Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for hnrnpub

Gene Name Gene ID Reads Annotation
hnrnpub ENSDARG00000004735 16496 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]










Genes with expression patterns similar to hnrnpub

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hnrnpub ENSDARG00000004735 16496 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
2. sumo3a ENSDARG00000028119 13447 5.674 0.776 0.893 - 0.709 - 0.852 0.822 0.731 0.891 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
3. tmem35 ENSDARG00000052567 5685 4.899 0.777 - - 0.809 - 0.756 0.897 0.744 0.916 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
4. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 4.858 0.737 0.906 - 0.706 - 0.860 0.840 - 0.809 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
5. zswim5 ENSDARG00000055900 4243 4.599 0.752 - - - 0.787 0.701 0.785 0.744 0.830 zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
6. hmgb3a ENSDARG00000056725 15668 4.323 0.880 - - - 0.743 0.859 0.944 - 0.897 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
7. tmpob ENSDARG00000022978 8121 4.186 0.768 - - 0.792 - 0.903 0.848 - 0.875 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
8. khsrp ENSDARG00000026489 15738 4.165 0.795 0.894 - - - 0.853 0.812 - 0.811 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
9. nova2 ENSDARG00000017673 7685 4.092 0.780 - - 0.864 - 0.811 0.862 - 0.775 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
10. tuba1c ENSDARG00000055216 8384 4.043 0.789 - - - - 0.828 0.835 0.702 0.889 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
11. fam60al 2846 4.024 0.707 - - - - 0.835 0.827 0.797 0.858 family with sequence similarity 60, member A, like
12. pou3f3a ENSDARG00000042032 2835 3.993 0.747 - - 0.822 - 0.746 0.866 - 0.812 POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
13. mllt11 ENSDARG00000071026 2518 3.993 0.760 - - - - 0.826 0.827 0.768 0.812 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
14. celf3a ENSDARG00000034668 2432 3.985 - - - - 0.735 0.860 0.736 0.748 0.906 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
15. AGO1 ENSDARG00000092644 4521 3.959 0.784 - - - 0.819 0.769 0.843 - 0.744 argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
16. si:ch73-21g5.7 ENSDARG00000093156 9412 3.924 0.759 - - 0.757 - 0.844 0.850 - 0.714 si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
17. dpysl3 ENSDARG00000002587 4381 3.902 0.756 - - - - 0.771 0.848 0.706 0.821 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
18. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 3.829 0.727 - - - - 0.822 0.836 0.701 0.743 SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
19. nono ENSDARG00000020482, ENSDARG00000115783 12482 3.466 0.817 - - 0.931 - 0.838 - - 0.880 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
20. tubb5 ENSDARG00000037997 18691 3.428 0.800 0.906 - 0.844 - - 0.878 - - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
21. fzd3a ENSDARG00000021664 1958 3.393 0.787 - - 0.882 - - 0.870 - 0.854 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
22. dld ENSDARG00000020219 4928 3.375 0.831 - 0.890 - - - 0.885 - 0.769 deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
23. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 3.37 0.836 - - - 0.765 0.832 0.937 - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
24. ZFHX3 ENSDARG00000103057 7759 3.366 0.812 - - 0.805 - 0.854 0.895 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
25. lfng ENSDARG00000037879 11783 3.354 0.861 - - 0.802 - 0.834 - - 0.857 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
26. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 3.345 - - - 0.847 - 0.786 0.828 - 0.884 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
27. ssbp3b ENSDARG00000030155 7163 3.34 - - - - - 0.888 0.869 0.771 0.812 single stranded DNA binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-040426-2801]
28. tle2 5014 3.332 0.735 - - 0.814 - 0.903 0.880 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
29. vezf1a ENSDARG00000008247 1449 3.324 - - - - - 0.880 0.850 0.723 0.871 vascular endothelial zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-040108-4]
30. marcksl1b ENSDARG00000035715 37390 3.32 0.830 - - 0.906 - - - 0.706 0.878 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
31. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 3.313 0.735 - - 0.912 0.810 - 0.856 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
32. gap43 ENSDARG00000099744 4114 3.305 0.746 - - - - 0.848 0.855 - 0.856 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
33. puf60a ENSDARG00000032175 5618 3.301 - - - 0.823 0.817 - 0.806 - 0.855 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
34. ptbp2b ENSDARG00000015901 2458 3.288 0.756 - - - - 0.809 0.854 - 0.869 polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
35. CR936437.1 CR936437.1 6465 3.287 0.722 - - - 0.867 - 0.824 - 0.874
36. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 3.28 0.825 - - 0.763 - 0.835 0.857 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
37. nrarpa ENSDARG00000091419, ENSDARG00000111485 7867 3.264 0.849 - - - - 0.863 0.773 - 0.779 NOTCH regulated ankyrin repeat protein a [Source:ZFIN;Acc:ZDB-GENE-030515-6]
38. atp6v0cb ENSDARG00000036577 3472 3.257 0.777 - - - - 0.845 0.881 - 0.754 ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
39. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 3.256 - - - 0.801 - 0.793 0.771 - 0.891 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
40. plp1a ENSDARG00000103732 3544 3.244 0.744 - - 0.794 - 0.866 0.840 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
41. rrm1 ENSDARG00000014017 7296 3.237 0.817 - - 0.809 - - 0.799 - 0.812 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
42. rap2ip rap2ip 681 3.224 0.710 - - - - 0.849 0.848 - 0.817
43. whsc1l1 8544 3.223 - - - 0.766 - - 0.798 0.763 0.896 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
44. dpysl5a ENSDARG00000011141 1827 3.217 - - - - - 0.776 0.796 0.738 0.907 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
45. notch3 ENSDARG00000052139 15033 3.215 0.758 - - 0.805 - 0.854 - 0.798 - notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
46. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 3.215 0.838 - - - 0.768 - - 0.771 0.838 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
47. vdac1 ENSDARG00000045132 8051 3.21 0.864 - - - 0.778 0.782 0.786 - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
48. tmsb ENSDARG00000054911 6411 3.205 0.735 - - - - 0.828 0.862 - 0.780 thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
49. lypla2 ENSDARG00000053656 8971 3.205 - - - 0.703 - 0.873 0.810 - 0.819 lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
50. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.202 0.767 - - - - 0.739 0.790 - 0.906 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
51. dnajc5aa ENSDARG00000042948 2885 3.196 0.802 - - - - 0.733 0.869 - 0.792 DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
52. arnt2 ENSDARG00000103697 5731 3.183 - - - - - 0.750 0.884 0.740 0.809 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
53. tuba2 ENSDARG00000045014 1490 3.183 0.793 - - - - 0.836 0.750 - 0.804 tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
54. bcl11ab ENSDARG00000063153 3032 3.178 - - - 0.714 - 0.820 - 0.716 0.928 B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
55. npm1b ENSDARG00000037675 5448 3.174 0.729 - - - - 0.869 0.776 - 0.800 nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
56. SNRPG ENSDARG00000099667 18697 3.168 - - - 0.792 - 0.720 0.781 - 0.875 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
57. wu:fq41a10 wu:fq41a10 7009 3.166 - - - 0.738 0.791 - 0.900 0.737 -
58. si:dkeyp-44a8.2 ENSDARG00000092493 8308 3.16 0.717 - - - 0.744 - 0.871 - 0.828 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
59. mdkb ENSDARG00000020708 5393 3.152 0.738 - - 0.756 - 0.806 0.852 - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
60. stmn1b ENSDARG00000033655 9491 3.143 0.772 - - 0.743 - 0.787 0.841 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
61. wasf3 wasf3 3287 3.142 0.785 - - - 0.814 0.750 0.793 - -
62. C8H1orf106 C8H1orf106 2690 3.142 0.750 - - 0.745 - - 0.845 - 0.802
63. myt1b ENSDARG00000102879 5411 3.135 0.718 - - - - 0.859 0.839 - 0.719 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
64. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 3.133 - - - - - 0.769 0.855 0.706 0.803 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
65. Sep-03 Sep-03 1124 3.13 0.717 - - - - 0.753 0.817 - 0.843
66. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 3.128 - - - - 0.730 0.836 0.804 - 0.758 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
67. FP016176.1 FP016176.1 7030 3.117 0.736 - - - - 0.737 0.884 - 0.760
68. nadl1.1 1200 3.106 0.721 - - - - 0.798 0.832 - 0.755 neural adhesion molecule L1.1, transcript variant X1
69. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 3.097 - - - - 0.823 0.784 0.782 - 0.708 cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
70. MKI67 ENSDARG00000091150 11038 3.093 0.739 - - 0.794 - - 0.783 - 0.777 marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
71. CLIP3 ENSDARG00000054456 734 3.092 0.752 - - - - 0.758 0.854 - 0.728 CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
72. nbeaa ENSDARG00000070080 862 3.09 0.701 - - - - 0.700 0.800 - 0.889 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
73. mapk12b ENSDARG00000006409 2246 3.087 0.712 - - 0.714 - 0.834 0.827 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
74. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 3.08 0.772 - - 0.725 - 0.803 0.780 - - protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
75. smarcd1 ENSDARG00000019004 6028 3.074 - - - 0.796 - 0.711 0.807 - 0.760 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
76. cspg5a ENSDARG00000069981 1699 3.066 0.719 - - 0.797 - - 0.849 0.701 - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
77. fscn1a ENSDARG00000059680 3999 3.062 - - - 0.779 - 0.794 0.768 - 0.721 fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
78. lppr3a lppr3a 1294 3.048 - - - 0.748 - 0.723 0.714 - 0.863
79. RASGRF2 RASGRF2 644 3.044 0.720 - - - - 0.775 0.803 - 0.746
80. fez1 ENSDARG00000023174 701 3.032 0.723 - - - - 0.786 - 0.736 0.787 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
81. DACT3_1 DACT3_1 1235 3.024 0.760 - - - - 0.755 0.718 - 0.791
82. smc2 ENSDARG00000017744, ENSDARG00000114076 2271 3.012 - - - 0.715 0.793 - 0.700 - 0.804 structural maintenance of chromosomes 2 [Source:ZFIN;Acc:ZDB-GENE-030131-105]
83. C19H7orf41 C19H7orf41 2243 2.994 0.708 - - - - 0.814 0.763 0.709 -
84. adarb1a ENSDARG00000041609 476 2.993 0.735 - - - - 0.746 0.787 - 0.725 adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
85. usp7 ENSDARG00000073710 7017 2.988 0.731 - - 0.728 - 0.724 - - 0.805 ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
86. smarca4 smarca4 9726 2.923 0.723 - - 0.703 - - 0.782 0.715 -
87. tox ENSDARG00000032317 9126 2.674 - - - - - 0.917 0.859 - 0.898 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
88. snrpd3l ENSDARG00000076283 7655 2.645 - - - - - 0.891 0.859 - 0.895 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
89. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 2.635 - - - 0.830 - - 0.850 - 0.955 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
90. hmgb2b ENSDARG00000053990 11519 2.617 0.780 - - - - - 0.904 - 0.933 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
91. CYTH2 ENSDARG00000028800 2349 2.601 - - - - - 0.865 0.899 - 0.837 cytohesin 2 [Source:HGNC Symbol;Acc:HGNC:9502]
92. notch1b ENSDARG00000052094 7874 2.594 - 0.903 - - - 0.837 0.854 - - notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
93. TUBA1A ENSDARG00000001889 25294 2.588 - - - 0.835 - 0.860 0.893 - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
94. nrarpb ENSDARG00000018958 6225 2.581 - - - - - 0.842 0.868 - 0.871 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
95. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 2.566 - - - 0.805 - - 0.842 - 0.919 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
96. hmgb1b ENSDARG00000030479 10398 2.564 0.736 - - - - 0.924 0.904 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
97. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 2.559 - - - 0.833 - 0.841 0.885 - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
98. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.556 - - - 0.801 - - 0.853 - 0.902 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
99. hoxa9b ENSDARG00000056819 3081 2.556 0.803 - - - - 0.827 0.926 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
100. pcdh1gc5 ENSDARG00000104826 10052 2.556 0.827 - - - - 0.858 0.871 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]

There are 2303 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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