Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hoxb3a

Gene Name Gene ID Reads Annotation
hoxb3a ENSDARG00000029263 5493 homeobox B3a [Source:ZFIN;Acc:ZDB-GENE-990415-104]










Genes with expression patterns similar to hoxb3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxb3a ENSDARG00000029263 5493 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox B3a [Source:ZFIN;Acc:ZDB-GENE-990415-104]
2. SERP1_1 ENSDARG00000076223 6668 2.677 0.854 - - - 0.927 0.896 - - - stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]
3. her6 ENSDARG00000006514, ENSDARG00000111099 7477 2.639 0.929 0.781 - - - 0.929 - - - hairy-related 6 [Source:ZFIN;Acc:ZDB-GENE-980526-144]
4. ptges3a ENSDARG00000037284, ENSDARG00000113517 3999 2.589 0.984 - 0.865 - - - - 0.740 - prostaglandin E synthase 3a (cytosolic) [Source:ZFIN;Acc:ZDB-GENE-040426-2200]
5. srsf2a ENSDARG00000057484 25721 2.568 0.778 - - - 0.874 0.916 - - - serine/arginine-rich splicing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2706]
6. rbms1a ENSDARG00000074023 2742 1.951 - - - - 0.953 - 0.998 - - RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
7. hnrnpm ENSDARG00000061735 19428 1.943 0.965 - - - - - 0.978 - - heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
8. arf6b ENSDARG00000052928 4585 1.941 0.944 - - - - - 0.997 - - ADP-ribosylation factor 6b [Source:ZFIN;Acc:ZDB-GENE-030131-9056]
9. rab7 ENSDARG00000020497, ENSDARG00000109813, ENSDARG00000110814 2627 1.939 - - - - - 0.943 0.996 - - RAB7, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040426-1352]
10. tob1b ENSDARG00000021372 7048 1.937 0.940 - - - - - 0.997 - - transducer of ERBB2, 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2151]
11. aclya ENSDARG00000099079 2324 1.936 0.980 - - - 0.956 - - - - ATP citrate lyase a [Source:ZFIN;Acc:ZDB-GENE-031113-1]
12. eif3s6ip ENSDARG00000101082 18515 1.93 - - - - - 0.940 0.990 - - eukaryotic translation initiation factor 3, subunit 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2138]
13. C7H16orf87 C7H16orf87 5197 1.928 0.974 - - - - 0.954 - - -
14. meis1 meis1 6937 1.928 - - - - - 0.930 0.998 - -
15. mat2b ENSDARG00000012932 3146 1.925 0.976 - - - 0.949 - - - - methionine adenosyltransferase II, beta [Source:ZFIN;Acc:ZDB-GENE-030131-786]
16. si:dkey-256i11.1 si:dkey-256i11.1 3373 1.921 - - 0.923 - - - 0.998 - -
17. ndufb8 ENSDARG00000010113 11385 1.91 - - - - 0.923 - 0.987 - - NADH:ubiquinone oxidoreductase subunit B8 [Source:ZFIN;Acc:ZDB-GENE-040426-1858]
18. trim33 ENSDARG00000016181 1718 1.904 0.967 - - - - 0.937 - - - tripartite motif containing 33 [Source:ZFIN;Acc:ZDB-GENE-030131-2773]
19. plp1a ENSDARG00000103732 3544 1.903 - - 0.927 - 0.976 - - - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
20. chd2 ENSDARG00000060687 3832 1.901 0.943 - - - 0.958 - - - - chromodomain helicase DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-256]
21. lsm8 ENSDARG00000091656, ENSDARG00000111914 2751 1.898 0.978 - 0.920 - - - - - - LSM8 homolog, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-070629-3]
22. dbx2 2971 1.895 - - 0.921 - 0.974 - - - - developing brain homeobox 2
23. arl4d ENSDARG00000045074, ENSDARG00000114046 2237 1.893 - - - - 0.951 0.942 - - - ADP-ribosylation factor-like 4D [Source:ZFIN;Acc:ZDB-GENE-030131-2293]
24. phf12a ENSDARG00000074303 1025 1.884 0.976 - 0.908 - - - - - - PHD finger protein 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3876]
25. selt1b 1396 1.876 0.975 - 0.901 - - - - - - selenoprotein T, 1b
26. ccne2 ENSDARG00000098529 4695 1.874 - - 0.925 - 0.949 - - - - cyclin E2 [Source:ZFIN;Acc:ZDB-GENE-030131-9689]
27. eif1axb ENSDARG00000057912, ENSDARG00000111310 26395 1.868 0.948 - - - - - 0.920 - - eukaryotic translation initiation factor 1A X-linked b [Source:ZFIN;Acc:ZDB-GENE-030131-1319]
28. gspt1l ENSDARG00000098627 8381 1.864 - - 0.928 - - 0.936 - - - G1 to S phase transition 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-4009]
29. fubp1 ENSDARG00000029248 15259 1.855 - - - - - 0.858 0.997 - - far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
30. cers5 ENSDARG00000002365 2540 1.854 0.892 - - - 0.962 - - - - ceramide synthase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-1740]
31. MRPL51 ENSDARG00000041340, ENSDARG00000113440 1544 1.851 - - 0.888 - 0.963 - - - - mitochondrial ribosomal protein L51 [Source:ZFIN;Acc:ZDB-GENE-050320-40]
32. poc1bl ENSDARG00000012745 2451 1.843 0.972 - - - - 0.871 - - - POC1 centriolar protein homolog B (Chlamydomonas), like [Source:ZFIN;Acc:ZDB-GENE-050306-41]
33. CABZ01076275.1 ENSDARG00000100753 5137 1.842 - - 0.881 - 0.961 - - - - scavenger receptor class B, member 2b [Source:NCBI gene;Acc:564077]
34. psmc2 ENSDARG00000020101 8095 1.836 0.912 - - - - 0.924 - - - proteasome 26S subunit, ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1327]
35. kifc1 ENSDARG00000001558 6658 1.835 - - 0.887 - 0.948 - - - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
36. ube2v1 ENSDARG00000041875 5739 1.827 0.940 - 0.887 - - - - - - ubiquitin-conjugating enzyme E2 variant 1 [Source:ZFIN;Acc:ZDB-GENE-051030-102]
37. cpne1 ENSDARG00000075536 4063 1.826 0.911 - - - - 0.915 - - - copine I [Source:ZFIN;Acc:ZDB-GENE-030131-3562]
38. dynll1 ENSDARG00000058454 33932 1.818 - - - - - 0.871 0.947 - - dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]
39. metap1 ENSDARG00000033440, ENSDARG00000110334 6569 1.811 - - 0.894 - 0.917 - - - - methionyl aminopeptidase 1 [Source:ZFIN;Acc:ZDB-GENE-050626-124]
40. nkd1 ENSDARG00000020053 4450 1.802 - - - - 0.853 0.949 - - - naked cuticle homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-061108-3]
41. arpc3 ENSDARG00000057882 10113 1.802 - - - - - 0.819 0.983 - - actin related protein 2/3 complex, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040625-107]
42. ndufs7 ENSDARG00000074552, ENSDARG00000111455 10753 1.794 - - - - - 0.818 0.976 - - NADH:ubiquinone oxidoreductase core subunit S7 [Source:ZFIN;Acc:ZDB-GENE-041111-261]
43. cct2 ENSDARG00000087206, ENSDARG00000104674 19049 1.792 0.800 - - - - - 0.992 - - chaperonin containing TCP1, subunit 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-020419-6]
44. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.79 0.927 - 0.863 - - - - - - RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
45. slit3 ENSDARG00000034268, ENSDARG00000111488, ENSDARG00000115194 3999 1.79 - - - - - - 0.998 0.792 - slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
46. cbx3a ENSDARG00000003860 4922 1.784 - - 0.865 - - 0.919 - - - chromobox homolog 3a (HP1 gamma homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-1158]
47. gars ENSDARG00000059070 17015 1.781 0.904 - - - 0.877 - - - - glycyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9174]
48. atp6v1ab ENSDARG00000076318, ENSDARG00000112815 3858 1.777 - - 0.846 - - 0.931 - - - ATPase H+ transporting V1 subunit Ab [Source:ZFIN;Acc:ZDB-GENE-030131-9529]
49. med6 ENSDARG00000034734 2711 1.777 - 0.779 - - - - 0.998 - - mediator complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-040625-61]
50. igfbp1a ENSDARG00000099351 1717 1.765 - 0.766 - - - - 0.999 - - insulin-like growth factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-021231-1]
51. gbx1 ENSDARG00000071418 871 1.76 0.984 - - - - - - - 0.776 gastrulation brain homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-020117-2]
52. wdr82 ENSDARG00000014083 3159 1.756 - 0.859 0.897 - - - - - - WD repeat domain 82 [Source:ZFIN;Acc:ZDB-GENE-030131-333]
53. ctnnb1 ENSDARG00000014571 12004 1.749 - 0.756 - - - - 0.993 - - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
54. CABZ01111496.1 ENSDARG00000003041 15566 1.748 0.848 - - - 0.900 - - - - E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
55. nova1 ENSDARG00000020178 4129 1.744 0.991 - 0.753 - - - - - - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
56. rnf146 ENSDARG00000089981 715 1.742 0.951 0.791 - - - - - - - ring finger protein 146 [Source:ZFIN;Acc:ZDB-GENE-030131-5997]
57. get4 ENSDARG00000024398 1818 1.74 0.975 0.765 - - - - - - - golgi to ER traffic protein 4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5399]
58. mob4 ENSDARG00000056085 17978 1.739 - - - - 0.817 0.922 - - - MOB family member 4, phocein [Source:ZFIN;Acc:ZDB-GENE-040801-174]
59. tmem106bb ENSDARG00000035949, ENSDARG00000113700 1415 1.736 0.979 0.757 - - - - - - - transmembrane protein 106Bb [Source:ZFIN;Acc:ZDB-GENE-050913-37]
60. fundc2 ENSDARG00000103740 3856 1.731 - 0.735 - - - - 0.996 - - fun14 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-041010-26]
61. edf1 ENSDARG00000009950 10518 1.721 - - - - - - 0.990 0.731 - endothelial differentiation-related factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1710]
62. hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 1.718 - - 0.842 - 0.876 - - - - high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
63. dtnba ENSDARG00000077694 5483 1.712 - 0.725 - - - - 0.987 - - dystrobrevin, beta a [Source:ZFIN;Acc:ZDB-GENE-030131-3967]
64. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 1.705 - - 0.919 - 0.786 - - - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
65. si:dkey-13i19.8 ENSDARG00000093058 4617 1.701 - 0.724 - - - - 0.977 - - si:dkey-13i19.8 [Source:ZFIN;Acc:ZDB-GENE-041210-156]
66. xpo4 ENSDARG00000010281, ENSDARG00000109463 2010 1.7 - 0.702 - - - - 0.998 - - exportin 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3062]
67. elavl3 ENSDARG00000014420 8644 1.698 0.980 - - - 0.718 - - - - ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
68. calr ENSDARG00000076290 13987 1.697 0.895 - - - 0.802 - - - - calreticulin [Source:ZFIN;Acc:ZDB-GENE-030131-4042]
69. polb ENSDARG00000003749 2049 1.688 - - 0.937 - - - - 0.751 - polymerase (DNA directed), beta [Source:ZFIN;Acc:ZDB-GENE-040830-1]
70. Mar-07 Mar-07 2926 1.68 - 0.753 - - - 0.927 - - -
71. slc35d2 ENSDARG00000089837 1606 1.68 - 0.721 - - 0.959 - - - - solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2 [Source:ZFIN;Acc:ZDB-GENE-080125-1]
72. kidins220b ENSDARG00000017338 1937 1.68 - 0.719 - - 0.961 - - - - kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
73. GUSB ENSDARG00000063126 2712 1.679 - 0.772 0.907 - - - - - - glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
74. atad5a ENSDARG00000070568 1840 1.675 - 0.752 0.923 - - - - - - ATPase family, AAA domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-070912-20]
75. inip ENSDARG00000028523 1925 1.672 - - 0.914 - - - - 0.758 - ints3 and nabp interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-961]
76. snx1a ENSDARG00000071031 3975 1.671 0.955 - - - - - - 0.716 - sorting nexin 1a [Source:ZFIN;Acc:ZDB-GENE-060302-3]
77. wdhd1 ENSDARG00000015998 775 1.668 - 0.752 0.916 - - - - - - WD repeat and HMG-box DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1665]
78. cd164 ENSDARG00000013628 21750 1.667 - - - - - - 0.941 0.726 - CD164 molecule, sialomucin [Source:ZFIN;Acc:ZDB-GENE-030131-1598]
79. nhsl1b ENSDARG00000042627 3697 1.665 - 0.709 - - 0.956 - - - - NHS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040910-1]
80. MAPRE2 ENSDARG00000099943 3041 1.665 - 0.710 - - 0.955 - - - - microtubule-associated protein, RP/EB family, member 2 [Source:ZFIN;Acc:ZDB-GENE-071004-41]
81. ppm1g ENSDARG00000075559 6516 1.661 - 0.727 - - 0.934 - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
82. irf6 ENSDARG00000101986 1438 1.66 - - - - - 0.912 - 0.748 - interferon regulatory factor 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1137]
83. net1 ENSDARG00000032765 6738 1.659 - - - - 0.903 0.756 - - - neuroepithelial cell transforming 1 [Source:ZFIN;Acc:ZDB-GENE-041121-18]
84. mbd3a ENSDARG00000061774 4047 1.655 - 0.723 - - 0.932 - - - - methyl-CpG binding domain protein 3a [Source:ZFIN;Acc:ZDB-GENE-030131-9077]
85. smarcb1a ENSDARG00000033647, ENSDARG00000111561 3528 1.652 - - 0.709 - - 0.943 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a [Source:ZFIN;Acc:ZDB-GENE-041114-5]
86. vta1 ENSDARG00000013732 6072 1.652 - 0.714 - - 0.938 - - - - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
87. znf410 ENSDARG00000008218 1807 1.645 - 0.740 0.905 - - - - - - zinc finger protein 410 [Source:ZFIN;Acc:ZDB-GENE-040426-1817]
88. cplx4b ENSDARG00000059486 3192 1.644 - 0.717 - - - 0.927 - - - complexin 4b [Source:ZFIN;Acc:ZDB-GENE-070705-157]
89. si:ch73-46j18.5 ENSDARG00000092467 6002 1.639 - 0.812 - - 0.827 - - - - si:ch73-46j18.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7892]
90. lbr ENSDARG00000014013 4835 1.639 - - 0.910 - - - - 0.729 - lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
91. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.639 - - 0.710 - - 0.929 - - - splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
92. ston2 ENSDARG00000057452 2977 1.635 - 0.713 - - - 0.922 - - - stonin 2 [Source:ZFIN;Acc:ZDB-GENE-050913-137]
93. gpx1a ENSDARG00000018146, ENSDARG00000114736 4652 1.632 - - - - - 0.921 - 0.711 - glutathione peroxidase 1a [Source:ZFIN;Acc:ZDB-GENE-030410-1]
94. ponzr5 ENSDARG00000055046, ENSDARG00000115684 1093 1.631 - - - - - 0.926 - - 0.705 plac8 onzin related protein 5 [Source:ZFIN;Acc:ZDB-GENE-081104-325]
95. abracl ENSDARG00000042876 10208 1.627 0.869 - - - - 0.758 - - - ABRA C-terminal like [Source:ZFIN;Acc:ZDB-GENE-030131-8594]
96. fkbp8 ENSDARG00000001734 1709 1.627 - - 0.900 - - - - 0.727 - FK506 binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1849]
97. psmd10 ENSDARG00000015628, ENSDARG00000109675 983 1.623 - 0.715 0.908 - - - - - - proteasome 26S subunit, non-ATPase 10 [Source:ZFIN;Acc:ZDB-GENE-050112-1]
98. wu:fc26g07 wu:fc26g07 1165 1.622 - 0.714 0.908 - - - - - -
99. cyp20a1 ENSDARG00000006040 2570 1.62 - - - - 0.704 0.916 - - - cytochrome P450, family 20, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2646]
100. pex5 ENSDARG00000070654, ENSDARG00000116156, ENSDARG00000116397 1427 1.618 - - 0.902 - - - - 0.716 - peroxisomal biogenesis factor 5 [Source:ZFIN;Acc:ZDB-GENE-040426-981]

There are 1390 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA