Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hoxc11a

Gene Name Gene ID Reads Annotation
hoxc11a ENSDARG00000070351 1783 homeobox C11a [Source:ZFIN;Acc:ZDB-GENE-990415-111]










Genes with expression patterns similar to hoxc11a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxc11a ENSDARG00000070351 1783 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox C11a [Source:ZFIN;Acc:ZDB-GENE-990415-111]
2. ppp1cab ENSDARG00000071566 4350 1.957 - - - - 0.960 0.997 - - - protein phosphatase 1, catalytic subunit, alpha isozyme b [Source:ZFIN;Acc:ZDB-GENE-030131-5512]
3. slc2a2 ENSDARG00000056196 2061 1.811 - 0.817 - - - 0.994 - - - solute carrier family 2 (facilitated glucose transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1213]
4. pak2a ENSDARG00000068177 8931 1.803 - - 0.871 - 0.932 - - - - p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
5. smim7 ENSDARG00000074848 1260 1.796 - - 0.815 - 0.981 - - - - small integral membrane protein 7 [Source:ZFIN;Acc:ZDB-GENE-060810-180]
6. VPS37B_1 VPS37B_1 1816 1.792 - - 0.809 - 0.983 - - - -
7. GPA33 2465 1.77 - 0.792 - - 0.978 - - - - glycoprotein A33 (transmembrane)
8. COL4A3BP COL4A3BP 3288 1.76 - 0.764 - - - 0.996 - - -
9. akirin1 ENSDARG00000039969, ENSDARG00000116670 2533 1.751 - - - - 0.973 - 0.778 - - akirin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2178]
10. sec22a ENSDARG00000078328 1207 1.744 - 0.749 - - - 0.995 - - - SEC22 homolog A, vesicle trafficking protein [Source:ZFIN;Acc:ZDB-GENE-030131-3553]
11. ARID3A ENSDARG00000070843 1613 1.738 - 0.758 - - 0.980 - - - - AT rich interactive domain 3A (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-140106-97]
12. CR936437.1 CR936437.1 6465 1.737 - - - - - 0.990 0.747 - -
13. arf4a ENSDARG00000045989, ENSDARG00000103858 2545 1.723 - - - - - 0.999 0.724 - - ADP-ribosylation factor 4a [Source:ZFIN;Acc:ZDB-GENE-040801-109]
14. CABZ01072607.1 ENSDARG00000113761 784 1.717 - - - - 0.984 - 0.733 - - dynein cytoplasmic 2 heavy chain 1 [Source:NCBI gene;Acc:100332402]
15. nup62l ENSDARG00000020527, ENSDARG00000111836, ENSDARG00000112620 3763 1.716 - - - - 0.942 - 0.774 - - nucleoporin 62 like [Source:ZFIN;Acc:ZDB-GENE-030131-8491]
16. ppp2r5ea ENSDARG00000015474 2179 1.715 - 0.718 - - - 0.997 - - - protein phosphatase 2, regulatory subunit B', epsilon isoform a [Source:ZFIN;Acc:ZDB-GENE-030904-7]
17. rca2.1 ENSDARG00000056075 3410 1.71 - - - - - 0.995 0.715 - - regulator of complement activation group 2 gene 1 [Source:ZFIN;Acc:ZDB-GENE-050320-60]
18. cltcb ENSDARG00000090716 5544 1.707 - - - - 0.950 - 0.757 - - clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
19. zgc:163098 ENSDARG00000078911, ENSDARG00000111691, ENSDARG00000113714, ENSDARG00000115110 1802 1.698 - - - - 0.973 - 0.725 - - zgc:163098 [Source:ZFIN;Acc:ZDB-GENE-070410-141]
20. ERO1LB ERO1LB 1433 1.697 - - 0.717 - 0.980 - - - -
21. arglu1a ENSDARG00000019223 8716 1.696 - - - - 0.957 - 0.739 - - arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
22. KIF4A KIF4A 3322 1.685 - - - - 0.981 - 0.704 - -
23. boc ENSDARG00000074335 4832 1.682 - - - - - 0.903 0.779 - - BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]
24. maf1 ENSDARG00000013122 3365 1.68 - - - - 0.960 - 0.720 - - MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
25. sdc4 ENSDARG00000059906 10105 1.676 - - - - - 0.958 0.718 - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
26. rbm5 ENSDARG00000098280 396 1.666 0.856 - 0.810 - - - - - - RNA binding motif protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-3022]
27. nqo1 ENSDARG00000010250 6430 1.663 - 0.812 - - - 0.851 - - - NAD(P)H dehydrogenase, quinone 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1226]
28. ppp1r7 ENSDARG00000009740 2606 1.655 - 0.714 - - 0.941 - - - - protein phosphatase 1, regulatory (inhibitor) subunit 7 [Source:ZFIN;Acc:ZDB-GENE-051113-288]
29. tet3 ENSDARG00000062646 6672 1.65 - 0.746 - - 0.904 - - - - tet methylcytosine dioxygenase 3 [Source:ZFIN;Acc:ZDB-GENE-060526-109]
30. RBM47 ENSDARG00000061985 2498 1.648 - - - - 0.946 - 0.702 - - RNA binding motif protein 47 [Source:ZFIN;Acc:ZDB-GENE-030131-9612]
31. ttk ENSDARG00000041361 3911 1.647 - - - - 0.822 - 0.825 - - ttk protein kinase [Source:ZFIN;Acc:ZDB-GENE-030123-1]
32. rnd3b ENSDARG00000007396 881 1.646 - 0.813 0.833 - - - - - - Rho family GTPase 3b [Source:ZFIN;Acc:ZDB-GENE-040718-331]
33. vamp8 ENSDARG00000024116, ENSDARG00000114304 2747 1.64 - 0.786 0.854 - - - - - - vesicle-associated membrane protein 8 (endobrevin) [Source:ZFIN;Acc:ZDB-GENE-030131-5215]
34. anxa1b ENSDARG00000100095 7763 1.615 - 0.753 - - 0.862 - - - - annexin A1b [Source:ZFIN;Acc:ZDB-GENE-030131-6554]
35. exoc2 ENSDARG00000055610, ENSDARG00000109455 950 1.61 - 0.778 0.832 - - - - - - exocyst complex component 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1160]
36. lmo4a ENSDARG00000013853, ENSDARG00000111873, ENSDARG00000113473 2584 1.601 - - 0.832 - - 0.769 - - - LIM domain only 4a [Source:ZFIN;Acc:ZDB-GENE-010702-1]
37. cpsf3 ENSDARG00000027649 6897 1.591 - - - - 0.878 - 0.713 - - cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
38. myo5b ENSDARG00000062003 653 1.588 0.833 0.755 - - - - - - - myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
39. ARHGEF17 ENSDARG00000101644 625 1.571 - - 0.787 - - - 0.784 - - Rho guanine nucleotide exchange factor 17 [Source:HGNC Symbol;Acc:HGNC:21726]
40. rnf114 ENSDARG00000009886 725 1.57 - - 0.841 - - - 0.729 - - ring finger protein 114 [Source:ZFIN;Acc:ZDB-GENE-040813-1]
41. SI:DKEY-209E8.1 SI:DKEY-209E8.1 1143 1.562 - 0.827 - - - - 0.735 - -
42. vsig10 ENSDARG00000058605, ENSDARG00000111389 361 1.56 - 0.748 0.812 - - - - - - V-set and immunoglobulin domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-030131-7476]
43. cmtm4 ENSDARG00000052020, ENSDARG00000115570 1033 1.554 - - 0.787 - - - 0.767 - - CKLF-like MARVEL transmembrane domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040718-195]
44. herpud1 ENSDARG00000024314 1207 1.552 - 0.731 - - 0.821 - - - - homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 [Source:ZFIN;Acc:ZDB-GENE-050913-47]
45. bub1bb ENSDARG00000074927 1667 1.55 - 0.849 - - - - 0.701 - - BUB1 mitotic checkpoint serine/threonine kinase Bb [Source:ZFIN;Acc:ZDB-GENE-030829-51]
46. SEC16A 1707 1.534 - 0.799 0.735 - - - - - - SEC16 homolog A, endoplasmic reticulum export factor, transcript variant X3
47. homez homez 1875 1.534 - - 0.712 - - - 0.822 - -
48. CLDN23 CLDN23 2002 1.528 - 0.785 0.743 - - - - - -
49. C18H11orf58 C18H11orf58 1293 1.519 - - 0.809 - - - 0.710 - -
50. GID4 ENSDARG00000079482 1375 1.516 - 0.745 0.771 - - - - - - GID complex subunit 4 homolog [Source:HGNC Symbol;Acc:HGNC:28453]
51. strada ENSDARG00000037929 1614 1.514 - - 0.795 - - - 0.719 - - ste20-related kinase adaptor alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6482]
52. mbpb ENSDARG00000089413 3334 1.512 - 0.797 0.715 - - - - - - myelin basic protein b [Source:ZFIN;Acc:ZDB-GENE-030429-21]
53. si:ch211-218d20.13 si:ch211-218d20.13 5488 1.506 - - 0.717 - - 0.789 - - -
54. stk24b ENSDARG00000023878 1054 1.49 - - 0.762 - - - 0.728 - - serine/threonine kinase 24b (STE20 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2841]
55. erf ENSDARG00000063417 1053 1.482 0.753 0.729 - - - - - - - Ets2 repressor factor [Source:ZFIN;Acc:ZDB-GENE-010724-17]
56. rfc3 ENSDARG00000055969, ENSDARG00000112402 1448 1.479 - 0.767 - - - - 0.712 - - replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3]
57. nop16 ENSDARG00000044402 3645 1.477 - - 0.712 - - - 0.765 - - NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
58. arpp19a ENSDARG00000032532, ENSDARG00000109679 5102 1.473 - - 0.726 - - - 0.747 - - cAMP-regulated phosphoprotein 19a [Source:ZFIN;Acc:ZDB-GENE-040426-1281]
59. e2f8 ENSDARG00000057323 1432 1.453 - 0.702 - - - - 0.751 - - E2F transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-041111-260]
60. dhrs13a.2 ENSDARG00000111240 491 1.449 0.742 0.707 - - - - - - - dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040912-69]
61. map4k5 ENSDARG00000039125 1595 1.441 - 0.733 - - - - 0.708 - - mitogen-activated protein kinase kinase kinase kinase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6497]
62. pop5 ENSDARG00000053452 1347 1.424 - 0.715 - - - - 0.709 - - POP5 homolog, ribonuclease P/MRP subunit [Source:ZFIN;Acc:ZDB-GENE-050320-123]
63. clcn3 ENSDARG00000003269, ENSDARG00000110064 2961 0.999 - - - - - 0.999 - - - chloride channel 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1699]
64. erlin2 ENSDARG00000095968, ENSDARG00000110551 1023 0.999 - - - - - 0.999 - - - ER lipid raft associated 2 [Source:NCBI gene;Acc:100151163]
65. aldh8a1 ENSDARG00000036776, ENSDARG00000115119 462 0.998 - - - - - 0.998 - - - aldehyde dehydrogenase 8 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-040912-3]
66. RSBN1 RSBN1 599 0.998 - - - - - 0.998 - - -
67. osbp ENSDARG00000004634 1889 0.998 - - - - - 0.998 - - - oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
68. nrip1a ENSDARG00000068965 684 0.998 - - - - - 0.998 - - - nuclear receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040723-8]
69. fam129bb ENSDARG00000008026, ENSDARG00000111074 702 0.998 - - - - - 0.998 - - - family with sequence similarity 129, member Bb [Source:ZFIN;Acc:ZDB-GENE-030131-6218]
70. MYADM ENSDARG00000086815 659 0.998 - - - - - 0.998 - - - myeloid associated differentiation marker [Source:HGNC Symbol;Acc:HGNC:7544]
71. SCARNA6 SCARNA6 258 0.998 - - - - - 0.998 - - -
72. acot7 ENSDARG00000018653 693 0.998 - - - - - 0.998 - - - acyl-CoA thioesterase 7 [Source:ZFIN;Acc:ZDB-GENE-040912-42]
73. h1m ENSDARG00000102892 319 0.998 - - - - - 0.998 - - - linker histone H1M [Source:ZFIN;Acc:ZDB-GENE-030131-5614]
74. hnrnpua ENSDARG00000015206 4012 0.998 - - - - - 0.998 - - - heterogeneous nuclear ribonucleoprotein Ua [Source:ZFIN;Acc:ZDB-GENE-030131-3731]
75. ska3 ENSDARG00000069917, ENSDARG00000114978 497 0.998 - - - - - 0.998 - - - spindle and kinetochore associated complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030131-2997]
76. TMEM216 ENSDARG00000091576 357 0.998 - - - - - 0.998 - - - transmembrane protein 216 [Source:HGNC Symbol;Acc:HGNC:25018]
77. cyb5r1 ENSDARG00000018966, ENSDARG00000112062 1017 0.998 - - - - - 0.998 - - - cytochrome b5 reductase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8497]
78. zfp36l1b ENSDARG00000021443 2974 0.998 - - - - - 0.998 - - - zinc finger protein 36, C3H type-like 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2391]
79. wipi1 ENSDARG00000040657 2732 0.998 - - - - - 0.998 - - - WD repeat domain, phosphoinositide interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1404]
80. tefa ENSDARG00000039117, ENSDARG00000109532 3065 0.998 - - - - - 0.998 - - - thyrotrophic embryonic factor a [Source:ZFIN;Acc:ZDB-GENE-990415-264]
81. kif14 ENSDARG00000062187, ENSDARG00000112389 653 0.998 - - - - - 0.998 - - - kinesin family member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-5759]
82. csrp2 ENSDARG00000011961 1003 0.998 - - - - - 0.998 - - - cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863]
83. fntb ENSDARG00000027916 736 0.998 - - - - - 0.998 - - - farnesyltransferase, CAAX box, beta [Source:ZFIN;Acc:ZDB-GENE-030131-2220]
84. sorbs1 ENSDARG00000103435 2297 0.997 - - - - - 0.997 - - - sorbin and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-168]
85. mid1ip1a ENSDARG00000041051 5425 0.997 - - - - - 0.997 - - - MID1 interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-990415-81]
86. hsd11b3a hsd11b3a 1388 0.997 - - - - - 0.997 - - -
87. hsdl2 ENSDARG00000002523 2746 0.997 - - - - - 0.997 - - - hydroxysteroid dehydrogenase like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1066]
88. anks1b ENSDARG00000003512 847 0.997 - - - - - 0.997 - - - ankyrin repeat and sterile alpha motif domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-041210-349]
89. cecr1a 836 0.997 - - - - - 0.997 - - - cat eye syndrome chromosome region, candidate 1a
90. BX571712.1 ENSDARG00000097833 764 0.997 - - - - - 0.997 - - -
91. zgc:174855 ENSDARG00000094559 33515 0.997 - - - - - 0.997 - - - zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
92. gmppb ENSDARG00000017658 3484 0.997 - - - - - 0.997 - - - GDP-mannose pyrophosphorylase B [Source:ZFIN;Acc:ZDB-GENE-040801-234]
93. gm2a ENSDARG00000088439 5387 0.997 - - - - - 0.997 - - - GM2 ganglioside activator [Source:ZFIN;Acc:ZDB-GENE-050417-373]
94. KRTCAP2 ENSDARG00000070386 10103 0.996 - - - - - 0.996 - - - keratinocyte associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-060825-91]
95. ak3 ENSDARG00000058226 3160 0.996 - - - - - 0.996 - - - adenylate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2142]
96. mrpl45 ENSDARG00000044942, ENSDARG00000114416, ENSDARG00000115767 1599 0.996 - - - - - 0.996 - - - mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041]
97. zfr ENSDARG00000027109, ENSDARG00000116459 4171 0.995 - - - - - 0.995 - - - zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
98. cdk1 ENSDARG00000087554, ENSDARG00000110840 8297 0.995 - - - - - 0.995 - - - cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
99. scinla ENSDARG00000102415, ENSDARG00000117110 1996 0.995 - - - - - 0.995 - - - scinderin like a [Source:ZFIN;Acc:ZDB-GENE-030131-2005]
100. lpp ENSDARG00000023578 3581 0.995 - - - - - 0.995 - - - LIM domain containing preferred translocation partner in lipoma [Source:ZFIN;Acc:ZDB-GENE-040426-918]

There are 1239 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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