Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hoxc1a

Gene Name Gene ID Reads Annotation
hoxc1a ENSDARG00000070337 1460 homeobox C1a [Source:ZFIN;Acc:ZDB-GENE-000822-2]










Genes with expression patterns similar to hoxc1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxc1a ENSDARG00000070337 1460 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox C1a [Source:ZFIN;Acc:ZDB-GENE-000822-2]
2. hmp19 2554 3.461 0.763 1.000 - - - 0.877 0.821 - - HMP19 protein
3. hoxc4a ENSDARG00000070338 1382 3.094 0.716 - - - - 0.845 0.806 - 0.727 homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
4. map2 ENSDARG00000055052 6062 2.599 0.809 1.000 - - - - 0.790 - - microtubule-associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-041010-118]
5. pcdh1gc5 ENSDARG00000104826 10052 2.592 0.855 - - - - 0.906 0.831 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
6. mapk12b ENSDARG00000006409 2246 2.578 0.846 - - - - 0.956 0.776 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
7. plp1a ENSDARG00000103732 3544 2.564 0.857 - - - - 0.927 0.780 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
8. slc1a3a ENSDARG00000104431 9888 2.563 0.847 - - - - 0.884 0.832 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
9. calm1a ENSDARG00000021811 4791 2.561 - 0.996 - - - 0.808 0.757 - - calmodulin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8308]
10. tuba1c ENSDARG00000055216 8384 2.559 0.876 - - - - 0.868 0.815 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
11. prrt1 ENSDARG00000062208 368 2.558 0.791 - - - - 0.879 0.888 - - proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
12. ZFHX3 ENSDARG00000103057 7759 2.55 0.924 - - - - 0.824 0.802 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
13. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.548 0.856 - - - - 0.935 0.757 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
14. cers6 ENSDARG00000053583 247 2.546 0.746 - - - - 0.959 0.841 - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
15. gfap ENSDARG00000025301 5584 2.545 0.843 - - - - 0.903 0.799 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
16. si:ch73-21g5.7 ENSDARG00000093156 9412 2.542 0.810 - - - - 0.924 0.808 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
17. stmn1b ENSDARG00000033655 9491 2.536 0.818 - - - - 0.928 0.790 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
18. cldn5a ENSDARG00000043716 3865 2.531 0.851 - - - - 0.820 0.860 - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
19. C7H4orf48 C7H4orf48 1455 2.52 0.797 - - - - 0.940 0.783 - -
20. CLIP3 ENSDARG00000054456 734 2.516 0.733 - - - - 0.911 0.872 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
21. zic4 ENSDARG00000031307 1228 2.513 0.772 - - - - 0.899 0.842 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
22. tnika ENSDARG00000056218 728 2.512 0.828 - - - - 0.920 0.764 - - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
23. igsf9a ENSDARG00000075864 1870 2.509 0.811 - - - - 0.928 0.770 - - immunoglobulin superfamily, member 9a [Source:ZFIN;Acc:ZDB-GENE-060503-288]
24. scrt2 ENSDARG00000056175 4331 2.508 0.882 - - - - 0.918 0.708 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
25. amph ENSDARG00000007663 599 2.508 0.851 - - - - 0.930 0.727 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
26. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.505 0.810 - - - - 0.932 0.763 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
27. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.498 0.798 - - - - 0.888 0.812 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
28. sox2 ENSDARG00000070913 2763 2.497 0.859 - - - - 0.858 0.780 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
29. syt11a ENSDARG00000057913 1145 2.497 0.743 - - - - 0.920 0.834 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
30. zic1 ENSDARG00000015567 2520 2.495 0.741 - - - - 0.960 0.794 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
31. CT030046.1 CT030046.1 190 2.493 0.768 - - - - 0.879 0.846 - -
32. eno2 ENSDARG00000014287 2162 2.485 0.753 - - - - 0.933 0.799 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
33. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 2.484 0.837 - - - - 0.846 0.801 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
34. ppp3ca ENSDARG00000004988 615 2.484 0.791 - - - - 0.890 0.803 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
35. mllt11 ENSDARG00000071026 2518 2.482 0.788 - - - - 0.888 0.806 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
36. snap25a ENSDARG00000020609 4537 2.477 0.837 - - - - 0.874 0.766 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
37. si:dkey-25e11.10 si:dkey-25e11.10 955 2.476 0.778 - - - - 0.885 0.813 - -
38. BX957337.1 BX957337.1 1685 2.474 0.710 - - - - 0.952 0.812 - -
39. nmnat2 ENSDARG00000004580 370 2.469 0.710 - - - - 0.924 0.835 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
40. stmn2a ENSDARG00000033234 2272 2.467 0.783 - - - - 0.936 0.748 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
41. gap43 ENSDARG00000099744 4114 2.461 0.807 - - - - 0.879 0.775 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
42. dpysl5a ENSDARG00000011141 1827 2.459 0.860 - - - - 0.830 0.769 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
43. stx1b ENSDARG00000000503 2724 2.455 0.824 - - - - 0.871 0.760 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
44. hoxb8b ENSDARG00000054025, ENSDARG00000111056 2106 2.451 0.717 - - - - 0.866 0.868 - - homeobox B8b [Source:ZFIN;Acc:ZDB-GENE-980526-291]
45. nova2 ENSDARG00000017673 7685 2.441 0.860 - - - - 0.782 0.799 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
46. tuba2 ENSDARG00000045014 1490 2.44 0.770 - - - - 0.960 0.710 - - tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
47. atp6v1b2 ENSDARG00000043465, ENSDARG00000113422 682 2.44 0.829 - - - - 0.873 0.738 - - ATPase H+ transporting V1 subunit B2 [Source:ZFIN;Acc:ZDB-GENE-030711-4]
48. rab3ab ENSDARG00000043835 1267 2.439 0.763 - - - - 0.913 0.763 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
49. sh3gl2 sh3gl2 1305 2.438 0.822 - - - - 0.883 0.733 - -
50. UBE2QL1 ENSDARG00000079276 3474 2.437 0.877 - - - - 0.733 0.827 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
51. gpr144 gpr144 479 2.433 0.853 - - - - 0.821 0.759 - -
52. syn1 ENSDARG00000060368, ENSDARG00000111164 397 2.424 0.848 - - - - 0.811 0.765 - - synapsin I [Source:ZFIN;Acc:ZDB-GENE-081105-93]
53. TUBB8P7_1 TUBB8P7_1 2722 2.423 0.773 - - - - 0.871 0.779 - -
54. tle2 5014 2.419 0.808 - - - - 0.800 0.811 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
55. adcyap1b ENSDARG00000027740 1539 2.418 0.773 - - - - 0.815 0.830 - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
56. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.415 0.857 - - - - 0.752 0.806 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
57. nxph1 ENSDARG00000033447 182 2.411 0.746 - - - - 0.895 0.770 - - neurexophilin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-231]
58. atp6v0a2a ENSDARG00000035538 278 2.411 0.747 - - - - 0.892 0.772 - - ATPase H+ transporting V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
59. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.398 0.835 - - - - 0.807 0.756 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
60. mdkb ENSDARG00000020708 5393 2.396 0.732 - - - - 0.924 0.740 - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
61. MAP6 MAP6 643 2.396 0.715 - - - - 0.855 0.826 - -
62. nrarpb ENSDARG00000018958 6225 2.395 0.755 - - - - 0.808 0.832 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
63. mir10d-1 mir10d-1 860 2.393 0.765 - - - - 0.836 0.792 - -
64. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 2.392 0.715 - - - - 0.905 0.772 - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
65. adam23a ENSDARG00000062323 580 2.389 0.787 - - - - 0.851 0.751 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
66. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.386 0.718 - - - - 0.913 0.755 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
67. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.384 0.733 - - - - 0.841 0.810 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
68. gabra5 ENSDARG00000070730 156 2.383 0.853 - - - - 0.795 0.735 - - gamma-aminobutyric acid (GABA) A receptor, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-081104-30]
69. sept5a ENSDARG00000013843 1206 2.382 0.821 - - - - 0.804 0.757 - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
70. pcsk1 ENSDARG00000002600 404 2.381 0.791 - - - - 0.849 0.741 - - proprotein convertase subtilisin/kexin type 1 [Source:ZFIN;Acc:ZDB-GENE-071009-1]
71. sh3glb2b ENSDARG00000035470, ENSDARG00000109833 719 2.378 0.830 - - - - 0.779 0.769 - - SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
72. atp6v0cb ENSDARG00000036577 3472 2.375 0.715 - - - - 0.824 0.836 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
73. pcsk1nl ENSDARG00000076170 1232 2.375 0.701 - - - - 0.883 0.791 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
74. celsr2 ENSDARG00000019726, ENSDARG00000094388 4002 2.37 0.717 - - - - 0.944 0.709 - - cadherin, EGF LAG seven-pass G-type receptor 2 [Source:ZFIN;Acc:ZDB-GENE-070122-2]
75. EFCC1 ENSDARG00000077826 1359 2.368 0.814 - - - - 0.802 0.752 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
76. kcnc3a ENSDARG00000055855 1821 2.365 0.770 - - - - 0.812 0.783 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
77. hnrnpub ENSDARG00000004735 16496 2.361 0.746 - - - - 0.801 0.814 - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
78. nrxn1a ENSDARG00000061647, ENSDARG00000111866 1069 2.359 0.702 - - - - 0.919 0.738 - - neurexin 1a [Source:ZFIN;Acc:ZDB-GENE-070206-1]
79. dpysl3 ENSDARG00000002587 4381 2.358 0.798 - - - - 0.738 0.822 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
80. lhx5 ENSDARG00000057936 785 2.355 0.736 - - - - 0.903 0.716 - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
81. vim ENSDARG00000010008 3551 2.351 0.789 - - - - 0.769 0.793 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
82. msi1 ENSDARG00000010710 2634 2.35 0.775 - - - - 0.739 0.836 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
83. hoxa5a ENSDARG00000102501 1667 2.349 0.810 - - - - 0.806 0.733 - - homeobox A5a [Source:ZFIN;Acc:ZDB-GENE-000823-9]
84. necap1 ENSDARG00000020798 612 2.349 0.779 - - - - 0.843 0.727 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
85. nes ENSDARG00000088805 2710 2.346 0.834 - - - - 0.711 0.801 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
86. tox ENSDARG00000032317 9126 2.342 0.754 - - - - 0.802 0.786 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
87. ckbb ENSDARG00000043257 3503 2.338 0.763 - - - - 0.792 0.783 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
88. irx1b ENSDARG00000056594 2224 2.338 0.728 - - - - 0.783 0.827 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
89. atl1 ENSDARG00000060481 251 2.338 0.719 - - - - 0.892 0.727 - - atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]
90. sprb ENSDARG00000058553 1694 2.336 0.714 - - - - 0.873 0.749 - - sepiapterin reductase b [Source:ZFIN;Acc:ZDB-GENE-070719-1]
91. slc1a2b ENSDARG00000102453 3136 2.335 0.788 - - - - 0.822 0.725 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
92. vgf ENSDARG00000105529 247 2.334 0.763 - - - - 0.721 0.850 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
93. nadl1.1 1200 2.33 0.785 - - - - 0.736 0.809 - - neural adhesion molecule L1.1, transcript variant X1
94. slc32a1 ENSDARG00000059775 1092 2.329 0.776 - - - - 0.838 0.715 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
95. dnajc5aa ENSDARG00000042948 2885 2.325 0.777 - - - - 0.720 0.828 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
96. dpysl4 ENSDARG00000103490 534 2.313 0.720 - - - - 0.808 0.785 - - dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
97. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.313 0.758 - - - - 0.775 0.780 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
98. STMN3 ENSDARG00000038465 1009 2.3 0.750 - - - - 0.803 0.747 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
99. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 2.299 0.785 - - - - 0.776 0.738 - - zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
100. negr1 ENSDARG00000021607 1051 2.298 0.795 - - - - 0.712 0.791 - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]

There are 1824 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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