;Acc:ZDB-GENE-021015-2]
91. zgc:113232 ENSDARG00000040118, ENSDARG00000116977 5865 0.979 - - - - - - 0.979 - - zgc:113232 [Source:ZFIN;Acc:ZDB-GENE-050327-86]
92. serf2 ENSDARG00000074340, ENSDARG00000117120 21385 0.977 - - - - - - 0.977 - - small EDRK-rich factor 2 [Source:ZFIN;Acc:ZDB-GENE-041108-1]
93. pmp22a ENSDARG00000105223, ENSDARG00000115339 9849 0.976 - - - - - - 0.976 - - peripheral myelin protein 22a [Source:ZFIN;Acc:ZDB-GENE-030131-6757]
94. eif1b ENSDARG00000012688 34711 0.97 - - - - - - 0.970 - - eukaryotic translation initiation factor 1B [Source:ZFIN;Acc:ZDB-GENE-030131-956]
95. rangap1a ENSDARG00000041317 1456 0.956 - 0.956 - - - - - - - RAN GTPase activating protein 1a [Source:ZFIN;Acc:ZDB-GENE-060929-492]
96. eef1g ENSDARG00000056119 52958 0.953 - - - - - - 0.953 - - eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
97. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 0.943 - - - - - 0.943 - - - ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
98. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 46072 0.939 - - - - - - 0.939 - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
99. ddx51 ENSDARG00000025854 691 0.938 - 0.938 - - - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Source:ZFIN;Acc:ZDB-GENE-040927-28]
100. chek1 ENSDARG00000104765 1029 0.929 - 0.929 - - - - - - - checkpoint kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-896]

There are 1264 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA