Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hoxb1b

Gene Name Gene ID Reads Annotation
hoxb1b ENSDARG00000054033, ENSDARG00000112663 1967 homeobox B1b [Source:ZFIN;Acc:ZDB-GENE-980526-290]










Genes with expression patterns similar to hoxb1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxb1b ENSDARG00000054033, ENSDARG00000112663 1967 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox B1b [Source:ZFIN;Acc:ZDB-GENE-980526-290]
2. CLIP3 ENSDARG00000054456 734 2.259 0.778 0.747 - - - 0.734 - - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
3. gtf2a1 ENSDARG00000011000 2026 2.221 - 0.744 - - - 0.773 0.704 - - general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
4. ssbp4 ENSDARG00000056483 10196 2.195 0.778 - - - - 0.705 0.712 - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
5. slc1a3a ENSDARG00000104431 9888 1.804 - 0.883 - - - 0.921 - - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
6. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 1.711 - - - - - 0.900 0.811 - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
7. ubtf ENSDARG00000035066 4070 1.686 - - - - - 0.864 0.822 - - upstream binding transcription factor [Source:ZFIN;Acc:ZDB-GENE-030616-252]
8. sumo3a ENSDARG00000028119 13447 1.684 - - - - - 0.884 0.800 - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
9. hug 4100 1.674 - - - - - 0.900 0.774 - - HuG, transcript variant X2
10. smarce1 ENSDARG00000016871 9628 1.667 - - - - - 0.883 0.784 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
11. BX511086.1 BX511086.1 8308 1.654 - - - - - 0.854 0.800 - -
12. ANKRD11 ENSDARG00000051886 10024 1.654 - - - - - 0.807 0.847 - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
13. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.653 - - - - - 0.905 0.748 - - pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
14. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.638 - - - - - 0.923 0.715 - - ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
15. SERBP1 SERBP1 9276 1.637 - - - - - 0.827 0.810 - -
16. BX957337.1 BX957337.1 1685 1.634 - 0.750 - - - 0.884 - - -
17. fen1 ENSDARG00000011404 3358 1.633 - 0.857 - - - - 0.776 - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
18. pcdh1gc5 ENSDARG00000104826 10052 1.63 - 0.713 - - - 0.917 - - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
19. rbfox1 ENSDARG00000014746 2808 1.626 - - - - - 0.914 0.712 - - RNA binding fox-1 homolog 1 [Source:ZFIN;Acc:ZDB-GENE-040927-11]
20. zic4 ENSDARG00000031307 1228 1.621 - 0.731 - - - 0.890 - - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
21. syt11a ENSDARG00000057913 1145 1.62 0.745 - - - - 0.875 - - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
22. RNF38 ENSDARG00000062055 3901 1.614 0.706 - - - - 0.908 - - - ring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
23. myt1b ENSDARG00000102879 5411 1.613 - 0.726 - - - 0.887 - - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
24. rcor2 ENSDARG00000008278 1678 1.611 0.728 - - - - 0.883 - - - REST corepressor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1812]
25. ptenb ENSDARG00000056623 5783 1.61 - - - - - 0.774 0.836 - - phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
26. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 1.609 - - - - - 0.877 0.732 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
27. smo ENSDARG00000002952 6411 1.605 - - - - - 0.710 0.895 - - smoothened, frizzled class receptor [Source:ZFIN;Acc:ZDB-GENE-980526-89]
28. add2 ENSDARG00000074581 1402 1.604 - 0.736 - - - 0.868 - - - adducin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-080718-4]
29. notch3 ENSDARG00000052139 15033 1.602 0.733 - - - - 0.869 - - - notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
30. atp1b4 ENSDARG00000053262 1337 1.602 - 0.729 - - - 0.873 - - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
31. hmgb3a ENSDARG00000056725 15668 1.6 0.733 - - - - 0.867 - - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
32. nrarpa ENSDARG00000091419, ENSDARG00000111485 7867 1.599 0.763 - - - - 0.836 - - - NOTCH regulated ankyrin repeat protein a [Source:ZFIN;Acc:ZDB-GENE-030515-6]
33. gnb2 ENSDARG00000035357, ENSDARG00000105310 1523 1.595 - - - - - 0.825 0.770 - - guanine nucleotide binding protein (G protein), beta polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-050320-65]
34. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 1.594 - 0.710 - - - 0.884 - - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
35. stmn1a ENSDARG00000004169 21169 1.593 0.738 - - - - - 0.855 - - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
36. khsrp ENSDARG00000026489 15738 1.592 - - - - - 0.869 0.723 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
37. gfap ENSDARG00000025301 5584 1.592 - - - - - 0.876 - - 0.716 glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
38. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 1.585 0.727 - - - - 0.858 - - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
39. hnrnpub ENSDARG00000004735 16496 1.581 0.790 - - - - 0.791 - - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
40. npm1b ENSDARG00000037675 5448 1.579 - - - - - 0.825 0.754 - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
41. igsf9a ENSDARG00000075864 1870 1.571 - - - - - 0.827 0.744 - - immunoglobulin superfamily, member 9a [Source:ZFIN;Acc:ZDB-GENE-060503-288]
42. nae1 ENSDARG00000011301, ENSDARG00000111542 1505 1.566 - 0.708 - - - 0.858 - - - nedd8 activating enzyme E1 subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1552]
43. snap25b ENSDARG00000058117 469 1.561 0.725 - - - - 0.836 - - - synaptosomal-associated protein, 25b [Source:ZFIN;Acc:ZDB-GENE-980526-392]
44. hoxc8a ENSDARG00000070346 4252 1.555 - - - - - 0.853 0.702 - - homeobox C8a [Source:ZFIN;Acc:ZDB-GENE-990415-114]
45. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 1.552 - 0.735 - - - 0.817 - - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
46. abi2b ENSDARG00000014875 2259 1.55 - - - - - 0.848 0.702 - - abl-interactor 2b [Source:ZFIN;Acc:ZDB-GENE-060519-5]
47. nadl1.1 1200 1.549 0.706 - - - - 0.843 - - - neural adhesion molecule L1.1, transcript variant X1
48. slc7a6os ENSDARG00000010596 1599 1.547 - - - - - 0.755 0.792 - - solute carrier family 7, member 6 opposite strand [Source:ZFIN;Acc:ZDB-GENE-041114-32]
49. vdac1 ENSDARG00000045132 8051 1.543 0.745 - - - - 0.798 - - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
50. tmem47 ENSDARG00000057322 4691 1.541 - 0.777 - - - 0.764 - - - transmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
51. si:ch211-251b21.1 ENSDARG00000007275 15724 1.531 - - - 0.809 - 0.722 - - - si:ch211-251b21.1 [Source:ZFIN;Acc:ZDB-GENE-060809-5]
52. tuba2 ENSDARG00000045014 1490 1.53 0.701 - - - - 0.829 - - - tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
53. snrpe ENSDARG00000033175 7462 1.524 - 0.793 - - - 0.731 - - - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
54. UNKL ENSDARG00000037838 1086 1.524 - - - - - 0.773 0.751 - - unkempt family zinc finger-like [Source:ZFIN;Acc:ZDB-GENE-131120-196]
55. hoxb10a ENSDARG00000011579 2135 1.52 0.743 - - - - - 0.777 - - homeobox B10a [Source:ZFIN;Acc:ZDB-GENE-000328-2]
56. prpf40a ENSDARG00000058467 6565 1.52 - - - - - 0.779 0.741 - - PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
57. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 1.519 - - - - - 0.789 0.730 - - cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
58. LANCL2 ENSDARG00000045465 1221 1.517 - - - - - 0.755 0.762 - - LanC lantibiotic synthetase component C-like 2 (bacterial) [Source:ZFIN;Acc:ZDB-GENE-070209-191]
59. clta ENSDARG00000045618, ENSDARG00000115484 11767 1.514 - - - - - 0.807 0.707 - - clathrin, light chain A [Source:ZFIN;Acc:ZDB-GENE-040426-1986]
60. arglu1a ENSDARG00000019223 8716 1.512 - - - - - 0.790 0.722 - - arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
61. uba1 ENSDARG00000037559 11579 1.512 - - - - - 0.760 0.752 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
62. cnn3b ENSDARG00000029856 4807 1.506 - - - - - 0.771 0.735 - - calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]
63. lypla2 ENSDARG00000053656 8971 1.504 - - - - - 0.782 0.722 - - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
64. pak2b ENSDARG00000018476 4331 1.503 - - - - - 0.789 0.714 - - p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
65. srcap ENSDARG00000005236 1740 1.501 - - - - - 0.722 0.779 - - Snf2-related CREBBP activator protein [Source:ZFIN;Acc:ZDB-GENE-041008-127]
66. atp6v1c1a ENSDARG00000023967 4611 1.497 - - - - - 0.757 0.740 - - ATPase H+ transporting V1 subunit C1a [Source:ZFIN;Acc:ZDB-GENE-030616-612]
67. luc7l ENSDARG00000055903 3357 1.493 - 0.744 - - - - 0.749 - - LUC7-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-111]
68. wasf3 wasf3 3287 1.492 0.717 - - - - 0.775 - - -
69. nucks1a ENSDARG00000078473 28285 1.492 - 0.709 - - - 0.783 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
70. CU928222.1 ENSDARG00000097436 1662 1.49 - 0.743 - - - 0.747 - - -
71. glrbb ENSDARG00000052769, ENSDARG00000113828 467 1.489 0.707 - - - - 0.782 - - - glycine receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-040801-106]
72. si:ch211-51e12.7 ENSDARG00000045914 9598 1.488 0.783 - - - - 0.705 - - - si:ch211-51e12.7 [Source:ZFIN;Acc:ZDB-GENE-030131-8279]
73. BX511021.3 ENSDARG00000117414 592 1.485 0.780 - - - - 0.705 - - -
74. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 1.481 - - - - - 0.741 0.740 - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
75. srsf6b ENSDARG00000016783 9926 1.479 - - - - - 0.748 0.731 - - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
76. her15.2 her15.2 1701 1.478 - 0.701 - - - 0.777 - - -
77. tmpob ENSDARG00000022978 8121 1.476 - - - - - 0.767 0.709 - - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
78. TAF15 ENSDARG00000070019 5102 1.475 0.730 - - - - - 0.745 - - TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
79. znf865 ENSDARG00000036698 15532 1.469 - - - - - 0.762 0.707 - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
80. CABZ01111990.1 CABZ01111990.1 4374 1.467 0.721 - - - - 0.746 - - -
81. prpf38a ENSDARG00000039213, ENSDARG00000116046 1537 1.464 - 0.744 - - - - 0.720 - - pre-mRNA processing factor 38A [Source:ZFIN;Acc:ZDB-GENE-040801-225]
82. ncor1 ENSDARG00000035285, ENSDARG00000113129 4234 1.463 - - - - - 0.762 0.701 - - nuclear receptor corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-993]
83. bcas2 ENSDARG00000043631 1971 1.454 - 0.731 - - - - 0.723 - - BCAS2, pre-mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-030408-5]
84. znf207b ENSDARG00000101277, ENSDARG00000110098, ENSDARG00000115586 4227 1.452 - 0.702 - - - - 0.750 - - zinc finger protein 207, b [Source:ZFIN;Acc:ZDB-GENE-030131-7377]
85. sox2 ENSDARG00000070913 2763 1.448 - 0.739 - - - 0.709 - - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
86. pbx4 ENSDARG00000052150 35676 1.444 0.725 - - - - - 0.719 - - pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
87. gpr146 ENSDARG00000059610 810 1.443 0.714 - - - - 0.729 - - - G protein-coupled receptor 146 [Source:ZFIN;Acc:ZDB-GENE-050823-3]
88. irx3b ENSDARG00000031138 2538 1.424 - 0.721 - - - 0.703 - - - iroquois homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-030131-525]
89. slc44a5b ENSDARG00000057419 534 1.423 - - - - - 0.707 0.716 - - solute carrier family 44, member 5b [Source:ZFIN;Acc:ZDB-GENE-081105-4]
90. neurog1 ENSDARG00000056130 3924 1.423 - 0.714 - - - 0.709 - - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
91. PEG3_30 PEG3_30 60 1.419 0.717 0.702 - - - - - - -
92. hoxa10b ENSDARG00000031337 3992 1.414 0.703 - - - - 0.711 - - - homeobox A10b [Source:ZFIN;Acc:ZDB-GENE-990415-97]
93. ube2e2 ENSDARG00000034670 5918 1.41 - - - - - 0.709 0.701 - - ubiquitin-conjugating enzyme E2E 2 [Source:ZFIN;Acc:ZDB-GENE-040801-237]
94. tfdp2 ENSDARG00000042835 1985 0.944 - - - - - 0.944 - - - transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
95. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 0.931 - - - - - 0.931 - - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
96. hnrnpab hnrnpab 72354 0.929 - - - - - 0.929 - - -
97. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 0.928 - - - - - 0.928 - - - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
98. TNKS TNKS 2775 0.919 - - - - - 0.919 - - -
99. sypa ENSDARG00000042974, ENSDARG00000110528 3217 0.919 - - - - - 0.919 - - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
100. cadm3 ENSDARG00000057013 1545 0.915 - - - - - 0.915 - - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]

There are 1233 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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