Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hoxc4a

Gene Name Gene ID Reads Annotation
hoxc4a ENSDARG00000070338 1382 homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]










Genes with expression patterns similar to hoxc4a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxc4a ENSDARG00000070338 1382 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
2. dpysl3 ENSDARG00000002587 4381 3.473 0.720 - - - 0.955 0.899 0.899 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
3. scrt2 ENSDARG00000056175 4331 3.413 0.701 - - - 0.942 0.943 0.827 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
4. nova2 ENSDARG00000017673 7685 3.304 0.874 - - - 0.792 0.863 0.775 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
5. clstn3 ENSDARG00000073883 590 3.294 0.769 0.876 - - - 0.832 0.817 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
6. lhx1a ENSDARG00000014018 958 3.264 0.761 - - - - 0.847 0.893 0.763 - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
7. olfm1b ENSDARG00000014053 1392 3.236 0.709 - - - - 0.963 0.808 0.756 - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
8. si:dkey-25e11.10 si:dkey-25e11.10 955 3.172 0.722 - - - - 0.880 0.848 - 0.722
9. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 3.125 0.846 0.704 - - - 0.855 0.720 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
10. CBFA2T3 ENSDARG00000079012 6799 3.107 - 0.824 - - 0.749 0.711 0.823 - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
11. hoxc1a ENSDARG00000070337 1460 3.094 0.716 - - - - 0.845 0.806 - 0.727 homeobox C1a [Source:ZFIN;Acc:ZDB-GENE-000822-2]
12. atp6v0a1b ENSDARG00000015174 1052 3.064 0.715 - - - - 0.869 0.746 0.734 - ATPase H+ transporting V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
13. hmgb1b ENSDARG00000030479 10398 3.034 0.722 - - - 0.726 0.810 0.776 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
14. tuba1c ENSDARG00000055216 8384 2.672 0.858 - - - - 0.959 0.855 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
15. dpysl5a ENSDARG00000011141 1827 2.652 0.826 - - - - 0.963 0.863 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
16. SNAP91 ENSDARG00000098809 556 2.649 0.864 - - - - 0.969 0.816 - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
17. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.647 - - - - 0.972 0.917 0.758 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
18. slc1a2b ENSDARG00000102453 3136 2.644 - - - - 0.889 0.965 0.790 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
19. gnao1a ENSDARG00000016676 8184 2.64 0.816 - - - 0.989 - 0.835 - - guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
20. epha4b ENSDARG00000011600 3110 2.622 0.896 - - - - 0.873 0.853 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
21. gfap ENSDARG00000025301 5584 2.614 0.869 - - - - 0.906 0.839 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
22. dla ENSDARG00000010791 9281 2.603 0.873 - - - 0.928 - 0.802 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
23. myt1b ENSDARG00000102879 5411 2.595 0.873 - - - - 0.899 0.823 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
24. ctnnd2b ENSDARG00000003779 964 2.591 0.807 - - - 0.980 - 0.804 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
25. pcdh1gc5 ENSDARG00000104826 10052 2.587 0.805 - - - - 0.959 0.823 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
26. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 2.586 0.878 - - - 0.887 0.821 - - - protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
27. kcnc3a ENSDARG00000055855 1821 2.586 0.748 - - - - 0.949 0.889 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
28. nrarpb ENSDARG00000018958 6225 2.584 0.878 - - - - 0.901 0.805 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
29. pkib ENSDARG00000053110 527 2.584 0.883 - - - - 0.804 0.897 - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:ZFIN;Acc:ZDB-GENE-041014-312]
30. sncgb ENSDARG00000109715 1014 2.581 0.760 - - - - 0.965 0.856 - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
31. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.571 0.761 - - - - 0.942 0.868 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
32. pcsk1nl ENSDARG00000076170 1232 2.571 0.807 - - - - 0.943 0.821 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
33. stx1b ENSDARG00000000503 2724 2.569 0.807 - - - - 0.915 0.847 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
34. stmn2b ENSDARG00000070537 1586 2.564 0.850 - - - - 0.969 0.745 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
35. slc32a1 ENSDARG00000059775 1092 2.564 0.795 - - - - 0.952 0.817 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
36. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.559 0.795 - - - - 0.951 0.813 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
37. syt11a ENSDARG00000057913 1145 2.555 0.816 - - - - 0.931 0.808 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
38. phyhipla ENSDARG00000003998, ENSDARG00000115785 262 2.553 0.769 - - - - 0.911 0.873 - - phytanoyl-CoA 2-hydroxylase interacting protein-like a [Source:ZFIN;Acc:ZDB-GENE-061215-64]
39. snap25a ENSDARG00000020609 4537 2.548 0.749 - - - - 0.966 0.833 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
40. Sep-03 Sep-03 1124 2.547 0.814 - - - - 0.961 0.772 - -
41. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.547 0.861 - - - - 0.845 0.841 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
42. atp6v1b2 ENSDARG00000043465, ENSDARG00000113422 682 2.546 0.787 - - - - 0.914 0.845 - - ATPase H+ transporting V1 subunit B2 [Source:ZFIN;Acc:ZDB-GENE-030711-4]
43. atp6v0cb ENSDARG00000036577 3472 2.544 0.776 - - - - 0.928 0.840 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
44. SPOCK1 ENSDARG00000074644 794 2.541 0.826 - - - - 0.864 0.851 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
45. BX957337.1 BX957337.1 1685 2.54 0.725 - - - - 0.934 0.881 - -
46. TUBB8P7_1 TUBB8P7_1 2722 2.539 0.774 - - - - 0.966 0.799 - -
47. mllt11 ENSDARG00000071026 2518 2.537 0.808 - - - - 0.967 0.762 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
48. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.529 0.865 - - - - 0.823 0.841 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
49. si:ch73-21g5.7 ENSDARG00000093156 9412 2.518 0.856 - - - - 0.862 0.800 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
50. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.515 0.748 - - - - 0.919 0.848 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
51. pax6a ENSDARG00000103379 3061 2.514 0.779 - - - - 0.905 0.830 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
52. nbeaa ENSDARG00000070080 862 2.511 0.831 - - - - 0.831 0.849 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
53. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.507 0.876 - - - - 0.843 0.788 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
54. nadl1.1 1200 2.501 0.791 - - - - 0.900 0.810 - - neural adhesion molecule L1.1, transcript variant X1
55. PRRT2 ENSDARG00000103588 913 2.497 - 0.856 - - - 0.884 0.757 - - proline-rich transmembrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-121210-3]
56. rbfox1 ENSDARG00000014746 2808 2.496 0.795 - - - - 0.948 0.753 - - RNA binding fox-1 homolog 1 [Source:ZFIN;Acc:ZDB-GENE-040927-11]
57. hmp19 2554 2.491 0.812 - - - - 0.923 0.756 - - HMP19 protein
58. rab3ab ENSDARG00000043835 1267 2.49 0.736 - - - - 0.931 0.823 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
59. stmn4l ENSDARG00000043932 654 2.489 0.755 - - - - 0.896 0.838 - - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
60. slc1a3a ENSDARG00000104431 9888 2.482 0.784 - - - - 0.970 0.728 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
61. slc18a3a ENSDARG00000006356 1285 2.479 0.837 - - - - 0.828 0.814 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
62. ROBO3_1 ROBO3_1 468 2.477 0.705 - - - - 0.932 0.840 - -
63. clstn1 ENSDARG00000031720 5286 2.476 0.889 - - - - 0.756 0.831 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
64. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.474 0.824 - - - - 0.946 0.704 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
65. plp1a ENSDARG00000103732 3544 2.473 0.823 - - - - 0.875 0.775 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
66. amph ENSDARG00000007663 599 2.471 0.763 - - - - 0.870 0.838 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
67. nell2b ENSDARG00000062797 854 2.467 0.788 - - - - 0.828 0.851 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
68. polb ENSDARG00000003749 2049 2.466 - - - - 0.968 0.779 0.719 - - polymerase (DNA directed), beta [Source:ZFIN;Acc:ZDB-GENE-040830-1]
69. mir10d-1 mir10d-1 860 2.458 0.757 - - - - 0.887 0.814 - -
70. map7d2a ENSDARG00000068480 513 2.456 0.849 - - - - 0.774 0.833 - - MAP7 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-060526-150]
71. pcdh18a ENSDARG00000089805 1096 2.455 - - - - 0.983 0.713 0.759 - - protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]
72. irx5b ENSDARG00000074070 459 2.451 0.753 - - - - 0.910 0.788 - - iroquois homeobox 5b [Source:ZFIN;Acc:ZDB-GENE-040628-5]
73. snap25b ENSDARG00000058117 469 2.451 0.782 - - - - 0.921 0.748 - - synaptosomal-associated protein, 25b [Source:ZFIN;Acc:ZDB-GENE-980526-392]
74. BSN BSN 463 2.448 0.816 - - - - 0.733 0.899 - -
75. irx1b ENSDARG00000056594 2224 2.445 0.859 - - - - 0.783 0.803 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
76. ZFHX3 ENSDARG00000103057 7759 2.442 - - - - 0.782 0.866 0.794 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
77. eno2 ENSDARG00000014287 2162 2.441 0.814 - - - - 0.884 0.743 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
78. TUBA1A ENSDARG00000001889 25294 2.439 0.738 - - - - 0.908 0.793 - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
79. ppp2r2c ppp2r2c 441 2.437 0.843 - - - - 0.727 0.867 - -
80. spock3 ENSDARG00000070266, ENSDARG00000110158 934 2.432 0.803 - - - - 0.876 0.753 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
81. st18 663 2.427 0.769 - - - - 0.922 0.736 - - suppression of tumorigenicity 18, zinc finger
82. ckbb ENSDARG00000043257 3503 2.427 0.733 - - - - 0.906 0.788 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
83. atcaya ENSDARG00000071678 344 2.426 - - - - - 0.835 0.818 0.773 - ataxia, cerebellar, Cayman type a [Source:ZFIN;Acc:ZDB-GENE-070705-185]
84. add2 ENSDARG00000074581 1402 2.424 - 0.780 - - - 0.876 0.768 - - adducin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-080718-4]
85. zic4 ENSDARG00000031307 1228 2.417 0.701 - - - - 0.953 0.763 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
86. stmn1b ENSDARG00000033655 9491 2.414 0.707 - - - - 0.924 0.783 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
87. necap1 ENSDARG00000020798 612 2.413 0.716 - - - - 0.933 0.764 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
88. VSTM2B VSTM2B 149 2.412 - 0.785 - - - 0.826 0.801 - -
89. pcsk1 ENSDARG00000002600 404 2.41 0.752 - - - - 0.899 0.759 - - proprotein convertase subtilisin/kexin type 1 [Source:ZFIN;Acc:ZDB-GENE-071009-1]
90. spock2 ENSDARG00000075393 791 2.407 0.735 - - - - 0.941 0.731 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-090312-170]
91. cnrip1a ENSDARG00000091683 1491 2.406 0.752 - - - - 0.856 0.798 - - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
92. napg napg 645 2.405 0.733 - - - - 0.887 0.785 - -
93. EPB41L1 EPB41L1 1896 2.401 0.748 - - - - 0.781 0.872 - -
94. tdg tdg 3269 2.4 0.741 - - - 0.948 0.711 - - -
95. nes ENSDARG00000088805 2710 2.398 0.877 - - - - 0.782 0.739 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
96. neurog1 ENSDARG00000056130 3924 2.394 0.891 - - - - 0.713 0.790 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
97. hes6 ENSDARG00000019335 4754 2.393 0.767 0.712 - - - 0.914 - - - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
98. kif5aa ENSDARG00000098936 2428 2.389 0.732 - - - - 0.926 - 0.731 - kinesin family member 5A, a [Source:ZFIN;Acc:ZDB-GENE-070912-141]
99. adarb1a ENSDARG00000041609 476 2.384 0.735 - - - - 0.821 0.828 - - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
100. tox ENSDARG00000032317 9126 2.384 0.785 - - - - 0.808 0.791 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]

There are 2372 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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