Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hmgn2

Gene Name Gene ID Reads Annotation
hmgn2 ENSDARG00000099572 110168 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]










Genes with expression patterns similar to hmgn2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hmgn2 ENSDARG00000099572 110168 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
2. ptmaa ENSDARG00000021113, ENSDARG00000110479 42345 2.454 0.797 - - - - - 0.880 0.777 - prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
3. TUBA1A ENSDARG00000001889 25294 2.335 - - - - - 0.726 - 0.828 0.781 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
4. AL954137.2 ENSDARG00000114408 104506 2.33 0.729 - - 0.752 - - - 0.849 -
5. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.323 - - - - 0.741 0.734 - 0.848 - POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
6. ptmab ENSDARG00000101766 182812 2.232 0.702 - - - - - - 0.817 0.713 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
7. nrarpb ENSDARG00000018958 6225 2.137 - - - - 0.709 0.709 - 0.719 - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
8. sox3 ENSDARG00000053569 12016 1.702 - - - - 0.880 - - 0.822 - SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
9. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 1.62 - - - 0.807 - - - 0.813 - heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
10. gnb2l1 61553 1.594 - - 0.844 - 0.750 - - - - guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
11. hnrnpa0a ENSDARG00000089302 45675 1.58 - - - - - 0.793 - 0.787 - heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
12. RPL37A RPL37A 62256 1.565 - - 0.765 - - - 0.800 - -
13. celf2 ENSDARG00000002131, ENSDARG00000110267 15605 1.542 - - - - - - - 0.792 0.750 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
14. tmem35 ENSDARG00000052567 5685 1.535 - - - - - 0.710 - 0.825 - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
15. nucks1a ENSDARG00000078473 28285 1.524 - - - - - - - 0.786 0.738 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
16. hes6 ENSDARG00000019335 4754 1.517 - - - - - - 0.744 0.773 - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
17. marcksb ENSDARG00000008803 42949 1.499 - - - - - 0.715 - 0.784 - myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
18. zgc:112425 zgc:112425 293873 1.479 - 0.722 - - - - - 0.757 -
19. notch3 ENSDARG00000052139 15033 1.449 - - - - - 0.730 - - 0.719 notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
20. myt1b ENSDARG00000102879 5411 1.447 - - - - - 0.727 - 0.720 - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
21. cirbp cirbp 88363 0.911 - - - - - - - 0.911 -
22. hnrnpab hnrnpab 72354 0.887 - - - - - - - 0.887 -
23. hoxb9a ENSDARG00000056023 11856 0.883 - 0.883 - - - - - - - homeobox B9a [Source:ZFIN;Acc:ZDB-GENE-990415-109]
24. stmn1b ENSDARG00000033655 9491 0.876 - - - - - - - 0.876 - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
25. smarca5 ENSDARG00000052348 15433 0.865 - - - - 0.865 - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
26. spna2 28368 0.864 - - - - - - 0.864 - - spectrin alpha 2, transcript variant X12
27. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 0.854 - - 0.854 - - - - - - glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
28. ran ENSDARG00000057026 54670 0.852 - - 0.852 - - - - - - RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
29. khdrbs1a ENSDARG00000052856 53666 0.851 - - - - - - - 0.851 - KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
30. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 0.849 - - - - - - - 0.849 - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
31. spata13 ENSDARG00000062837 5330 0.847 - - 0.847 - - - - - - spermatogenesis associated 13 [Source:ZFIN;Acc:ZDB-GENE-091116-25]
32. eif1axb ENSDARG00000057912, ENSDARG00000111310 26395 0.84 - - 0.840 - - - - - - eukaryotic translation initiation factor 1A X-linked b [Source:ZFIN;Acc:ZDB-GENE-030131-1319]
33. snrpc ENSDARG00000009871 9567 0.838 - - 0.838 - - - - - - small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
34. vat1 ENSDARG00000056481, ENSDARG00000111382 7389 0.836 - - 0.836 - - - - - - vesicle amine transport 1 [Source:ZFIN;Acc:ZDB-GENE-030616-178]
35. pebp1 ENSDARG00000042069 6651 0.836 - - 0.836 - - - - - - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
36. krcp ENSDARG00000040224 5961 0.835 - - 0.835 - - - - - - kelch repeat-containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-2126]
37. zcchc8 ENSDARG00000034982 3406 0.835 - - 0.835 - - - - - - zinc finger, CCHC domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-060526-6]
38. hn1b hn1b 7325 0.835 - - 0.835 - - - - - -
39. snx7 ENSDARG00000105185 2977 0.834 - - 0.834 - - - - - - sorting nexin 7 [Source:ZFIN;Acc:ZDB-GENE-040704-77]
40. ptgr1 ENSDARG00000024877, ENSDARG00000115676 4312 0.834 - - 0.834 - - - - - - prostaglandin reductase 1 [Source:ZFIN;Acc:ZDB-GENE-041212-80]
41. rgs12b ENSDARG00000036774 5088 0.833 - - 0.833 - - - - - - regulator of G protein signaling 12b [Source:ZFIN;Acc:ZDB-GENE-031006-13]
42. fam192a ENSDARG00000041631 4113 0.833 - - 0.833 - - - - - - family with sequence similarity 192, member A [Source:ZFIN;Acc:ZDB-GENE-030131-6692]
43. kidins220a ENSDARG00000031240 3639 0.833 - - 0.833 - - - - - - kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
44. ube2kb ENSDARG00000013505, ENSDARG00000114039 3968 0.833 - - 0.833 - - - - - - ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-980605-9]
45. eif2s1a ENSDARG00000005827 5992 0.832 - - 0.832 - - - - - - eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
46. CWC15 ENSDARG00000013382 8969 0.832 - - 0.832 - - - - - - CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-10]
47. arglu1a ENSDARG00000019223 8716 0.83 - - 0.830 - - - - - - arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
48. anp32b ENSDARG00000023330 25013 0.83 - - 0.830 - - - - - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:ZFIN;Acc:ZDB-GENE-030131-719]
49. vps35 ENSDARG00000008224 13245 0.829 - - 0.829 - - - - - - vacuolar protein sorting 35 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-2042]
50. zgc:110239 ENSDARG00000077664 7015 0.828 - - 0.828 - - - - - - zgc:110239 [Source:ZFIN;Acc:ZDB-GENE-050417-107]
51. usp9 ENSDARG00000013708 9057 0.828 - - 0.828 - - - - - - ubiquitin specific peptidase 9 [Source:ZFIN;Acc:ZDB-GENE-061019-1]
52. tceb1b 14935 0.827 - - 0.827 - - - - - - transcription elongation factor B (SIII), polypeptide 1b
53. HNRNPAB HNRNPAB 22267 0.824 - - - - - - - 0.824 -
54. hmga1a ENSDARG00000028335 254077 0.824 - - - - - - - 0.824 - high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
55. rab10 ENSDARG00000046106 15618 0.821 - - 0.821 - - - - - - RAB10, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040718-304]
56. glula ENSDARG00000099776 14156 0.82 - - 0.820 - - - - - - glutamate-ammonia ligase (glutamine synthase) a [Source:ZFIN;Acc:ZDB-GENE-030131-688]
57. unc45b ENSDARG00000008433 8298 0.816 - - 0.816 - - - - - - unc-45 myosin chaperone B [Source:ZFIN;Acc:ZDB-GENE-020919-3]
58. med23 ENSDARG00000029157 4453 0.816 - - 0.816 - - - - - - mediator complex subunit 23 [Source:ZFIN;Acc:ZDB-GENE-040724-82]
59. icn ENSDARG00000009978 85647 0.816 - - 0.816 - - - - - - ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
60. eef1a1l1 ENSDARG00000020850 364816 0.815 - - - - - - - - 0.815 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
61. hmgb2b ENSDARG00000053990 11519 0.814 - - - - - - - 0.814 - high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
62. ier5 ENSDARG00000009881, ENSDARG00000111680 11432 0.811 - - - - 0.811 - - - - immediate early response 5 [Source:ZFIN;Acc:ZDB-GENE-030616-127]
63. atp6v0ca ENSDARG00000057853 23277 0.81 - - 0.810 - - - - - - ATPase H+ transporting V0 subunit ca [Source:ZFIN;Acc:ZDB-GENE-020419-23]
64. RPL29 ENSDARG00000077717 88791 0.807 - - 0.807 - - - - - - ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
65. eef2b ENSDARG00000100371, ENSDARG00000109247 211841 0.805 - - 0.805 - - - - - - eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
66. mcm6 ENSDARG00000057683, ENSDARG00000113317 6591 0.803 - - 0.803 - - - - - - minichromosome maintenance complex component 6 [Source:ZFIN;Acc:ZDB-GENE-030909-6]
67. aldoaa ENSDARG00000011665 56184 0.8 - - 0.800 - - - - - - aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
68. stmn1a ENSDARG00000004169 21169 0.799 - - - - - - - 0.799 - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
69. ptbp1a ENSDARG00000019362 6290 0.797 - - - - 0.797 - - - - polypyrimidine tract binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050522-492]
70. hmgb1b ENSDARG00000030479 10398 0.797 - - - - - - - 0.797 - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
71. si:ch1073-429i10.3 75111 0.793 - - - - - - 0.793 - - si:ch1073-429i10.3, transcript variant X2
72. tmpob ENSDARG00000022978 8121 0.793 - - - - - - - 0.793 - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
73. setb ENSDARG00000003920 21788 0.792 - - - - 0.792 - - - - SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
74. eif5a2 ENSDARG00000056186 43804 0.788 - - - - 0.788 - - - - eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
75. hdac1 ENSDARG00000015427 19804 0.787 - - - - - - - 0.787 - histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
76. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 0.783 - - - - - - - 0.783 - splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
77. sncb ENSDARG00000104945 8197 0.78 0.780 - - - - - - - - synuclein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-1615]
78. marcksl1a ENSDARG00000039034 37303 0.78 - - - - - - - 0.780 - MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
79. impdh1b ENSDARG00000029524 7472 0.78 - - - - - - 0.780 - - IMP (inosine 5'-monophosphate) dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030219-206]
80. khsrp ENSDARG00000026489 15738 0.779 - - - - - - - 0.779 - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
81. mdka ENSDARG00000036036 23084 0.777 0.777 - - - - - - - - midkine a [Source:ZFIN;Acc:ZDB-GENE-990621-1]
82. cct6a ENSDARG00000021252 33641 0.777 - - - - - - - - 0.777 chaperonin containing TCP1, subunit 6A (zeta 1) [Source:ZFIN;Acc:ZDB-GENE-011018-2]
83. hnrnpm ENSDARG00000061735 19428 0.776 - - - - - - - 0.776 - heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
84. fabp7a ENSDARG00000007697 5211 0.775 - - - - - - - 0.775 - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
85. CABZ01111496.1 ENSDARG00000003041 15566 0.774 - - - - - - 0.774 - - E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
86. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 61276 0.774 - - - - - - 0.774 - - ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
87. mdh2 ENSDARG00000043371 14485 0.77 - 0.770 - - - - - - - malate dehydrogenase 2, NAD (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-040426-2143]
88. mt-co1 ENSDARG00000063905 130950 0.769 - - 0.769 - - - - - - cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
89. bzw1a ENSDARG00000010481 28451 0.765 - - - - - - - 0.765 - basic leucine zipper and W2 domains 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3951]
90. ddx5 ENSDARG00000038068 35302 0.765 - - - - - - - 0.765 - DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
91. ctsla ENSDARG00000007836 67814 0.764 - - 0.764 - - - - - - cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
92. seta ENSDARG00000031495 39977 0.763 - - - - - - - 0.763 - SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
93. ppiaa ENSDARG00000009212 290634 0.759 - - - - - - - 0.759 - peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
94. zgc:77262 ENSDARG00000044545 5563 0.759 - - - - - - - 0.759 - zgc:77262 [Source:ZFIN;Acc:ZDB-GENE-040426-1811]
95. cox4i1 ENSDARG00000032970 53784 0.758 - - - - - - 0.758 - - cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
96. si:dkeyp-86f7.3 si:dkeyp-86f7.3 92941 0.757 - - - - - - - 0.757 -
97. h3f3a 66671 0.753 - - - - - - - - 0.753 H3 histone, family 3A, transcript variant X1
98. slc18a3a ENSDARG00000006356 1285 0.75 - - - - - 0.750 - - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
99. hp1bp3 ENSDARG00000044669 23708 0.75 - - - - - - 0.750 - - heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
100. nono ENSDARG00000020482, ENSDARG00000115783 12482 0.749 - - - - - - - 0.749 - non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]

There are 111 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA