Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hmgn3

Gene Name Gene ID Reads Annotation
hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]










Genes with expression patterns similar to hmgn3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
2. cnot1 ENSDARG00000004174, ENSDARG00000109411 4625 3.3 - 0.761 0.894 - - - - 0.811 0.834 CCR4-NOT transcription complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040915-1]
3. ccne2 ENSDARG00000098529 4695 3.237 - - 0.848 - 0.900 - 0.714 0.775 - cyclin E2 [Source:ZFIN;Acc:ZDB-GENE-030131-9689]
4. acvr1b acvr1b 2963 2.613 - - - - 0.909 0.897 - - 0.807
5. arl4d ENSDARG00000045074, ENSDARG00000114046 2237 2.474 - 0.722 - - 0.897 - 0.855 - - ADP-ribosylation factor-like 4D [Source:ZFIN;Acc:ZDB-GENE-030131-2293]
6. psmb7 ENSDARG00000037962 11542 2.462 - - 0.784 - - 0.912 - - 0.766 proteasome subunit beta 7 [Source:ZFIN;Acc:ZDB-GENE-001208-4]
7. kifc1 ENSDARG00000001558 6658 2.451 - - 0.808 - 0.874 - 0.769 - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
8. pafah1b1a ENSDARG00000032013 3183 2.451 - - - - - 0.887 0.727 0.837 - platelet-activating factor acetylhydrolase 1b, regulatory subunit 1a [Source:ZFIN;Acc:ZDB-GENE-040116-2]
9. cercam ENSDARG00000079049, ENSDARG00000109573 2228 2.45 - 0.839 - - 0.906 - 0.705 - - cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
10. pbx4 ENSDARG00000052150 35676 2.445 - 0.713 - - - 0.901 0.831 - - pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
11. txnrd1 11401 2.406 - - 0.811 - 0.776 - 0.819 - - thioredoxin reductase 1
12. foxk2 ENSDARG00000030583 2982 2.39 - 0.711 0.902 - - - - - 0.777 forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
13. max ENSDARG00000024844 6035 2.377 - - 0.809 - - - - 0.838 0.730 myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
14. mcm2 ENSDARG00000102798 8148 2.367 - - - - 0.825 - 0.803 - 0.739 minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
15. kif22 ENSDARG00000102624 3694 2.348 - - - - - - 0.755 0.792 0.801 kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
16. dad1 ENSDARG00000102105 14788 2.341 - 0.754 - - - 0.825 0.762 - - defender against cell death 1 [Source:ZFIN;Acc:ZDB-GENE-060503-233]
17. hnrpl 6412 2.327 - - - - 0.756 - 0.811 - 0.760 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
18. dmxl2 ENSDARG00000091293 1593 2.3 - 0.721 0.844 - - - 0.735 - - Dmx-like 2 [Source:ZFIN;Acc:ZDB-GENE-031007-6]
19. lbr ENSDARG00000014013 4835 2.294 - - 0.827 - - - 0.716 - 0.751 lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
20. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 27740 2.253 - - 0.768 - - - - 0.707 0.778 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
21. slc2a3a ENSDARG00000013295 2449 1.798 - - - - 0.906 0.892 - - - solute carrier family 2 (facilitated glucose transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-040718-390]
22. Sep-06 Sep-06 5465 1.788 - - - - - 0.921 - 0.867 -
23. stag2b ENSDARG00000053668, ENSDARG00000109728 7193 1.786 - - - - - 0.940 0.846 - - stromal antigen 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2785]
24. MRPL51 ENSDARG00000041340, ENSDARG00000113440 1544 1.778 - - 0.865 - 0.913 - - - - mitochondrial ribosomal protein L51 [Source:ZFIN;Acc:ZDB-GENE-050320-40]
25. dbx2 2971 1.777 - - 0.864 - 0.913 - - - - developing brain homeobox 2
26. NAIF1_1 NAIF1_1 1336 1.769 - - 0.887 - - - - 0.882 -
27. ppp6r3 ENSDARG00000013379 2912 1.766 - - 0.871 - - - - 0.895 - protein phosphatase 6, regulatory subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3251]
28. farsa ENSDARG00000098825 2813 1.754 - - - - - 0.914 - 0.840 - phenylalanyl-tRNA synthetase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-050512-2]
29. CABZ01076275.1 ENSDARG00000100753 5137 1.753 - - 0.842 - 0.911 - - - - scavenger receptor class B, member 2b [Source:NCBI gene;Acc:564077]
30. phc2b_1 ENSDARG00000013224 1316 1.745 - - 0.876 - - - - 0.869 - polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
31. clta ENSDARG00000045618, ENSDARG00000115484 11767 1.744 - - 0.908 - - - 0.836 - - clathrin, light chain A [Source:ZFIN;Acc:ZDB-GENE-040426-1986]
32. ube2z ENSDARG00000029215 1059 1.743 - - - - - 0.892 - 0.851 - ubiquitin-conjugating enzyme E2Z [Source:ZFIN;Acc:ZDB-GENE-040718-15]
33. ip6k2 ip6k2 3926 1.738 - 0.873 - - - - - 0.865 -
34. tubb5 ENSDARG00000037997 18691 1.737 - - - - 0.861 - - 0.876 - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
35. ctnnbip1 ENSDARG00000038954 2519 1.737 - - 0.888 - - - - 0.849 - catenin, beta interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-3]
36. phf12a ENSDARG00000074303 1025 1.736 - - 0.874 - - - - 0.862 - PHD finger protein 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3876]
37. crb2a ENSDARG00000060106 1307 1.736 - - 0.871 - - - - 0.865 - crumbs family member 2a [Source:ZFIN;Acc:ZDB-GENE-060612-1]
38. impdh1b ENSDARG00000029524 7472 1.732 - - 0.837 - - - - 0.895 - IMP (inosine 5'-monophosphate) dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030219-206]
39. plp1a ENSDARG00000103732 3544 1.729 - - 0.850 - 0.879 - - - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
40. acin1a ENSDARG00000054290 14023 1.723 - - - - - 0.913 0.810 - - apoptotic chromatin condensation inducer 1a [Source:ZFIN;Acc:ZDB-GENE-030616-583]
41. cdc42l ENSDARG00000040158, ENSDARG00000116748 11671 1.721 - - - - - 0.918 0.803 - - cell division cycle 42, like [Source:ZFIN;Acc:ZDB-GENE-030131-6069]
42. hoxb3a ENSDARG00000029263 5493 1.718 - - 0.842 - 0.876 - - - - homeobox B3a [Source:ZFIN;Acc:ZDB-GENE-990415-104]
43. tead1a ENSDARG00000028159 3574 1.717 - - - - 0.898 - - 0.819 - TEA domain family member 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2101]
44. setbp1 ENSDARG00000093799 4499 1.713 - - - - 0.874 - - 0.839 - SET binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-72]
45. ube2e3 ENSDARG00000012244 8909 1.711 - - - - 0.885 - - 0.826 - ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-408]
46. cul4b ENSDARG00000060510 6053 1.709 - - 0.909 - - - - 0.800 - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
47. lsm8 ENSDARG00000091656, ENSDARG00000111914 2751 1.702 - - 0.880 - - - - - 0.822 LSM8 homolog, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-070629-3]
48. metap1 ENSDARG00000033440, ENSDARG00000110334 6569 1.702 - - 0.836 - 0.866 - - - - methionyl aminopeptidase 1 [Source:ZFIN;Acc:ZDB-GENE-050626-124]
49. gdi1 ENSDARG00000056122 4106 1.698 - - 0.862 - - - 0.836 - - GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
50. atp1a1a.1 ENSDARG00000002791 7392 1.698 - - 0.799 - - 0.899 - - - ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-001212-1]
51. lpl ENSDARG00000087697 2578 1.698 - - 0.864 - - - - 0.834 - lipoprotein lipase [Source:ZFIN;Acc:ZDB-GENE-990415-139]
52. sipa1l2 ENSDARG00000061640 4545 1.696 - - - - 0.892 - - 0.804 - signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
53. nucks1b ENSDARG00000012777 4468 1.695 - - - - - - 0.798 0.897 - nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
54. COL4A3BP COL4A3BP 3288 1.694 - - 0.891 - - - - 0.803 -
55. c1d ENSDARG00000021112 2839 1.693 - 0.831 - - - - - 0.862 - C1D nuclear receptor corepressor [Source:ZFIN;Acc:ZDB-GENE-041024-8]
56. ifi30 ENSDARG00000056378, ENSDARG00000112359 2472 1.686 - 0.800 - - - 0.886 - - - interferon, gamma-inducible protein 30 [Source:ZFIN;Acc:ZDB-GENE-030131-8447]
57. kpna2 ENSDARG00000038066 7954 1.684 - - - - - 0.915 - - 0.769 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:ZFIN;Acc:ZDB-GENE-040718-22]
58. ZBTB16 ZBTB16 3385 1.684 - - 0.847 - - - 0.837 - -
59. pbrm1l ENSDARG00000077038, ENSDARG00000116839 1978 1.679 - - 0.876 - - - - - 0.803 polybromo 1, like [Source:ZFIN;Acc:ZDB-GENE-010501-3]
60. safb ENSDARG00000020467 5608 1.677 - - - - 0.881 - - - 0.796 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
61. ptpn13 ENSDARG00000103699 2866 1.677 - - 0.861 - - - - 0.816 - protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
62. btg2 ENSDARG00000020298 6616 1.675 - 0.885 - - - - - 0.790 - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
63. ptena ENSDARG00000071018, ENSDARG00000114986, ENSDARG00000115966 6610 1.674 - - 0.860 - - - 0.814 - - phosphatase and tensin homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-3776]
64. pls3 ENSDARG00000037655 5175 1.673 - - - - - 0.952 0.721 - - plastin 3 (T isoform) [Source:ZFIN;Acc:ZDB-GENE-040718-10]
65. hat1 ENSDARG00000034916 5712 1.671 - - - - 0.845 - 0.826 - - histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
66. zgc:91860 ENSDARG00000041599, ENSDARG00000110489 669 1.669 - - 0.862 - - - 0.807 - - zgc:91860 [Source:ZFIN;Acc:ZDB-GENE-040704-34]
67. kansl2 ENSDARG00000056318, ENSDARG00000113311 4702 1.664 - - 0.881 - - - - - 0.783 KAT8 regulatory NSL complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-041010-67]
68. znf319 znf319 3027 1.663 - - - - - - - 0.831 0.832
69. cand1 ENSDARG00000017841 8164 1.66 - - - - 0.902 - 0.758 - - cullin-associated and neddylation-dissociated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2872]
70. eva1ba ENSDARG00000102701 1480 1.659 - 0.793 0.866 - - - - - - eva-1 homolog Ba (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-030131-8941]
71. cers5 ENSDARG00000002365 2540 1.654 - 0.750 - - 0.904 - - - - ceramide synthase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-1740]
72. ppm1g ENSDARG00000075559 6516 1.653 - - - - 0.866 - - 0.787 - protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
73. utp11l ENSDARG00000039958, ENSDARG00000109895 1509 1.653 - 0.792 - - - - - 0.861 - UTP11-like, U3 small nucleolar ribonucleoprotein (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-8093]
74. arf1l arf1l 9119 1.651 - - - - - - 0.776 0.875 -
75. dr1 ENSDARG00000105098, ENSDARG00000113528 5263 1.649 - - - - - - - 0.851 0.798 down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797]
76. gga3 ENSDARG00000103667 675 1.649 - 0.778 0.871 - - - - - - ggolgi-associated, gamma adaptin ear containing, ARF binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-041111-218]
77. ldb1a ENSDARG00000010137 3035 1.646 - - 0.860 - - - - - 0.786 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
78. atrx ENSDARG00000042236, ENSDARG00000112921, ENSDARG00000116878 7922 1.646 - - - - - - 0.798 0.848 - alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]
79. SERP1_1 ENSDARG00000076223 6668 1.645 - - - - 0.871 - 0.774 - - stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]
80. cbfa2t2 ENSDARG00000074337 4323 1.643 - - 0.871 - - - 0.772 - - core-binding factor, runt domain, alpha subunit 2; translocated to, 2 [Source:ZFIN;Acc:ZDB-GENE-070209-1]
81. zgc:85777 ENSDARG00000027009, ENSDARG00000112673 1499 1.638 - 0.766 0.872 - - - - - - zgc:85777 [Source:ZFIN;Acc:ZDB-GENE-040426-2210]
82. rab5aa ENSDARG00000018602 8947 1.634 - - 0.786 - - - - 0.848 - RAB5A, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-030131-139]
83. arcn1a ENSDARG00000002792 2847 1.634 - - 0.890 - - - 0.744 - - archain 1a [Source:ZFIN;Acc:ZDB-GENE-021031-2]
84. kansl3 ENSDARG00000029556 2487 1.632 - - 0.875 - - - - - 0.757 KAT8 regulatory NSL complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050809-132]
85. ccnd2a ENSDARG00000051748 2506 1.631 - 0.715 - - - 0.916 - - - cyclin D2, a [Source:ZFIN;Acc:ZDB-GENE-070424-30]
86. ywhabb ENSDARG00000075758 23104 1.628 - - - - - 0.884 0.744 - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide b [Source:ZFIN;Acc:ZDB-GENE-040426-2160]
87. CR548630.1 CR548630.1 3301 1.627 - - 0.877 - - - - - 0.750
88. myef2 ENSDARG00000059398 6050 1.625 - - - - - - - 0.842 0.783 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
89. arih2 ENSDARG00000012848 7087 1.624 - - - - - - 0.762 0.862 - ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
90. tcf3b ENSDARG00000099999, ENSDARG00000112646 3589 1.623 - - - - - - - 0.817 0.806 transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-051113-64]
91. cdca5 ENSDARG00000044437 2041 1.623 - 0.753 0.870 - - - - - - cell division cycle associated 5 [Source:ZFIN;Acc:ZDB-GENE-030131-235]
92. prps1b ENSDARG00000037506, ENSDARG00000110507 4170 1.623 - - - - - - - 0.857 0.766 phosphoribosyl pyrophosphate synthetase 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4011]
93. cdk13 ENSDARG00000076791 828 1.622 - 0.733 - - - 0.889 - - - cyclin-dependent kinase 13 [Source:ZFIN;Acc:ZDB-GENE-030131-4975]
94. mphosph8 ENSDARG00000005576, ENSDARG00000114033 5350 1.622 - - - - - 0.877 - 0.745 - M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
95. mad2l1 ENSDARG00000004713 3398 1.621 - - 0.862 - - - - - 0.759 MAD2 mitotic arrest deficient-like 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-030515-3]
96. clvs2 ENSDARG00000053122 1390 1.62 - - - - - 0.904 - - 0.716 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
97. vamp5 ENSDARG00000068262 2413 1.62 - 0.735 - - - 0.885 - - - vesicle-associated membrane protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4209]
98. luc7l3 ENSDARG00000014366 4416 1.619 - - - - 0.902 - - - 0.717 LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
99. top2a ENSDARG00000024488 4273 1.618 - - - - - - - 0.878 0.740 DNA topoisomerase II alpha [Source:ZFIN;Acc:ZDB-GENE-030131-2453]
100. GATAD2B ENSDARG00000005834 3855 1.618 - - - - - - - 0.859 0.759 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]

There are 1720 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA